Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8229399.1

Orthogroup ID

OG0009727

Physical Location & Seq

Genomic Coordinates Reverse (-)

13 .. 754

Gene Structure 742 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8229399.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 543 bp

gtggatacttccaagttggtggccgcttgtgagaagatagaccctgtgaaagaatgctgtgctcaaacatgtcagaatgccatattagaagctgctacgagaattgcttcaaaaacttctgatcttttgagcacagacggtggtcatgctgtcttacctgatcacataagtagagtcaatgactgcaaaaatattgtccttcgctggctggcaagtaaactcaatccttctcatgccaaggaagttctaaggggactctcaaattgcaagattaacaaggtttgccccctggtcttcccaaatatgaaacatgttgcactcggctgtggggatgagataagcaaccagacagcttgctgtacggccatggacagctatgtttcccacttgcaaaagcagagtttcataaccaacttgcaagctttggattgtgctgcatcactgggaatgaagttaagaaaatcaaatattaccaaagatgtgtacagcctatgtcatataagcctcaaggatttctcccttcaaggttactgctttctttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005623 GO:0005886 GO:0005911 GO:0009506 GO:0016020 GO:0030054 GO:0031224 GO:0031225 GO:0031226 GO:0044425 GO:0044459 GO:0044464 GO:0046658 GO:0055044 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

180

Amino Acids

19.6

Weight (kDa)

8.41

Isoelectric Point (pI)

48.75

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009727)

