Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5A

Orthogroup ID

OG0009727

Physical Location & Seq

Genomic Coordinates Forward (+)

69007141 .. 69023612

Gene Structure 16472 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5AG398100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 699 bp

ATGAAACATGTTGCACTTGGCTATGGGGATGAGATAAGCAACCAGACAGCTTGCTGTACGACAATGGACAACTATGTTTCCCACTTGCAAAAGCAGAGTTTCATAAGCAACTTGCAAGCTTTGGATTGTGCTGCATCACTAGGAATGAAGTTAAGAAAATCAAATATTACCAAAGATGTGTATAGCCTATGTCATTTAAGCCTCAAGGATTTCTCCCTTCAAGCATCCGGATACCTTTTGCCAAGCTTGCATTATGATGCAATATTTGAAAGTTCACGGGTGCCGGCGAAGAGCTCTGATGACGCTTCCGGCGACGAGGTCAAAGAAATCGTCTCTCTTTCCTTCCAGCCTTCATCTGAGACCAGTTCTTCGTCGTTGGCCTGGTTCGATGGCCAGAAGATTCAGCGTGCCGATCAAAGCCTCTTCTTTGTCGGTGACGGTGACCGGAATCACGAAGTTCCTGTCGGATCACTACTCGTCCTCAACCGCGACCGGAAAATCTTCGATGCCTTCGAGAACGTAGGAGCGCCGATGACCGAGTCTGATATCGCCGGATTTTGCTCGAGAATTTCGATTGCAGTCTCGAATGCGAGCTTGGCCTCAATGAGACATACCGCCGATTCGAACCTTCTCAGGCCACCAAATCTCAATCTAAACTTCAAATGCTCTGAGAAGAAGATTGGTTTCCATGGATTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005623 GO:0005886 GO:0005911 GO:0009506 GO:0016020 GO:0030054 GO:0031224 GO:0031225 GO:0031226 GO:0044425 GO:0044459 GO:0044464 GO:0046658 GO:0055044 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

232

Amino Acids

25.4

Weight (kDa)

5.95

Isoelectric Point (pI)

44.91

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
At1g61900	PF26584	1 - 65	6.3e-28	At1g61900-like domain
ANKRD13_C	PF11904	125 - 192	3.4e-11	ANKRD13 C-terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009727)

