Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000152

Orthogroup ID

OG0009727

Physical Location & Seq

Genomic Coordinates Reverse (-)

78323 .. 82751

Gene Structure 4429 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_152G00434550.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 483 bp

ATGCGGAATCTTAGGGAGTTAGAGATTAGATCCTGCAGGAGCTTGACATCTACTTCTGGATTAACACGTTTGAAGATCCTACAGAAGTTGAAGTTAACTAATATGCCTAAGAATACACAGGCCATGTGGAATATGACTTTGCAGAAGCTGTGTTACGGTCTGCTGGCAAAGCTATTCACTCCTTCATTTGCGACCAATTCTCCGTCGTTGGCCGGGTTCGATGGCCTAAAGATTCATCACACCGATCTAAGCCACCTCTTCATCGGTGACGGTGACCGGACTCGTGAAGTTCCGGTCGAATCACTACTCGTCCTCAACCGCGACCAGAAAATTTTTGATGCCTTTGAGAACGCAGGGAGCGCCGATAACCGAGTCCGATATCGCCTATTCGAACCTTCTCGGGCCACCAAATCTCAATCCGAACTTCAAATGCTCGAGAAGAAAATTGGTTTCCATGGATTCCGAATCGGCTTTGAAGATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005102 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0006621 GO:0008104 GO:0008150 GO:0009889 GO:0009987 GO:0010556 GO:0010869 GO:0010941 GO:0012505 GO:0019222 GO:0031323 GO:0032507 GO:0033036 GO:0033365 GO:0034613 GO:0035437 GO:0042981 GO:0043067 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0045185 GO:0048471 GO:0050789 GO:0050794 GO:0051179 GO:0051235 GO:0051641 GO:0051651 GO:0060255 GO:0065007 GO:0065008 GO:0070727 GO:0070972 GO:0072595 GO:2000209

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Ank_2 Ank_4 GPCR_chapero_1

Protein Analysis

160

Amino Acids

18.28

Weight (kDa)

9.69

Isoelectric Point (pI)

38.98

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ANKRD13_C	PF11904	69 - 124	5.2e-08	ANKRD13 C-terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0009727)