Species	Orthologous Gene IDs
malus_domestica	MD05G1345000.v1.1
rosa_chinensis	RchiOBHm_Chr5g0060961
rosa_laevigata	RLG00000028318 RLG00000032438
rosa_multiflora	Rmu_co8107644.1_g000001 Rmu_co8229399.1_g000001 Rmu_sc0000316.1_g000006 Rmu_sc0000640.1_g000014 Rmu_sc0007627.1_g000004 Rmu_sc0010917.1_g000006
rosa_roxburghii	Rroxscaffold_152G00434550 Rroxscaffold_2G00100700 Rroxscaffold_2G00103070 Rroxscaffold_5G00366020
rosa_samantha	Rh4CG162900 Rh5AG329700 Rh5AG398100 Rh5BG410900 Rh5CG436000 Rh5DG425300 Rh5DG425400 Rh6DG389100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	24
AcoI	YGGCCR	2 cut(s)	21, 363
AfaI	GTAC	2 cut(s)	361, 485
AflIII	ACRYGT	2 cut(s)	68, 310
AgsI	TTSAA	2 cut(s)	111, 524
AjnI	CCWGG	1 cut(s)	288
AluBI	AGCT	4 cut(s)	92, 353, 375, 422
AluI	AGCT	4 cut(s)	92, 353, 375, 422
Alw21I	GWGCWC	2 cut(s)	64, 134
AoxI	GGCC	2 cut(s)	21, 363
ApeKI	GCWGC	2 cut(s)	92, 434
ArsI	GACNNNNNNTTYG	2 cut(s)	180, 212
Asp700I	GAANNNNTTC	1 cut(s)	106
BbsI	GAAGAC	1 cut(s)	286
Bbv12I	GWGCWC	2 cut(s)	64, 134
BbvI	GCAGC	2 cut(s)	79, 421
BceAI	ACGGC	1 cut(s)	378
BciT130I	CCWGG	1 cut(s)	290
BclI	TGATCA	1 cut(s)	160
BisI	GCNGC	3 cut(s)	24, 93, 435
BlsI	GCNGC	3 cut(s)	25, 94, 436
Bme1390I	CCNGG	1 cut(s)	290
BmrFI	CCNGG	1 cut(s)	290
BmrI	ACTGGG	1 cut(s)	452
BmsI	GCATC	1 cut(s)	446
BmuI	ACTGGG	1 cut(s)	452
BoxI	GACNNNNGTC	1 cut(s)	141
BpiI	GAAGAC	1 cut(s)	286
BpuEI	CTTGAG	1 cut(s)	491
BsaJI	CCNNGG	3 cut(s)	237, 288, 366
Bse1I	ACTGG	1 cut(s)	447
BseBI	CCWGG	1 cut(s)	290
BseDI	CCNNGG	3 cut(s)	237, 288, 366
BseGI	GGATG	1 cut(s)	337
BseNI	ACTGG	1 cut(s)	447
BseXI	GCAGC	2 cut(s)	79, 421
BshFI	GGCC	2 cut(s)	23, 365
BsiHKAI	GWGCWC	2 cut(s)	64, 134
BslFI	GGGAC	1 cut(s)	267
BsmFI	GGGAC	1 cut(s)	267
BsmI	GAATGC	2 cut(s)	59, 82
BsnI	GGCC	2 cut(s)	23, 365
Bsp1286I	GDGCHC	2 cut(s)	64, 134
Bsp1407I	TGTACA	1 cut(s)	483
Bsp143I	GATC	2 cut(s)	121, 160
Bsp19I	CCATGG	1 cut(s)	366
BspACI	CCGC	1 cut(s)	24
BspANI	GGCC	2 cut(s)	23, 365
BsrGI	TGTACA	1 cut(s)	483
BsrI	ACTGG	1 cut(s)	447
BssECI	CCNNGG	3 cut(s)	237, 288, 366
BssMI	GATC	2 cut(s)	121, 160
BssT1I	CCWWGG	2 cut(s)	237, 366
Bst2UI	CCWGG	1 cut(s)	290
Bst4CI	ACNGT	1 cut(s)	140
BstAUI	TGTACA	1 cut(s)	483
BstC8I	GCNNGC	4 cut(s)	206, 210, 355, 420
BstDEI	CTNAG	1 cut(s)	248
BstDSI	CCRYGG	1 cut(s)	366
BstF5I	GGATG	1 cut(s)	337
BstKTI	GATC	2 cut(s)	124, 163
BstMBI	GATC	2 cut(s)	121, 160
BstNI	CCWGG	1 cut(s)	290
BstNSI	RCATGY	2 cut(s)	72, 314
BstPAI	GACNNNNGTC	1 cut(s)	141
BstSCI	CCNGG	1 cut(s)	288
BstV1I	GCAGC	2 cut(s)	79, 421
BstV2I	GAAGAC	1 cut(s)	286
BstXI	CCANNNNNNTGG	1 cut(s)	19
BsuRI	GGCC	2 cut(s)	23, 365
BtgI	CCRYGG	1 cut(s)	366
BtsCI	GGATG	1 cut(s)	337
BtsIMutI	CAGTG	1 cut(s)	440
Cac8I	GCNNGC	4 cut(s)	206, 210, 355, 420
Csp6I	GTAC	2 cut(s)	360, 484
CviAII	CATG	5 cut(s)	69, 146, 233, 311, 367
