Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8107644.1

Orthogroup ID

OG0009727

Physical Location & Seq

Genomic Coordinates Reverse (-)

6 .. 374

Gene Structure 369 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8107644.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 369 bp

atggagttgtggttgggcagctcatcgcactatatgcttcctagaaagagacaagtgggcggagaggttgtagtagaagaaggggaaccagatttcgccaacgaatctccaatcaagaagctttgcaccgacgaatctaagggcagtgactgcaaaaacactggtaacagcaatatcagcagcagcaacagtagcagcagcgtcaagccgccgatcatggcgttaggaaatgggaattcaggggatattgatgaggatctccacagccggcagcttgctgtgtacggccgtgagacgatgaggcggctctttgcctccaacattcttgtctctgggatgcaaggccttggtgccgagattggtatgtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04120 ko05012 map04120 map05012

Pfam Domains

Protein Families

E1_4HB E1_FCCH E1_UFD ThiF UBA_e1_thiolCys

Protein Analysis

122

Amino Acids

13.09

Weight (kDa)

5.12

Isoelectric Point (pI)

58.73

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009727)

Species	Orthologous Gene IDs
malus_domestica	MD05G1345000.v1.1
rosa_chinensis	RchiOBHm_Chr5g0060961
rosa_laevigata	RLG00000028318 RLG00000032438
rosa_multiflora	Rmu_co8107644.1_g000001 Rmu_co8229399.1_g000001 Rmu_sc0000316.1_g000006 Rmu_sc0000640.1_g000014 Rmu_sc0007627.1_g000004 Rmu_sc0010917.1_g000006
rosa_roxburghii	Rroxscaffold_152G00434550 Rroxscaffold_2G00100700 Rroxscaffold_2G00103070 Rroxscaffold_5G00366020
rosa_samantha	Rh4CG162900 Rh5AG329700 Rh5AG398100 Rh5BG410900 Rh5CG436000 Rh5DG425300 Rh5DG425400 Rh6DG389100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	350
AciI	CCGC	3 cut(s)	60, 209, 304
AclWI	GGATC	1 cut(s)	264
AcoI	YGGCCR	1 cut(s)	286
AcsI	RAATTY	1 cut(s)	235
AfaI	GTAC	1 cut(s)	284
AluBI	AGCT	3 cut(s)	21, 121, 274
AluI	AGCT	3 cut(s)	21, 121, 274
Alw26I	GTCTC	3 cut(s)	43, 287, 334
AlwI	GGATC	1 cut(s)	264
AlwNI	CAGNNNCTG	1 cut(s)	150
AoxI	GGCC	2 cut(s)	286, 343
ApeKI	GCWGC	6 cut(s)	18, 180, 183, 195, 198, 271
ApoI	RAATTY	1 cut(s)	235
BanI	GGYRCC	1 cut(s)	350
BbvI	GCAGC	6 cut(s)	30, 192, 195, 207, 210, 283
BceAI	ACGGC	2 cut(s)	273, 301
BcoDI	GTCTC	3 cut(s)	43, 287, 334
BfaI	CTAG	1 cut(s)	42
BisI	GCNGC	8 cut(s)	19, 181, 184, 196, 199, 209, 272, 305
BlsI	GCNGC	8 cut(s)	20, 182, 185, 197, 200, 210, 273, 306
BmiI	GGNNCC	2 cut(s)	87, 352
BmsI	GCATC	1 cut(s)	327