Species	Orthologous Gene IDs
malus_domestica	MD05G1345000.v1.1
rosa_chinensis	RchiOBHm_Chr5g0060961
rosa_laevigata	RLG00000028318 RLG00000032438
rosa_multiflora	Rmu_co8107644.1_g000001 Rmu_co8229399.1_g000001 Rmu_sc0000316.1_g000006 Rmu_sc0000640.1_g000014 Rmu_sc0007627.1_g000004 Rmu_sc0010917.1_g000006
rosa_roxburghii	Rroxscaffold_152G00434550 Rroxscaffold_2G00100700 Rroxscaffold_2G00103070 Rroxscaffold_5G00366020
rosa_samantha	Rh4CG162900 Rh5AG329700 Rh5AG398100 Rh5BG410900 Rh5CG436000 Rh5DG425300 Rh5DG425400 Rh6DG389100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	280
AccII	CGCG	1 cut(s)	489
AccIII	TCCGGA	1 cut(s)	227
AciI	CCGC	2 cut(s)	487, 615
AclWI	GGATC	1 cut(s)	475
AcoI	YGGCCR	1 cut(s)	391
AcsI	RAATTY	1 cut(s)	567
AfaI	GTAC	1 cut(s)	58
AflIII	ACRYGT	1 cut(s)	7
AgsI	TTSAA	3 cut(s)	221, 269, 661
AjnI	CCWGG	1 cut(s)	380
AjuI	GAANNNNNNNTTGG	2 cut(s)	578, 610
AluBI	AGCT	5 cut(s)	50, 119, 246, 294, 594
AluI	AGCT	5 cut(s)	50, 119, 246, 294, 594
Alw21I	GWGCWC	1 cut(s)	296
Alw26I	GTCTC	4 cut(s)	337, 353, 586, 601
AlwI	GGATC	1 cut(s)	475
Ama87I	CYCGRG	1 cut(s)	562
Aor13HI	TCCGGA	1 cut(s)	227
AoxI	GGCC	4 cut(s)	378, 391, 597, 635
ApeKI	GCWGC	1 cut(s)	131
ApoI	RAATTY	1 cut(s)	567
ArsI	GACNNNNNNTTYG	6 cut(s)	315, 347, 352, 384, 447, 479
Asp700I	GAANNNNTTC	1 cut(s)	500
AspLEI	GCGC	1 cut(s)	529
AsuHPI	GGTGA	2 cut(s)	446, 452
AsuII	TTCGAA	1 cut(s)	623
AvaI	CYCGRG	1 cut(s)	562
BalI	TGGCCA	1 cut(s)	393
BanI	GGYRCC	1 cut(s)	280
BanII	GRGCYC	1 cut(s)	296
Bbv12I	GWGCWC	1 cut(s)	296
BbvI	GCAGC	1 cut(s)	118
BccI	CCATC	1 cut(s)	383
BciT130I	CCWGG	1 cut(s)	382
BciVI	GTATCC	1 cut(s)	224
BcoDI	GTCTC	4 cut(s)	337, 353, 586, 601
BfaI	CTAG	1 cut(s)	140
BfoI	RGCGCY	1 cut(s)	530
BfuI	GTATCC	1 cut(s)	224
BisI	GCNGC	1 cut(s)	132
BlsI	GCNGC	1 cut(s)	133
Bme1390I	CCNGG	1 cut(s)	382
BmeT110I	CYCGRG	1 cut(s)	562
BmiI	GGNNCC	1 cut(s)	282
BmrFI	CCNGG	1 cut(s)	382
BmsI	GCATC	4 cut(s)	143, 233, 247, 496
Bpu14I	TTCGAA	1 cut(s)	623
BpuEI	CTTGAG	1 cut(s)	188
BsaI	GGTCTC	1 cut(s)	353
BsaJI	CCNNGG	1 cut(s)	688
BsaWI	WCCGGW	3 cut(s)	227, 444, 492
Bse118I	RCCGGY	1 cut(s)	283
Bse1I	ACTGG	1 cut(s)	363
BseAI	TCCGGA	1 cut(s)	227
BseBI	CCWGG	1 cut(s)	382
BseDI	CCNNGG	1 cut(s)	688
BseGI	GGATG	2 cut(s)	34, 224
BseMII	CTCAG	3 cut(s)	348, 646, 660
BseNI	ACTGG	1 cut(s)	363
BseXI	GCAGC	1 cut(s)	118
Bsh1236I	CGCG	1 cut(s)	489