CviQI	GTAC	2 cut(s)	360, 484
DdeI	CTNAG	1 cut(s)	248
DpnI	GATC	2 cut(s)	123, 162
DpnII	GATC	2 cut(s)	121, 160
EaeI	YGGCCR	2 cut(s)	21, 363
Eco130I	CCWWGG	2 cut(s)	237, 366
EcoRII	CCWGG	1 cut(s)	288
EcoT14I	CCWWGG	2 cut(s)	237, 366
ErhI	CCWWGG	2 cut(s)	237, 366
FaeI	CATG	5 cut(s)	72, 149, 236, 314, 370
FaqI	GGGAC	1 cut(s)	267
FatI	CATG	5 cut(s)	68, 145, 232, 310, 366
FbaI	TGATCA	1 cut(s)	160
Fnu4HI	GCNGC	3 cut(s)	24, 93, 435
FokI	GGATG	1 cut(s)	344
Fsp4HI	GCNGC	3 cut(s)	24, 93, 435
GluI	GCNGC	3 cut(s)	24, 93, 435
HaeIII	GGCC	2 cut(s)	23, 365
Hin1II	CATG	5 cut(s)	72, 149, 236, 314, 370
HindIII	AAGCTT	1 cut(s)	420
HinfI	GANTC	2 cut(s)	174, 255
Hpy166II	GTNNAC	2 cut(s)	218, 484
Hpy188I	TCNGA	2 cut(s)	75, 121
Hpy8I	GTNNAC	2 cut(s)	218, 484
HpyAV	CCTTC	3 cut(s)	209, 237, 530
HpyCH4III	ACNGT	1 cut(s)	140
HpyCH4V	TGCA	6 cut(s)	186, 267, 317, 391, 418, 437
HpyF3I	CTNAG	1 cut(s)	248
Hsp92II	CATG	5 cut(s)	72, 149, 236, 314, 370
Ksp22I	TGATCA	1 cut(s)	160
Kzo9I	GATC	2 cut(s)	121, 160
LpnPI	CCDG	8 cut(s)	57, 171, 190, 194, 275, 302, 359, 428
Lsp1109I	GCAGC	2 cut(s)	79, 421
LweI	GCATC	1 cut(s)	446
MaeIII	GTNAC	1 cut(s)	527
MalI	GATC	2 cut(s)	123, 162
MboI	GATC	2 cut(s)	121, 160
MboII	GAAGA	2 cut(s)	46, 286
MhlI	GDGCHC	2 cut(s)	64, 134
MluCI	AATT	2 cut(s)	102, 262
MlyI	GAGTC	2 cut(s)	183, 249
MnlI	CCTC	1 cut(s)	515
MroXI	GAANNNNTTC	1 cut(s)	106
MseI	TTAA	2 cut(s)	273, 455
MspR9I	CCNGG	1 cut(s)	290
Mva1269I	GAATGC	2 cut(s)	59, 82
MvaI	CCWGG	1 cut(s)	290
NcoI	CCATGG	1 cut(s)	366
NdeII	GATC	2 cut(s)	121, 160
NlaIII	CATG	5 cut(s)	72, 149, 236, 314, 370
NmeAIII	GCCGAG	1 cut(s)	300
NspI	RCATGY	2 cut(s)	72, 314
PciI	ACATGT	2 cut(s)	68, 310
PctI	GAATGC	2 cut(s)	59, 82
PdmI	GAANNNNTTC	1 cut(s)	106
PkrI	GCNGC	3 cut(s)	25, 94, 436
PleI	GAGTC	2 cut(s)	182, 249
PpsI	GAGTC	2 cut(s)	182, 249
PscI	ACATGT	2 cut(s)	68, 310
PshAI	GACNNNNGTC	1 cut(s)	141
Psp6I	CCWGG	1 cut(s)	288
PspGI	CCWGG	1 cut(s)	288
RsaI	GTAC	2 cut(s)	361, 485
RsaNI	GTAC	2 cut(s)	360, 484
SaqAI	TTAA	2 cut(s)	273, 455
SatI	GCNGC	3 cut(s)	24, 93, 435
Sau3AI	GATC	2 cut(s)	121, 160
SchI	GAGTC	2 cut(s)	183, 249
ScrFI	CCNGG	1 cut(s)	290
SduI	GDGCHC	2 cut(s)	64, 134
SetI	ASST	7 cut(s)	94, 160, 282, 355, 377, 424, 529
SfaNI	GCATC	1 cut(s)	446
SmlI	CTYRAG	1 cut(s)	506
SmoI	CTYRAG	1 cut(s)	506
Sse9I	AATT	2 cut(s)	102, 262
SsiI	CCGC	1 cut(s)	24
SspI	AATATT	2 cut(s)	193, 469
StyD4I	CCNGG	1 cut(s)	288
StyI	CCWWGG	2 cut(s)	237, 366
TaaI	ACNGT	1 cut(s)	140
TasI	AATT	2 cut(s)	102, 262
TatI	WGTACW	1 cut(s)	483
TauI	GCSGC	1 cut(s)	26
Tru1I	TTAA	2 cut(s)	273, 455
Tru9I	TTAA	2 cut(s)	273, 455
TscAI	CASTG	1 cut(s)	447
TseI	GCWGC	2 cut(s)	92, 434
TspDTI	ATGAA	3 cut(s)	320, 394, 464
TspRI	CASTG	1 cut(s)	447
XceI	RCATGY	2 cut(s)	72, 314
XmnI	GAANNNNTTC	1 cut(s)	106

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.