Rroxscaffold_5G00366020

GPI-anchored protein At1g61900-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
OG0009727
Physical Location & Seq
Forward (+)
47806563 .. 47809550
2988 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00366020.1

Sequence Viewer

Length: 513 bp
ATGTGTCAACATATGCAAATAGGTGCTTTCCGTGATTCTTTGGTGGGCTCAACTCTCCTCTCCATTTTGCCGCCACTAAAGGGCAACGAGATTGTTTCGTTGCTTCTGGAGAATGGAGCTGATGTAAATTCCATAATATTACTGTGGGCAGGCTGCAAATACAAGTTATTTCAAGTTCAAGGTAATTGTTCTATGGAGATAGATCTTGAACTGCTCTCATGTGAGAAGGTTTGTCCTTTGGTCTTCCCCAATATGAAACATGTTGCACTTGGCTTTGGGGAAGAGATAAGCAACCAAACAGCTTGCTGTACGGCAATGGACAACTATGTTTCCCACTTGCAAAAGCAGAGTTTCATATCCAACTTGCAAGCTTTGGATTCTGCTACATCACTGGGAATGAAGTTAAGAAAATCAAATATTACCAAAGATGTGTATAGCCTATGTCATTTAAGCCTCAAGGATTTCTCCCTTCAAGTTTTGGACGTGGATGGGTTGCCTGAAAGAGAATGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005623 GO:0005886 GO:0005911 GO:0009506 GO:0016020 GO:0030054 GO:0031224 GO:0031225 GO:0031226 GO:0044425 GO:0044459 GO:0044464 GO:0046658 GO:0055044 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

170

Amino Acids

18.74

Weight (kDa)

5.28

Isoelectric Point (pI)