Bsh1285I	CGRYCG	1 cut(s)	493
BshFI	GGCC	4 cut(s)	380, 393, 599, 637
BshNI	GGYRCC	1 cut(s)	280
BsiEI	CGRYCG	1 cut(s)	493
BsiHKAI	GWGCWC	1 cut(s)	296
BsiHKCI	CYCGRG	1 cut(s)	562
BsiSI	CCGG	6 cut(s)	228, 284, 309, 445, 493, 552
BsmAI	GTCTC	4 cut(s)	337, 353, 586, 601
BsmBI	CGTCTC	1 cut(s)	337
BsmI	GAATGC	1 cut(s)	592
BsnI	GGCC	4 cut(s)	380, 393, 599, 637
Bso31I	GGTCTC	1 cut(s)	353
BsoBI	CYCGRG	1 cut(s)	562
Bsp119I	TTCGAA	1 cut(s)	623
Bsp1286I	GDGCHC	1 cut(s)	296
Bsp13I	TCCGGA	1 cut(s)	227
Bsp143I	GATC	2 cut(s)	412, 467
Bsp19I	CCATGG	1 cut(s)	688
BspACI	CCGC	2 cut(s)	487, 615
BspANI	GGCC	4 cut(s)	380, 393, 599, 637
BspCNI	CTCAG	3 cut(s)	349, 645, 661
BspEI	TCCGGA	1 cut(s)	227
BspFNI	CGCG	1 cut(s)	489
BspLI	GGNNCC	1 cut(s)	282
BspPI	GGATC	1 cut(s)	475
BspQI	GCTCTTC	1 cut(s)	284
BspT104I	TTCGAA	1 cut(s)	623
BspT107I	GGYRCC	1 cut(s)	280
BspTNI	GGTCTC	1 cut(s)	353
BsrFI	RCCGGY	1 cut(s)	283
BsrI	ACTGG	1 cut(s)	363
BssAI	RCCGGY	1 cut(s)	283
BssECI	CCNNGG	1 cut(s)	688
BssMI	GATC	2 cut(s)	412, 467
BssT1I	CCWWGG	1 cut(s)	688
Bst2UI	CCWGG	1 cut(s)	382
Bst4CI	ACNGT	1 cut(s)	440
Bst6I	CTCTTC	2 cut(s)	284, 428
BstBI	TTCGAA	1 cut(s)	623
BstC8I	GCNNGC	6 cut(s)	52, 117, 248, 285, 408, 592
BstDEI	CTNAG	3 cut(s)	357, 632, 669
BstDSI	CCRYGG	1 cut(s)	688
BstEII	GGTNACC	1 cut(s)	440
BstF5I	GGATG	2 cut(s)	34, 224
BstFNI	CGCG	1 cut(s)	489
BstH2I	RGCGCY	1 cut(s)	530
BstHHI	GCGC	1 cut(s)	529
BstKTI	GATC	2 cut(s)	415, 470
BstMAI	GTCTC	4 cut(s)	337, 353, 586, 601
BstMBI	GATC	2 cut(s)	412, 467
BstMCI	CGRYCG	1 cut(s)	493
BstMWI	GCNNNNNNNGC	2 cut(s)	247, 596
BstNI	CCWGG	1 cut(s)	382
BstNSI	RCATGY	1 cut(s)	11
BstPI	GGTNACC	1 cut(s)	440
BstSCI	CCNGG	1 cut(s)	380
BstUI	CGCG	1 cut(s)	489
BstV1I	GCAGC	1 cut(s)	118
BsuI	GTATCC	1 cut(s)	224
BsuRI	GGCC	4 cut(s)	380, 393, 599, 637
BtgI	CCRYGG	1 cut(s)	688
BtsCI	GGATG	2 cut(s)	34, 224
Cac8I	GCNNGC	6 cut(s)	52, 117, 248, 285, 408, 592
CfoI	GCGC	1 cut(s)	529
Cfr10I	RCCGGY	1 cut(s)	283
CseI	GACGC	1 cut(s)	311
Csp6I	GTAC	1 cut(s)	57
CviAII	CATG	2 cut(s)	8, 689
CviQI	GTAC	1 cut(s)	57
DdeI	CTNAG	3 cut(s)	357, 632, 669
DpnI	GATC	2 cut(s)	414, 469
DpnII	GATC	2 cut(s)	412, 467
EaeI	YGGCCR	1 cut(s)	391
Eam1104I	CTCTTC	2 cut(s)	284, 428
EarI	CTCTTC	2 cut(s)	284, 428
Ecl136II	GAGCTC	1 cut(s)	294
Eco130I	CCWWGG	1 cut(s)	688
Eco24I	GRGCYC	1 cut(s)	296
Eco31I	GGTCTC	1 cut(s)	353