BsaBI	GATNNNNATC	1 cut(s)	255
BsaJI	CCNNGG	1 cut(s)	346
BsaXI	ACNNNNNCTCC	3 cut(s)	26, 54, 84
Bse118I	RCCGGY	1 cut(s)	267
Bse1I	ACTGG	1 cut(s)	166
Bse8I	GATNNNNATC	1 cut(s)	255
BseDI	CCNNGG	1 cut(s)	346
BseGI	GGATG	1 cut(s)	342
BseJI	GATNNNNATC	1 cut(s)	255
BseNI	ACTGG	1 cut(s)	166
BseX3I	CGGCCG	1 cut(s)	286
BseXI	GCAGC	6 cut(s)	30, 192, 195, 207, 210, 283
Bsh1285I	CGRYCG	1 cut(s)	289
BshFI	GGCC	2 cut(s)	288, 345
BshNI	GGYRCC	1 cut(s)	350
BsiEI	CGRYCG	1 cut(s)	289
BsiSI	CCGG	1 cut(s)	268
BsmAI	GTCTC	3 cut(s)	43, 287, 334
BsmBI	CGTCTC	1 cut(s)	287
BsnI	GGCC	2 cut(s)	288, 345
Bsp143I	GATC	2 cut(s)	213, 256
BspACI	CCGC	3 cut(s)	60, 209, 304
BspANI	GGCC	2 cut(s)	288, 345
BspLI	GGNNCC	2 cut(s)	87, 352
BspPI	GGATC	1 cut(s)	264
BspT107I	GGYRCC	1 cut(s)	350
BsrFI	RCCGGY	1 cut(s)	267
BsrI	ACTGG	1 cut(s)	166
BssAI	RCCGGY	1 cut(s)	267
BssECI	CCNNGG	1 cut(s)	346
BssMI	GATC	2 cut(s)	213, 256
BssT1I	CCWWGG	1 cut(s)	346
Bst4CI	ACNGT	1 cut(s)	191
BstAPI	GCANNNNNTGC	2 cut(s)	34, 150
BstC8I	GCNNGC	2 cut(s)	269, 276
BstDEI	CTNAG	1 cut(s)	138
BstF5I	GGATG	1 cut(s)	342
BstKTI	GATC	2 cut(s)	216, 259
BstMAI	GTCTC	3 cut(s)	43, 287, 334
BstMBI	GATC	2 cut(s)	213, 256
BstMCI	CGRYCG	1 cut(s)	289
BstMWI	GCNNNNNNNGC	4 cut(s)	34, 150, 177, 192
BstV1I	GCAGC	6 cut(s)	30, 192, 195, 207, 210, 283
BstX2I	RGATCY	1 cut(s)	256
BstYI	RGATCY	1 cut(s)	256
BstZI	CGGCCG	1 cut(s)	286
BsuRI	GGCC	2 cut(s)	288, 345
BtgZI	GCGATG	1 cut(s)	9
BtsCI	GGATG	1 cut(s)	342
BtsI	GCAGTG	1 cut(s)	151
BtsIMutI	CAGTG	2 cut(s)	151, 159
Cac8I	GCNNGC	2 cut(s)	269, 276
CaiI	CAGNNNCTG	1 cut(s)	150
Cfr10I	RCCGGY	1 cut(s)	267
CseI	GACGC	1 cut(s)	190
Csp6I	GTAC	1 cut(s)	283
CviAII	CATG	1 cut(s)	217
CviJI	RGCY	8 cut(s)	21, 121, 208, 267, 274, 288, 307, 345
CviKI_1	RGCY	8 cut(s)	21, 121, 208, 267, 274, 288, 307, 345
CviQI	GTAC	1 cut(s)	283
DdeI	CTNAG	1 cut(s)	138
DpnI	GATC	2 cut(s)	215, 258
DpnII	GATC	2 cut(s)	213, 256
EaeI	YGGCCR	1 cut(s)	286
EagI	CGGCCG	1 cut(s)	286
EciI	GGCGGA	1 cut(s)	75
EclXI	CGGCCG	1 cut(s)	286
Eco130I	CCWWGG	1 cut(s)	346
Eco147I	AGGCCT	1 cut(s)	345
Eco52I	CGGCCG	1 cut(s)	286
EcoRI	GAATTC	1 cut(s)	235
EcoT14I	CCWWGG	1 cut(s)	346
ErhI	CCWWGG	1 cut(s)	346
Esp3I	CGTCTC	1 cut(s)	287
FaeI	CATG	1 cut(s)	220
FaiI	YATR	4 cut(s)	33, 35, 218, 365
FatI	CATG	1 cut(s)	216
Fnu4HI	GCNGC	8 cut(s)	19, 181, 184, 196, 199, 209, 272, 305