Species	Orthologous Gene IDs
malus_domestica	MD05G1345000.v1.1
rosa_chinensis	RchiOBHm_Chr5g0060961
rosa_laevigata	RLG00000028318 RLG00000032438
rosa_multiflora	Rmu_co8107644.1_g000001 Rmu_co8229399.1_g000001 Rmu_sc0000316.1_g000006 Rmu_sc0000640.1_g000014 Rmu_sc0007627.1_g000004 Rmu_sc0010917.1_g000006
rosa_roxburghii	Rroxscaffold_152G00434550 Rroxscaffold_2G00100700 Rroxscaffold_2G00103070 Rroxscaffold_5G00366020
rosa_samantha	Rh4CG162900 Rh5AG329700 Rh5AG398100 Rh5BG410900 Rh5CG436000 Rh5DG425300 Rh5DG425400 Rh6DG389100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	321
AciI	CCGC	2 cut(s)	4, 319
AclWI	GGATC	2 cut(s)	24, 70
AcoI	YGGCCR	1 cut(s)	210
AcsI	RAATTY	1 cut(s)	330
AflIII	ACRYGT	1 cut(s)	65
AgsI	TTSAA	4 cut(s)	73, 91, 428, 476
AluBI	AGCT	3 cut(s)	42, 148, 172
AluI	AGCT	3 cut(s)	42, 148, 172
AlwI	GGATC	2 cut(s)	24, 70
AlwNI	CAGNNNCTG	1 cut(s)	148
Ama87I	CYCGRG	2 cut(s)	399, 434
AoxI	GGCC	4 cut(s)	120, 210, 223, 402
ApoI	RAATTY	1 cut(s)	330
AspLEI	GCGC	1 cut(s)	362
AspS9I	GGNCC	1 cut(s)	402
AsuC2I	CCSGG	1 cut(s)	214
AsuHPI	GGTGA	2 cut(s)	278, 284
AsuII	TTCGAA	1 cut(s)	390
AvaI	CYCGRG	2 cut(s)	399, 434
BarI	GAAGNNNNNNTAC	2 cut(s)	137, 169
BauI	CACGAG	1 cut(s)	282
BccI	CCATC	1 cut(s)	215
BcnI	CCSGG	1 cut(s)	214
BfmI	CTRYAG	2 cut(s)	34, 80
BfoI	RGCGCY	1 cut(s)	363
Bme1390I	CCNGG	1 cut(s)	214
BmeT110I	CYCGRG	2 cut(s)	399, 434
BmgT120I	GGNCC	1 cut(s)	402
BmrFI	CCNGG	1 cut(s)	214
BmsI	GCATC	1 cut(s)	328
Bpu14I	TTCGAA	1 cut(s)	390
BpuMI	CCSGG	1 cut(s)	214
BsaJI	CCNNGG	1 cut(s)	454
BsaWI	WCCGGW	2 cut(s)	276, 292
BsaXI	ACNNNNNCTCC	2 cut(s)	184, 214
BseDI	CCNNGG	1 cut(s)	454
Bsh1236I	CGCG	1 cut(s)	321
Bsh1285I	CGRYCG	1 cut(s)	297
BshFI	GGCC	4 cut(s)	122, 212, 225, 404
BsiEI	CGRYCG	1 cut(s)	297
BsiHKCI	CYCGRG	2 cut(s)	399, 434
BsiSI	CCGG	3 cut(s)	213, 277, 293
BsnI	GGCC	4 cut(s)	122, 212, 225, 404
BsoBI	CYCGRG	2 cut(s)	399, 434
Bsp119I	TTCGAA	1 cut(s)	390
Bsp143I	GATC	3 cut(s)	29, 75, 244
Bsp19I	CCATGG	1 cut(s)	454
BspACI	CCGC	2 cut(s)	4, 319
BspANI	GGCC	4 cut(s)	122, 212, 225, 404
BspFNI	CGCG	1 cut(s)	321
BspMAI	CTGCAG	1 cut(s)	38
BspPI	GGATC	2 cut(s)	24, 70
BspT104I	TTCGAA	1 cut(s)	390
BssECI	CCNNGG	1 cut(s)	454
BssMI	GATC	3 cut(s)	29, 75, 244
BssSI	CACGAG	1 cut(s)	282
BssT1I	CCWWGG	1 cut(s)	454
Bst2BI	CACGAG	1 cut(s)	282
Bst4CI	ACNGT	2 cut(s)	158, 272
Bst6I	CTCTTC	1 cut(s)	263
BstBI	TTCGAA	1 cut(s)	390
BstC8I	GCNNGC	1 cut(s)	165
BstDEI	CTNAG	3 cut(s)	11, 108, 248
BstDSI	CCRYGG	1 cut(s)	454
BstEII	GGTNACC	1 cut(s)	272
BstFNI	CGCG	1 cut(s)	321
BstH2I	RGCGCY	1 cut(s)	363
BstHHI	GCGC	1 cut(s)	362
BstKTI	GATC	3 cut(s)	32, 78, 247
BstMBI	GATC	3 cut(s)	29, 75, 244
BstMCI	CGRYCG	1 cut(s)	297
BstMWI	GCNNNNNNNGC	2 cut(s)	169, 359
BstPI	GGTNACC	1 cut(s)	272
BstSCI	CCNGG	1 cut(s)	212
BstSFI	CTRYAG	2 cut(s)	34, 80
BstUI	CGCG	1 cut(s)	321
BstX2I	RGATCY	2 cut(s)	29, 75
BstYI	RGATCY	2 cut(s)	29, 75
BsuRI	GGCC	4 cut(s)	122, 212, 225, 404
BtgI	CCRYGG	1 cut(s)	454
Cac8I	GCNNGC	1 cut(s)	165
CaiI	CAGNNNCTG	1 cut(s)	148
CfoI	GCGC	1 cut(s)	362
Cfr13I	GGNCC	1 cut(s)	402
CviAII	CATG	2 cut(s)	124, 455
CviJI	RGCY	9 cut(s)	42, 122, 148, 172, 212, 225, 252, 404, 471
CviKI_1	RGCY	9 cut(s)	42, 122, 148, 172, 212, 225, 252, 404, 471
DdeI	CTNAG	3 cut(s)	11, 108, 248
DpnI	GATC	3 cut(s)	31, 77, 246