Eco32I	GATATC	1 cut(s)	547
Eco53kI	GAGCTC	1 cut(s)	294
Eco88I	CYCGRG	1 cut(s)	562
Eco91I	GGTNACC	1 cut(s)	440
EcoICRI	GAGCTC	1 cut(s)	294
EcoO65I	GGTNACC	1 cut(s)	440
EcoRII	CCWGG	1 cut(s)	380
EcoRV	GATATC	1 cut(s)	547
EcoT14I	CCWWGG	1 cut(s)	688
EcoT38I	GRGCYC	1 cut(s)	296
ErhI	CCWWGG	1 cut(s)	688
Esp3I	CGTCTC	1 cut(s)	337
FaeI	CATG	2 cut(s)	11, 692
FaiI	YATR	9 cut(s)	9, 24, 75, 104, 183, 190, 255, 612, 690
FatI	CATG	2 cut(s)	7, 688
Fnu4HI	GCNGC	1 cut(s)	132
FokI	GGATG	2 cut(s)	41, 211
FriOI	GRGCYC	1 cut(s)	296
Fsp4HI	GCNGC	1 cut(s)	132
FspBI	CTAG	1 cut(s)	140
GlaI	GCGC	1 cut(s)	528
GluI	GCNGC	1 cut(s)	132
HaeII	RGCGCY	1 cut(s)	530
HaeIII	GGCC	4 cut(s)	380, 393, 599, 637
HapII	CCGG	6 cut(s)	228, 284, 309, 445, 493, 552
HgaI	GACGC	1 cut(s)	311
HhaI	GCGC	1 cut(s)	529
Hin1II	CATG	2 cut(s)	11, 692
Hin6I	GCGC	1 cut(s)	527
HinP1I	GCGC	1 cut(s)	527
HindIII	AAGCTT	2 cut(s)	117, 244
HinfI	GANTC	5 cut(s)	400, 448, 539, 620, 693
HpaII	CCGG	6 cut(s)	228, 284, 309, 445, 493, 552
HphI	GGTGA	2 cut(s)	446, 452
Hpy166II	GTNNAC	1 cut(s)	275
Hpy188I	TCNGA	6 cut(s)	298, 358, 467, 544, 670, 698
Hpy188III	TCNNGA	5 cut(s)	228, 452, 514, 564, 583
Hpy8I	GTNNAC	1 cut(s)	275
Hpy99I	CGWCG	2 cut(s)	317, 376
HpyAV	CCTTC	5 cut(s)	227, 352, 360, 520, 638
HpyCH4III	ACNGT	1 cut(s)	440
HpyCH4IV	ACGT	1 cut(s)	519
HpyCH4V	TGCA	7 cut(s)	14, 88, 115, 134, 250, 260, 578
HpyF10VI	GCNNNNNNNGC	2 cut(s)	247, 596
HpyF3I	CTNAG	3 cut(s)	357, 632, 669
HpySE526I	ACGT	1 cut(s)	519
Hsp92II	CATG	2 cut(s)	11, 692
HspAI	GCGC	1 cut(s)	527
Kpn2I	TCCGGA	1 cut(s)	227
KroI	GCCGGC	1 cut(s)	283
KroNI	GCCGGC	1 cut(s)	285
Kzo9I	GATC	2 cut(s)	412, 467
LguI	GCTCTTC	1 cut(s)	284
LmnI	GCTCC	1 cut(s)	524
Lsp1109I	GCAGC	1 cut(s)	118
LweI	GCATC	4 cut(s)	143, 233, 247, 496
MaeI	CTAG	1 cut(s)	140
MaeII	ACGT	1 cut(s)	519
MaeIII	GTNAC	2 cut(s)	434, 440
MalI	GATC	2 cut(s)	414, 469
MboI	GATC	2 cut(s)	412, 467
MboII	GAAGA	7 cut(s)	301, 360, 409, 415, 493, 685, 688
MhlI	GDGCHC	1 cut(s)	296
MlsI	TGGCCA	1 cut(s)	393
MluCI	AATT	1 cut(s)	567
MluNI	TGGCCA	1 cut(s)	393
MlyI	GAGTC	1 cut(s)	548
MmeI	TCCRAC	1 cut(s)	445
MnlI	CCTC	5 cut(s)	212, 310, 431, 491, 610
Mox20I	TGGCCA	1 cut(s)	393
MroI	TCCGGA	1 cut(s)	227
MroNI	GCCGGC	1 cut(s)	283
MroXI	GAANNNNTTC	1 cut(s)	500
MscI	TGGCCA	1 cut(s)	393
MseI	TTAA	2 cut(s)	152, 197
MslI	CAYNNNNRTG	1 cut(s)	255
