Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5D

Orthogroup ID

OG0009727

Physical Location & Seq

Genomic Coordinates Forward (+)

67910166 .. 67911159

Gene Structure 994 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5DG425400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 426 bp

ATGAATGAATTAGGAGTGCCGGCGAAGAGCTCCGATGACGCTTCCAGCGACGAGGTCAAAGAAATCGTCTCTCTCTCCTCCCAGCCTTCATCTGCGACCAATTCTCCGTCGTTGGCTGGGTTCGATGGCCTGAAGATTCAGTGCGCCGATCAAAGCCTCCTCTTCGTCGGTGAGACTCACGAAGTTCCTGTTGGATCACTACTAGTCTTGAACCGCGACCGGAAAATCTTTGATGCCTTCGAGAAAGCAGGAGCGCTGATGACCGAGTCCGATATAGCCGGATTTTGCTCGAGAATTTCGATTGCAGTCTCGAACGCGAGCTCGGCCTCAATGAGACAGACCGCCGATTTGAACCTTCTCGGGCCACCAAATCTCAATCTAAACTTCAAATGCTCTGAGAAGAAGATTGGTTTCCATGGATTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005102 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0006621 GO:0008104 GO:0008150 GO:0009889 GO:0009987 GO:0010556 GO:0010869 GO:0010941 GO:0012505 GO:0019222 GO:0031323 GO:0032507 GO:0033036 GO:0033365 GO:0034613 GO:0035437 GO:0042981 GO:0043067 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0045185 GO:0048471 GO:0050789 GO:0050794 GO:0051179 GO:0051235 GO:0051641 GO:0051651 GO:0060255 GO:0065007 GO:0065008 GO:0070727 GO:0070972 GO:0072595 GO:2000209

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Ank_2 Ank_4 GPCR_chapero_1

Protein Analysis

141

Amino Acids

14.91

Weight (kDa)

4.91

Isoelectric Point (pI)

32.73

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ANKRD13_C	PF11904	37 - 101	1.1e-10	ANKRD13 C-terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009727)