DpnII	GATC	3 cut(s)	29, 75, 244
EaeI	YGGCCR	1 cut(s)	210
Eam1104I	CTCTTC	1 cut(s)	263
EarI	CTCTTC	1 cut(s)	263
Eco130I	CCWWGG	1 cut(s)	454
Eco32I	GATATC	1 cut(s)	380
Eco88I	CYCGRG	2 cut(s)	399, 434
Eco91I	GGTNACC	1 cut(s)	272
EcoO65I	GGTNACC	1 cut(s)	272
EcoRV	GATATC	1 cut(s)	380
EcoT14I	CCWWGG	1 cut(s)	454
ErhI	CCWWGG	1 cut(s)	454
FaeI	CATG	2 cut(s)	127, 458
FaiI	YATR	4 cut(s)	104, 125, 134, 456
FatI	CATG	2 cut(s)	123, 454
GlaI	GCGC	1 cut(s)	361
HaeII	RGCGCY	1 cut(s)	363
HaeIII	GGCC	4 cut(s)	122, 212, 225, 404
HapII	CCGG	3 cut(s)	213, 277, 293
HhaI	GCGC	1 cut(s)	362
Hin1II	CATG	2 cut(s)	127, 458
Hin6I	GCGC	1 cut(s)	360
HinP1I	GCGC	1 cut(s)	360
HincII	GTYRAC	1 cut(s)	96
HindII	GTYRAC	1 cut(s)	96
HinfI	GANTC	7 cut(s)	7, 232, 280, 299, 372, 459, 465
HpaI	GTTAAC	1 cut(s)	96
HpaII	CCGG	3 cut(s)	213, 277, 293
HphI	GGTGA	2 cut(s)	278, 284
Hpy166II	GTNNAC	1 cut(s)	96
Hpy188I	TCNGA	3 cut(s)	377, 421, 464
Hpy188III	TCNNGA	3 cut(s)	57, 284, 436
Hpy8I	GTNNAC	1 cut(s)	96
Hpy99I	CGWCG	1 cut(s)	208
HpyAV	CCTTC	2 cut(s)	192, 405
HpyCH4III	ACNGT	2 cut(s)	158, 272
HpyCH4IV	ACGT	1 cut(s)	67
HpyCH4V	TGCA	2 cut(s)	36, 142
HpyF10VI	GCNNNNNNNGC	2 cut(s)	169, 359
HpyF3I	CTNAG	3 cut(s)	11, 108, 248
HpySE526I	ACGT	1 cut(s)	67
Hsp92II	CATG	2 cut(s)	127, 458
HspAI	GCGC	1 cut(s)	360
KspAI	GTTAAC	1 cut(s)	96
Kzo9I	GATC	3 cut(s)	29, 75, 244
LmnI	GCTCC	2 cut(s)	39, 357
LweI	GCATC	1 cut(s)	328
MaeII	ACGT	1 cut(s)	67
MaeIII	GTNAC	3 cut(s)	152, 266, 272
MalI	GATC	3 cut(s)	31, 77, 246
MboI	GATC	3 cut(s)	29, 75, 244
MboII	GAAGA	3 cut(s)	85, 250, 451
MflI	RGATCY	2 cut(s)	29, 75
MluCI	AATT	3 cut(s)	196, 330, 444
MlyI	GAGTC	2 cut(s)	274, 381
MnlI	CCTC	2 cut(s)	266, 323
MseI	TTAA	2 cut(s)	62, 95
MspI	CCGG	3 cut(s)	213, 277, 293
MspR9I	CCNGG	1 cut(s)	214
MvnI	CGCG	1 cut(s)	321
MwoI	GCNNNNNNNGC	2 cut(s)	169, 359
NciI	CCSGG	1 cut(s)	214
NcoI	CCATGG	1 cut(s)	454
NdeII	GATC	3 cut(s)	29, 75, 244
NlaIII	CATG	2 cut(s)	127, 458
NmuCI	GTSAC	2 cut(s)	266, 272
NspV	TTCGAA	1 cut(s)	390
PaeR7I	CTCGAG	1 cut(s)	434
PfeI	GAWTC	5 cut(s)	7, 232, 299, 459, 465
PleI	GAGTC	2 cut(s)	274, 380
PpsI	GAGTC	2 cut(s)	274, 380
PspEI	GGTNACC	1 cut(s)	272
PspPI	GGNCC	1 cut(s)	402
PstI	CTGCAG	1 cut(s)	38
PstNI	CAGNNNCTG	1 cut(s)	148
PsuI	RGATCY	2 cut(s)	29, 75
SaqAI	TTAA	2 cut(s)	62, 95
Sau3AI	GATC	3 cut(s)	29, 75, 244
Sau96I	GGNCC	1 cut(s)	402
SbfI	CCTGCAGG	1 cut(s)	38
SchI	GAGTC	2 cut(s)	274, 381
ScrFI	CCNGG	1 cut(s)	214
SdaI	CCTGCAGG	1 cut(s)	38
SetI	ASST	6 cut(s)	44, 70, 150, 174, 258, 397
SfaNI	GCATC	1 cut(s)	328
SfcI	CTRYAG	2 cut(s)	34, 80
Sfr274I	CTCGAG	1 cut(s)	434
SfuI	TTCGAA	1 cut(s)	390
SlaI	CTCGAG	1 cut(s)	434
SmlI	CTYRAG	1 cut(s)	434
SmoI	CTYRAG	1 cut(s)	434
Sse8387I	CCTGCAGG	1 cut(s)	38
Sse9I	AATT	3 cut(s)	196, 330, 444
SsiI	CCGC	2 cut(s)	4, 319
StyD4I	CCNGG	1 cut(s)	212
StyI	CCWWGG	1 cut(s)	454
TaaI	ACNGT	2 cut(s)	158, 272
TaiI	ACGT	1 cut(s)	70
TaqI	TCGA	4 cut(s)	219, 297, 390, 435
TasI	AATT	3 cut(s)	196, 330, 444
TfiI	GAWTC	5 cut(s)	7, 232, 299, 459, 465
Tru1I	TTAA	2 cut(s)	62, 95
Tru9I	TTAA	2 cut(s)	62, 95
TseFI	GTSAC	2 cut(s)	266, 272
Tsp45I	GTSAC	2 cut(s)	266, 272
TspDTI	ATGAA	3 cut(s)	174, 224, 250
TspGWI	ACGGA	1 cut(s)	192
XapI	RAATTY	1 cut(s)	330
XhoI	CTCGAG	1 cut(s)	434

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.