Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4C

Orthogroup ID

OG0009727

Physical Location & Seq

Genomic Coordinates Forward (+)

35825524 .. 35825988

Gene Structure 465 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4CG162900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 294 bp

ATGGGCAGCTATGTTTCCCACTTGCAAAAGCAGAGTTTCATAACCAACCTGCAAGCTTTGGATTGTGCTGCATCACTGGGAATGAAGTTAAGACAACCAAATATTACCAAAGATGTGTATAGCCTATGTCATTTAAGCCTCAAGGATTTCTCCCTTCAAGCATCCGGATATCTTTTGCCAAGCTTGCATTCGGATGCAATATTTGAAAGCTCAGGGGTCAGCTTCCTTTGTGATTTGAATGATAACATTCTATTGCCTGGAAATTCTTTTTATGCTTGGCTTGTTACATATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005623 GO:0005886 GO:0005911 GO:0009506 GO:0016020 GO:0030054 GO:0031224 GO:0031225 GO:0031226 GO:0044425 GO:0044459 GO:0044464 GO:0046658 GO:0055044 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

97

Amino Acids

10.74

Weight (kDa)

5.75

Isoelectric Point (pI)

58.82

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
At1g61900	PF26584	1 - 44	6.4e-21	At1g61900-like domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009727)