Msp20I	TGGCCA	1 cut(s)	393
MspI	CCGG	6 cut(s)	228, 284, 309, 445, 493, 552
MspR9I	CCNGG	1 cut(s)	382
Mva1269I	GAATGC	1 cut(s)	592
MvaI	CCWGG	1 cut(s)	382
MvnI	CGCG	1 cut(s)	489
MwoI	GCNNNNNNNGC	2 cut(s)	247, 596
NaeI	GCCGGC	1 cut(s)	285
NcoI	CCATGG	1 cut(s)	688
NdeII	GATC	2 cut(s)	412, 467
NgoMIV	GCCGGC	1 cut(s)	283
NlaIII	CATG	2 cut(s)	11, 692
NlaIV	GGNNCC	1 cut(s)	282
NmuCI	GTSAC	2 cut(s)	434, 440
NspI	RCATGY	1 cut(s)	11
NspV	TTCGAA	1 cut(s)	623
PaeR7I	CTCGAG	1 cut(s)	562
PciI	ACATGT	1 cut(s)	7
PciSI	GCTCTTC	1 cut(s)	284
PcsI	WCGNNNNNNNCGW	3 cut(s)	309, 510, 569
PctI	GAATGC	1 cut(s)	592
PdiI	GCCGGC	1 cut(s)	285
PdmI	GAANNNNTTC	1 cut(s)	500
PfeI	GAWTC	4 cut(s)	400, 448, 620, 693
PflFI	GACNNNGTC	2 cut(s)	317, 538
PkrI	GCNGC	1 cut(s)	133
PleI	GAGTC	1 cut(s)	547
PpsI	GAGTC	1 cut(s)	547
PscI	ACATGT	1 cut(s)	7
Psp124BI	GAGCTC	1 cut(s)	296
Psp6I	CCWGG	1 cut(s)	380
PspEI	GGTNACC	1 cut(s)	440
PspGI	CCWGG	1 cut(s)	380
PspN4I	GGNNCC	1 cut(s)	282
PsyI	GACNNNGTC	2 cut(s)	317, 538
RsaI	GTAC	1 cut(s)	58
RsaNI	GTAC	1 cut(s)	57
RseI	CAYNNNNRTG	1 cut(s)	255
SacI	GAGCTC	1 cut(s)	296
SapI	GCTCTTC	1 cut(s)	284
SaqAI	TTAA	2 cut(s)	152, 197
SatI	GCNGC	1 cut(s)	132
Sau3AI	GATC	2 cut(s)	412, 467
SchI	GAGTC	1 cut(s)	548
ScrFI	CCNGG	1 cut(s)	382
SduI	GDGCHC	1 cut(s)	296
SetI	ASST	9 cut(s)	52, 121, 237, 248, 296, 321, 522, 596, 630
SfaNI	GCATC	4 cut(s)	143, 233, 247, 496
Sfr274I	CTCGAG	1 cut(s)	562
SfuI	TTCGAA	1 cut(s)	623
SlaI	CTCGAG	1 cut(s)	562
SmiMI	CAYNNNNRTG	1 cut(s)	255
SmlI	CTYRAG	2 cut(s)	203, 562
SmoI	CTYRAG	2 cut(s)	203, 562
Sse9I	AATT	1 cut(s)	567
SsiI	CCGC	2 cut(s)	487, 615
SspI	AATATT	2 cut(s)	166, 264
SspMI	CTAG	1 cut(s)	140
SstI	GAGCTC	1 cut(s)	296
StyD4I	CCNGG	1 cut(s)	380
StyI	CCWWGG	1 cut(s)	688
TaaI	ACNGT	1 cut(s)	440
TaiI	ACGT	1 cut(s)	522
TaqI	TCGA	7 cut(s)	387, 504, 513, 563, 572, 584, 623
TaqII	GACCGA	1 cut(s)	551
TasI	AATT	1 cut(s)	567
TfiI	GAWTC	4 cut(s)	400, 448, 620, 693
Tru1I	TTAA	2 cut(s)	152, 197
Tru9I	TTAA	2 cut(s)	152, 197
TseFI	GTSAC	2 cut(s)	434, 440
TseI	GCWGC	1 cut(s)	131
Tsp45I	GTSAC	2 cut(s)	434, 440
TspDTI	ATGAA	4 cut(s)	17, 91, 161, 342
Tth111I	GACNNNGTC	2 cut(s)	317, 538
XapI	RAATTY	1 cut(s)	567
XceI	RCATGY	1 cut(s)	11
XhoI	CTCGAG	1 cut(s)	562
XmnI	GAANNNNTTC	1 cut(s)	500
XspI	CTAG	1 cut(s)	140

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.