FokI	GGATG	1 cut(s)	349
Fsp4HI	GCNGC	8 cut(s)	19, 181, 184, 196, 199, 209, 272, 305
FspBI	CTAG	1 cut(s)	42
GluI	GCNGC	8 cut(s)	19, 181, 184, 196, 199, 209, 272, 305
HaeIII	GGCC	2 cut(s)	288, 345
HapII	CCGG	1 cut(s)	268
HgaI	GACGC	1 cut(s)	190
Hin1II	CATG	1 cut(s)	220
HindIII	AAGCTT	1 cut(s)	119
HinfI	GANTC	2 cut(s)	104, 134
HpaII	CCGG	1 cut(s)	268
Hpy166II	GTNNAC	1 cut(s)	283
Hpy188III	TCNNGA	1 cut(s)	115
Hpy8I	GTNNAC	1 cut(s)	283
Hpy99I	CGWCG	1 cut(s)	134
HpyAV	CCTTC	1 cut(s)	74
HpyCH4III	ACNGT	1 cut(s)	191
HpyCH4V	TGCA	3 cut(s)	126, 153, 340
HpyF10VI	GCNNNNNNNGC	4 cut(s)	34, 150, 177, 192
HpyF3I	CTNAG	1 cut(s)	138
Hsp92II	CATG	1 cut(s)	220
KroI	GCCGGC	1 cut(s)	267
KroNI	GCCGGC	1 cut(s)	269
Kzo9I	GATC	2 cut(s)	213, 256
LpnPI	CCDG	5 cut(s)	102, 147, 225, 281, 318
Lsp1109I	GCAGC	6 cut(s)	30, 192, 195, 207, 210, 283
LweI	GCATC	1 cut(s)	327
MaeI	CTAG	1 cut(s)	42
MaeIII	GTNAC	2 cut(s)	146, 164
MalI	GATC	2 cut(s)	215, 258
MboI	GATC	2 cut(s)	213, 256
MboII	GAAGA	1 cut(s)	89
MflI	RGATCY	1 cut(s)	256
MluCI	AATT	1 cut(s)	235
MmeI	TCCRAC	1 cut(s)	342
MnlI	CCTC	4 cut(s)	58, 247, 294, 325
MroNI	GCCGGC	1 cut(s)	267
MspI	CCGG	1 cut(s)	268
MwoI	GCNNNNNNNGC	4 cut(s)	34, 150, 177, 192
NaeI	GCCGGC	1 cut(s)	269
NdeII	GATC	2 cut(s)	213, 256
NgoMIV	GCCGGC	1 cut(s)	267
NlaIII	CATG	1 cut(s)	220
NlaIV	GGNNCC	2 cut(s)	87, 352
NmuCI	GTSAC	1 cut(s)	146
PceI	AGGCCT	1 cut(s)	345
PdiI	GCCGGC	1 cut(s)	269
PfeI	GAWTC	2 cut(s)	104, 134
PkrI	GCNGC	8 cut(s)	20, 182, 185, 197, 200, 210, 273, 306
PspN4I	GGNNCC	2 cut(s)	87, 352
PstNI	CAGNNNCTG	1 cut(s)	150
PsuI	RGATCY	1 cut(s)	256
RsaI	GTAC	1 cut(s)	284
RsaNI	GTAC	1 cut(s)	283
SatI	GCNGC	8 cut(s)	19, 181, 184, 196, 199, 209, 272, 305
Sau3AI	GATC	2 cut(s)	213, 256
SetI	ASST	4 cut(s)	23, 69, 123, 276
SfaNI	GCATC	1 cut(s)	327
Sse9I	AATT	1 cut(s)	235
SseBI	AGGCCT	1 cut(s)	345
SsiI	CCGC	3 cut(s)	60, 209, 304
SspMI	CTAG	1 cut(s)	42
StuI	AGGCCT	1 cut(s)	345
StyI	CCWWGG	1 cut(s)	346
TaaI	ACNGT	1 cut(s)	191
TasI	AATT	1 cut(s)	235
TauI	GCSGC	2 cut(s)	211, 307
TfiI	GAWTC	2 cut(s)	104, 134
TscAI	CASTG	2 cut(s)	151, 166
TseFI	GTSAC	1 cut(s)	146
TseI	GCWGC	6 cut(s)	18, 180, 183, 195, 198, 271
Tsp45I	GTSAC	1 cut(s)	146
TspRI	CASTG	2 cut(s)	151, 166
XapI	RAATTY	1 cut(s)	235
XspI	CTAG	1 cut(s)	42

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.