Species	Orthologous Gene IDs
malus_domestica	MD05G1345000.v1.1
rosa_chinensis	RchiOBHm_Chr5g0060961
rosa_laevigata	RLG00000028318 RLG00000032438
rosa_multiflora	Rmu_co8107644.1_g000001 Rmu_co8229399.1_g000001 Rmu_sc0000316.1_g000006 Rmu_sc0000640.1_g000014 Rmu_sc0007627.1_g000004 Rmu_sc0010917.1_g000006
rosa_roxburghii	Rroxscaffold_152G00434550 Rroxscaffold_2G00100700 Rroxscaffold_2G00103070 Rroxscaffold_5G00366020
rosa_samantha	Rh4CG162900 Rh5AG329700 Rh5AG398100 Rh5BG410900 Rh5CG436000 Rh5DG425300 Rh5DG425400 Rh6DG389100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	57
AccIII	TCCGGA	1 cut(s)	164
AcsI	RAATTY	1 cut(s)	262
AgsI	TTSAA	3 cut(s)	158, 206, 238
AjnI	CCWGG	1 cut(s)	256
AjuI	GAANNNNNNNTTGG	2 cut(s)	172, 204
AluBI	AGCT	5 cut(s)	9, 56, 183, 210, 222
AluI	AGCT	5 cut(s)	9, 56, 183, 210, 222
Aor13HI	TCCGGA	1 cut(s)	164
ApeKI	GCWGC	2 cut(s)	6, 68
ApoI	RAATTY	1 cut(s)	262
BbvI	GCAGC	2 cut(s)	18, 55
BciT130I	CCWGG	1 cut(s)	258
BfuAI	ACCTGC	1 cut(s)	57
BisI	GCNGC	2 cut(s)	7, 69
BlsI	GCNGC	2 cut(s)	8, 70
Bme1390I	CCNGG	1 cut(s)	258
BmrFI	CCNGG	1 cut(s)	258
BmrI	ACTGGG	1 cut(s)	86
BmsI	GCATC	3 cut(s)	80, 170, 184
BmuI	ACTGGG	1 cut(s)	86
Bpu10I	CCTNAGC	1 cut(s)	211
BpuEI	CTTGAG	1 cut(s)	125
BsaWI	WCCGGW	1 cut(s)	164
Bse1I	ACTGG	1 cut(s)	81
BseAI	TCCGGA	1 cut(s)	164
BseBI	CCWGG	1 cut(s)	258
BseGI	GGATG	2 cut(s)	161, 199
BseMII	CTCAG	1 cut(s)	225
BseNI	ACTGG	1 cut(s)	81
BseXI	GCAGC	2 cut(s)	18, 55
BsiSI	CCGG	1 cut(s)	165
BsmI	GAATGC	1 cut(s)	187
Bsp13I	TCCGGA	1 cut(s)	164
BspCNI	CTCAG	1 cut(s)	224
BspEI	TCCGGA	1 cut(s)	164
BspMI	ACCTGC	1 cut(s)	57
BsrI	ACTGG	1 cut(s)	81
Bst2UI	CCWGG	1 cut(s)	258
BstC8I	GCNNGC	2 cut(s)	54, 185
BstDEI	CTNAG	1 cut(s)	211
BstF5I	GGATG	2 cut(s)	161, 199
BstMWI	GCNNNNNNNGC	1 cut(s)	184
BstNI	CCWGG	1 cut(s)	258
BstSCI	CCNGG	1 cut(s)	256
BstV1I	GCAGC	2 cut(s)	18, 55
BtsCI	GGATG	2 cut(s)	161, 199
BtsIMutI	CAGTG	1 cut(s)	74
BveI	ACCTGC	1 cut(s)	57
Cac8I	GCNNGC	2 cut(s)	54, 185
CviJI	RGCY	8 cut(s)	9, 56, 123, 138, 183, 210, 222, 280
CviKI_1	RGCY	8 cut(s)	9, 56, 123, 138, 183, 210, 222, 280
DdeI	CTNAG	1 cut(s)	211
Eco32I	GATATC	1 cut(s)	170
EcoRII	CCWGG	1 cut(s)	256
EcoRV	GATATC	1 cut(s)	170
FaiI	YATR	6 cut(s)	12, 41, 120, 127, 273, 289
Fnu4HI	GCNGC	2 cut(s)	7, 69
FokI	GGATG	2 cut(s)	148, 206
Fsp4HI	GCNGC	2 cut(s)	7, 69
GluI	GCNGC	2 cut(s)	7, 69
HapII	CCGG	1 cut(s)	165
HindIII	AAGCTT	2 cut(s)	54, 181
HpaII	CCGG	1 cut(s)	165
Hpy188I	TCNGA	1 cut(s)	193
Hpy188III	TCNNGA	1 cut(s)	165
HpyAV	CCTTC	1 cut(s)	164
HpyCH4V	TGCA	5 cut(s)	25, 52, 71, 187, 197
HpyF10VI	GCNNNNNNNGC	1 cut(s)	184
HpyF3I	CTNAG	1 cut(s)	211
Kpn2I	TCCGGA	1 cut(s)	164
LpnPI	CCDG	6 cut(s)	62, 62, 178, 198, 243, 270
Lsp1109I	GCAGC	2 cut(s)	18, 55
LweI	GCATC	3 cut(s)	80, 170, 184
MaeIII	GTNAC	1 cut(s)	283
MluCI	AATT	1 cut(s)	262
MnlI	CCTC	1 cut(s)	149
MroI	TCCGGA	1 cut(s)	164
MseI	TTAA	2 cut(s)	89, 134
MslI	CAYNNNNRTG	1 cut(s)	192
MspI	CCGG	1 cut(s)	165
MspR9I	CCNGG	1 cut(s)	258
Mva1269I	GAATGC	1 cut(s)	187
MvaI	CCWGG	1 cut(s)	258
MwoI	GCNNNNNNNGC	1 cut(s)	184
PctI	GAATGC	1 cut(s)	187
PkrI	GCNGC	2 cut(s)	8, 70
Psp6I	CCWGG	1 cut(s)	256
PspGI	CCWGG	1 cut(s)	256
RseI	CAYNNNNRTG	1 cut(s)	192
SaqAI	TTAA	2 cut(s)	89, 134
SatI	GCNGC	2 cut(s)	7, 69
ScrFI	CCNGG	1 cut(s)	258
SetI	ASST	6 cut(s)	11, 51, 58, 185, 212, 224
SfaNI	GCATC	3 cut(s)	80, 170, 184
SmiMI	CAYNNNNRTG	1 cut(s)	192
SmlI	CTYRAG	1 cut(s)	140
SmoI	CTYRAG	1 cut(s)	140
Sse9I	AATT	1 cut(s)	262
SspI	AATATT	2 cut(s)	103, 201
StyD4I	CCNGG	1 cut(s)	256
TasI	AATT	1 cut(s)	262
Tru1I	TTAA	2 cut(s)	89, 134
Tru9I	TTAA	2 cut(s)	89, 134
TscAI	CASTG	1 cut(s)	81
TseI	GCWGC	2 cut(s)	6, 68
TspDTI	ATGAA	2 cut(s)	28, 98
TspRI	CASTG	1 cut(s)	81
XapI	RAATTY	1 cut(s)	262

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.