39.38

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
At1g61900 PF26584 76 - 149 2.9e-33 At1g61900-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 71
AcsI RAATTY 1 cut(s) 127
AfaI GTAC 1 cut(s) 310
AfiI CCNNNNNNNGG 1 cut(s) 80
AflIII ACRYGT 1 cut(s) 259
AgsI TTSAA 4 cut(s) 173, 179, 209, 473
AjiI CACGTC 1 cut(s) 484
AluBI AGCT 3 cut(s) 119, 302, 371
AluI AGCT 3 cut(s) 119, 302, 371
ApeKI GCWGC 1 cut(s) 153
ApoI RAATTY 1 cut(s) 127
BanII GRGCYC 1 cut(s) 50
BbsI GAAGAC 1 cut(s) 235
BbvI GCAGC 1 cut(s) 140
BccI CCATC 1 cut(s) 482
BceAI ACGGC 1 cut(s) 327
BglII AGATCT 1 cut(s) 202
BisI GCNGC 2 cut(s) 71, 154
BlsI GCNGC 2 cut(s) 72, 155
BmgBI CACGTC 1 cut(s) 484
BmrI ACTGGG 1 cut(s) 401
BmuI ACTGGG 1 cut(s) 401
BpiI GAAGAC 1 cut(s) 235
BpmI CTGGAG 1 cut(s) 128
BpuEI CTTGAG 1 cut(s) 440
BsaXI ACNNNNNCTCC 2 cut(s) 108, 138
Bsc4I CCNNNNNNNGG 1 cut(s) 80
Bse1I ACTGG 1 cut(s) 396
Bse3DI GCAATG 1 cut(s) 321
BseGI GGATG 1 cut(s) 493
BseLI CCNNNNNNNGG 1 cut(s) 80
BseMI GCAATG 1 cut(s) 321
BseNI ACTGG 1 cut(s) 396
BseRI GAGGAG 1 cut(s) 47
BseXI GCAGC 1 cut(s) 140
BslI CCNNNNNNNGG 1 cut(s) 80
Bsp1286I GDGCHC 1 cut(s) 50
Bsp143I GATC 1 cut(s) 202
BspACI CCGC 1 cut(s) 71
BsrDI GCAATG 1 cut(s) 321
BsrI ACTGG 1 cut(s) 396
BssMI GATC 1 cut(s) 202
Bst4CI ACNGT 1 cut(s) 144
Bst6I CTCTTC 1 cut(s) 276
BstC8I GCNNGC 3 cut(s) 151, 304, 369
BstF5I GGATG 1 cut(s) 493
BstKTI GATC 1 cut(s) 205
BstMBI GATC 1 cut(s) 202
BstNSI RCATGY 1 cut(s) 263
BstV1I GCAGC 1 cut(s) 140
BstV2I GAAGAC 1 cut(s) 235
BstX2I RGATCY 1 cut(s) 202
BstYI RGATCY 1 cut(s) 202
BtrI CACGTC 1 cut(s) 484
BtsCI GGATG 1 cut(s) 493
BtsIMutI CAGTG 1 cut(s) 389
Cac8I GCNNGC 3 cut(s) 151, 304, 369
Csp6I GTAC 1 cut(s) 309
CviAII CATG 2 cut(s) 219, 260
CviJI RGCY 8 cut(s) 48, 119, 153, 273, 302, 371, 438, 453
CviKI_1 RGCY 8 cut(s) 48, 119, 153, 273, 302, 371, 438, 453
CviQI GTAC 1 cut(s) 309
DpnI GATC 1 cut(s) 204
DpnII GATC 1 cut(s) 202
Eam1104I CTCTTC 1 cut(s) 276
EarI CTCTTC 1 cut(s) 276
Eco24I GRGCYC 1 cut(s) 50
EcoT38I GRGCYC 1 cut(s) 50
FaeI CATG 2 cut(s) 222, 263
FatI CATG 2 cut(s) 218, 259
FauNDI CATATG 1 cut(s) 12
Fnu4HI GCNGC 2 cut(s) 71, 154
FokI GGATG 1 cut(s) 500
FriOI GRGCYC 1 cut(s) 50
Fsp4HI GCNGC 2 cut(s) 71, 154
GluI GCNGC 2 cut(s) 71, 154
GsuI CTGGAG 1 cut(s) 128
Hin1II CATG 2 cut(s) 222, 263
HincII GTYRAC 1 cut(s) 8
HindII GTYRAC 1 cut(s) 8
HindIII AAGCTT 1 cut(s) 369
HinfI GANTC 2 cut(s) 35, 377
Hpy166II GTNNAC 1 cut(s) 8
Hpy188III TCNNGA 2 cut(s) 107, 206
Hpy8I GTNNAC 1 cut(s) 8
HpyAV CCTTC 2 cut(s) 220, 479
HpyCH4III ACNGT 1 cut(s) 144
HpyCH4IV ACGT 1 cut(s) 483
HpyCH4V TGCA 5 cut(s) 16, 156, 266, 340, 367
HpySE526I ACGT 1 cut(s) 483
Hsp92II CATG 2 cut(s) 222, 263
Kzo9I GATC 1 cut(s) 202
LmnI GCTCC 1 cut(s) 116
LpnPI CCDG 3 cut(s) 92, 135, 377
Lsp1109I GCAGC 1 cut(s) 140
MaeII ACGT 1 cut(s) 483
MalI GATC 1 cut(s) 204
MboI GATC 1 cut(s) 202
MboII GAAGA 2 cut(s) 235, 293
MflI RGATCY 1 cut(s) 202
MhlI GDGCHC 1 cut(s) 50
MluCI AATT 2 cut(s) 127, 184
MmeI TCCRAC 1 cut(s) 384
MnlI CCTC 2 cut(s) 68, 464
MseI TTAA 2 cut(s) 404, 449
NdeI CATATG 1 cut(s) 12
NdeII GATC 1 cut(s) 202
NlaIII CATG 2 cut(s) 222, 263
NspI RCATGY 1 cut(s) 263
PciI ACATGT 1 cut(s) 259
PfeI GAWTC 2 cut(s) 35, 377
PkrI GCNGC 2 cut(s) 72, 155
PscI ACATGT 1 cut(s) 259
PsuI RGATCY 1 cut(s) 202
RsaI GTAC 1 cut(s) 310
RsaNI GTAC 1 cut(s) 309
SaqAI TTAA 2 cut(s) 404, 449
SatI GCNGC 2 cut(s) 71, 154
Sau3AI GATC 1 cut(s) 202
SduI GDGCHC 1 cut(s) 50
SetI ASST 7 cut(s) 25, 121, 184, 231, 304, 373, 486
SmlI CTYRAG 1 cut(s) 455
SmoI CTYRAG 1 cut(s) 455
Sse9I AATT 2 cut(s) 127, 184
SsiI CCGC 1 cut(s) 71
SspI AATATT 2 cut(s) 138, 418
TaaI ACNGT 1 cut(s) 144
TaiI ACGT 1 cut(s) 486
TasI AATT 2 cut(s) 127, 184
TauI GCSGC 1 cut(s) 73
TfiI GAWTC 2 cut(s) 35, 377
Tru1I TTAA 2 cut(s) 404, 449
Tru9I TTAA 2 cut(s) 404, 449
TscAI CASTG 1 cut(s) 396
TseI GCWGC 1 cut(s) 153
TspDTI ATGAA 3 cut(s) 269, 343, 413
TspGWI ACGGA 1 cut(s) 20
TspRI CASTG 1 cut(s) 396
XapI RAATTY 1 cut(s) 127
XceI RCATGY 1 cut(s) 263
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.