Species	Orthologous Gene IDs
malus_domestica	MD05G1345000.v1.1
rosa_chinensis	RchiOBHm_Chr5g0060961
rosa_laevigata	RLG00000028318 RLG00000032438
rosa_multiflora	Rmu_co8107644.1_g000001 Rmu_co8229399.1_g000001 Rmu_sc0000316.1_g000006 Rmu_sc0000640.1_g000014 Rmu_sc0007627.1_g000004 Rmu_sc0010917.1_g000006
rosa_roxburghii	Rroxscaffold_152G00434550 Rroxscaffold_2G00100700 Rroxscaffold_2G00103070 Rroxscaffold_5G00366020
rosa_samantha	Rh4CG162900 Rh5AG329700 Rh5AG398100 Rh5BG410900 Rh5CG436000 Rh5DG425300 Rh5DG425400 Rh6DG389100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	216, 317
AciI	CCGC	2 cut(s)	214, 342
AclWI	GGATC	1 cut(s)	202
AcsI	RAATTY	1 cut(s)	294
AcuI	CTGAAG	1 cut(s)	152
AfeI	AGCGCT	1 cut(s)	255
AgsI	TTSAA	3 cut(s)	211, 352, 388
AhlI	ACTAGT	1 cut(s)	202
AjuI	GAANNNNNNNTTGG	2 cut(s)	174, 206
AluBI	AGCT	2 cut(s)	30, 321
AluI	AGCT	2 cut(s)	30, 321
Alw21I	GWGCWC	2 cut(s)	32, 323
Alw26I	GTCTC	4 cut(s)	73, 167, 313, 328
AlwI	GGATC	1 cut(s)	202
Ama87I	CYCGRG	2 cut(s)	289, 359
Aor51HI	AGCGCT	1 cut(s)	255
AoxI	GGCC	3 cut(s)	127, 324, 362
ApoI	RAATTY	1 cut(s)	294
ArsI	GACNNNNNNTTYG	4 cut(s)	51, 83, 331, 363
AspLEI	GCGC	2 cut(s)	146, 256
AspS9I	GGNCC	1 cut(s)	362
AsuHPI	GGTGA	1 cut(s)	182
AvaI	CYCGRG	2 cut(s)	289, 359
BanII	GRGCYC	2 cut(s)	32, 323
Bbv12I	GWGCWC	2 cut(s)	32, 323
BccI	CCATC	1 cut(s)	119
BcoDI	GTCTC	4 cut(s)	73, 167, 313, 328
BcuI	ACTAGT	1 cut(s)	202
BfaI	CTAG	1 cut(s)	203
BfoI	RGCGCY	1 cut(s)	257
BmeT110I	CYCGRG	2 cut(s)	289, 359
BmgT120I	GGNCC	1 cut(s)	362
BmsI	GCATC	1 cut(s)	223
BsaJI	CCNNGG	1 cut(s)	415
BsaWI	WCCGGW	1 cut(s)	219
BsaXI	ACNNNNNCTCC	2 cut(s)	88, 118
Bse118I	RCCGGY	1 cut(s)	19
BseDI	CCNNGG	1 cut(s)	415
BseMII	CTCAG	1 cut(s)	387
BseRI	GAGGAG	2 cut(s)	67, 149
BseYI	CCCAGC	2 cut(s)	81, 116
Bsh1236I	CGCG	2 cut(s)	216, 317
Bsh1285I	CGRYCG	1 cut(s)	220
BshFI	GGCC	3 cut(s)	129, 326, 364
BsiEI	CGRYCG	1 cut(s)	220
BsiHKAI	GWGCWC	2 cut(s)	32, 323
BsiHKCI	CYCGRG	2 cut(s)	289, 359
BsiSI	CCGG	3 cut(s)	20, 220, 279
BsmAI	GTCTC	4 cut(s)	73, 167, 313, 328
BsmBI	CGTCTC	1 cut(s)	73
BsnI	GGCC	3 cut(s)	129, 326, 364
BsoBI	CYCGRG	2 cut(s)	289, 359
Bsp1286I	GDGCHC	2 cut(s)	32, 323
Bsp143I	GATC	2 cut(s)	148, 194
Bsp19I	CCATGG	1 cut(s)	415
BspACI	CCGC	2 cut(s)	214, 342
BspANI	GGCC	3 cut(s)	129, 326, 364
BspCNI	CTCAG	1 cut(s)	388
BspFNI	CGCG	2 cut(s)	216, 317
BspPI	GGATC	1 cut(s)	202
BspQI	GCTCTTC	1 cut(s)	20
BsrFI	RCCGGY	1 cut(s)	19
BssAI	RCCGGY	1 cut(s)	19
BssECI	CCNNGG	1 cut(s)	415
BssMI	GATC	2 cut(s)	148, 194
BssT1I	CCWWGG	1 cut(s)	415
Bst6I	CTCTTC	2 cut(s)	20, 167
BstC8I	GCNNGC	2 cut(s)	21, 319
BstDEI	CTNAG	1 cut(s)	396
BstDSI	CCRYGG	1 cut(s)	415
BstFNI	CGCG	2 cut(s)	216, 317
BstH2I	RGCGCY	1 cut(s)	257
BstHHI	GCGC	2 cut(s)	146, 256
BstKTI	GATC	2 cut(s)	151, 197
BstMAI	GTCTC	4 cut(s)	73, 167, 313, 328
BstMBI	GATC	2 cut(s)	148, 194
BstMCI	CGRYCG	1 cut(s)	220
BstMWI	GCNNNNNNNGC	1 cut(s)	323
BstUI	CGCG	2 cut(s)	216, 317
BsuRI	GGCC	3 cut(s)	129, 326, 364
BtgI	CCRYGG	1 cut(s)	415
BtsIMutI	CAGTG	1 cut(s)	146
Cac8I	GCNNGC	2 cut(s)	21, 319
CfoI	GCGC	2 cut(s)	146, 256
Cfr10I	RCCGGY	1 cut(s)	19
Cfr13I	GGNCC	1 cut(s)	362
CseI	GACGC	1 cut(s)	47
CviAII	CATG	1 cut(s)	416
CviJI	RGCY	9 cut(s)	30, 85, 116, 129, 156, 278, 321, 326, 364
CviKI_1	RGCY	9 cut(s)	30, 85, 116, 129, 156, 278, 321, 326, 364
DdeI	CTNAG	1 cut(s)	396
DpnI	GATC	2 cut(s)	150, 196
DpnII	GATC	2 cut(s)	148, 194
Eam1104I	CTCTTC	2 cut(s)	20, 167
EarI	CTCTTC	2 cut(s)	20, 167
Ecl136II	GAGCTC	2 cut(s)	30, 321
Eco130I	CCWWGG	1 cut(s)	415
Eco24I	GRGCYC	2 cut(s)	32, 323
Eco47III	AGCGCT	1 cut(s)	255
Eco53kI	GAGCTC	2 cut(s)	30, 321
Eco57I	CTGAAG	1 cut(s)	152
Eco88I	CYCGRG	2 cut(s)	289, 359
EcoICRI	GAGCTC	2 cut(s)	30, 321
EcoT14I	CCWWGG	1 cut(s)	415
EcoT38I	GRGCYC	2 cut(s)	32, 323
ErhI	CCWWGG	1 cut(s)	415
Esp3I	CGTCTC	1 cut(s)	73
FaeI	CATG	1 cut(s)	419
FaiI	YATR	2 cut(s)	275, 417
FatI	CATG	1 cut(s)	415
FriOI	GRGCYC	2 cut(s)	32, 323
FspBI	CTAG	1 cut(s)	203
GlaI	GCGC	2 cut(s)	145, 255
GsaI	CCCAGC	2 cut(s)	85, 120
HaeII	RGCGCY	1 cut(s)	257
HaeIII	GGCC	3 cut(s)	129, 326, 364
HapII	CCGG	3 cut(s)	20, 220, 279
HgaI	GACGC	1 cut(s)	47
HhaI	GCGC	2 cut(s)	146, 256
Hin1II	CATG	1 cut(s)	419
Hin6I	GCGC	2 cut(s)	144, 254
HinP1I	GCGC	2 cut(s)	144, 254
HinfI	GANTC	4 cut(s)	136, 175, 266, 420
HpaII	CCGG	3 cut(s)	20, 220, 279
HphI	GGTGA	1 cut(s)	182
Hpy188I	TCNGA	4 cut(s)	34, 271, 397, 425
Hpy188III	TCNNGA	5 cut(s)	179, 208, 241, 291, 310
Hpy99I	CGWCG	3 cut(s)	53, 112, 170
HpyAV	CCTTC	3 cut(s)	96, 247, 365
HpyCH4V	TGCA	1 cut(s)	305
HpyF10VI	GCNNNNNNNGC	1 cut(s)	323
HpyF3I	CTNAG	1 cut(s)	396
Hsp92II	CATG	1 cut(s)	419
HspAI	GCGC	2 cut(s)	144, 254
KroI	GCCGGC	1 cut(s)	19
KroNI	GCCGGC	1 cut(s)	21
Kzo9I	GATC	2 cut(s)	148, 194
LguI	GCTCTTC	1 cut(s)	20
LmnI	GCTCC	2 cut(s)	35, 251
LpnPI	CCDG	9 cut(s)	33, 58, 95, 102, 143, 201, 233, 234, 292
LweI	GCATC	1 cut(s)	223
MaeI	CTAG	1 cut(s)	203
MalI	GATC	2 cut(s)	150, 196
MboI	GATC	2 cut(s)	148, 194
MboII	GAAGA	5 cut(s)	37, 145, 154, 412, 415
MhlI	GDGCHC	2 cut(s)	32, 323
MluCI	AATT	3 cut(s)	8, 100, 294
MlyI	GAGTC	2 cut(s)	169, 275
MmeI	TCCRAC	1 cut(s)	172
MnlI	CCTC	5 cut(s)	46, 88, 167, 170, 337
MroNI	GCCGGC	1 cut(s)	19
MspI	CCGG	3 cut(s)	20, 220, 279
MvnI	CGCG	2 cut(s)	216, 317
MwoI	GCNNNNNNNGC	1 cut(s)	323
NaeI	GCCGGC	1 cut(s)	21
NcoI	CCATGG	1 cut(s)	415
NdeII	GATC	2 cut(s)	148, 194
NgoMIV	GCCGGC	1 cut(s)	19
NlaIII	CATG	1 cut(s)	419
NmeAIII	GCCGAG	1 cut(s)	302
PaeR7I	CTCGAG	1 cut(s)	289
PciSI	GCTCTTC	1 cut(s)	20
PcsI	WCGNNNNNNNCGW	2 cut(s)	45, 296
PdiI	GCCGGC	1 cut(s)	21
PfeI	GAWTC	2 cut(s)	136, 420
PflFI	GACNNNGTC	2 cut(s)	53, 265
PleI	GAGTC	2 cut(s)	169, 274
PpsI	GAGTC	2 cut(s)	169, 274
Psp124BI	GAGCTC	2 cut(s)	32, 323
PspFI	CCCAGC	2 cut(s)	81, 116
PspPI	GGNCC	1 cut(s)	362
PsyI	GACNNNGTC	2 cut(s)	53, 265
SacI	GAGCTC	2 cut(s)	32, 323
SapI	GCTCTTC	1 cut(s)	20
Sau3AI	GATC	2 cut(s)	148, 194
Sau96I	GGNCC	1 cut(s)	362
SchI	GAGTC	2 cut(s)	169, 275
SduI	GDGCHC	2 cut(s)	32, 323
SetI	ASST	4 cut(s)	32, 57, 323, 357
SfaNI	GCATC	1 cut(s)	223
Sfr274I	CTCGAG	1 cut(s)	289
SlaI	CTCGAG	1 cut(s)	289
SmlI	CTYRAG	1 cut(s)	289
SmoI	CTYRAG	1 cut(s)	289
SpeI	ACTAGT	1 cut(s)	202
Sse9I	AATT	3 cut(s)	8, 100, 294
SsiI	CCGC	2 cut(s)	214, 342
SspMI	CTAG	1 cut(s)	203
SstI	GAGCTC	2 cut(s)	32, 323
StyI	CCWWGG	1 cut(s)	415
TaqI	TCGA	5 cut(s)	123, 240, 290, 299, 311
TaqII	GACCGA	1 cut(s)	278
TasI	AATT	3 cut(s)	8, 100, 294
TfiI	GAWTC	2 cut(s)	136, 420
TscAI	CASTG	1 cut(s)	146
TspDTI	ATGAA	3 cut(s)	17, 21, 78
TspGWI	ACGGA	1 cut(s)	96
TspRI	CASTG	1 cut(s)	146
Tth111I	GACNNNGTC	2 cut(s)	53, 265
XapI	RAATTY	1 cut(s)	294
XhoI	CTCGAG	1 cut(s)	289
XspI	CTAG	1 cut(s)	203

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.