RLG00000032438

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0009727
Physical Location & Seq
Reverse (-)
15245956 .. 15246374
419 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000032438

Sequence Viewer

Length: 333 bp
ATGATCTTCCTCTTCCCCTCCTACCCGGCCGGATCCAACTCGTCAGAGATGCTCACCCTGGACCTCTCTAGCTTCTTCTTCCTTTGGTTCTCAAATGCGGCAACCCATTCCGATTTCAGCAGCCTCAACTCGCCGCTGGACCAGAGGACTGGATCCGGAGCGCCGATGACTGAGTTCGATATCGTCGAATTCTGCTCGAGAATTTCAATTGCAGTCTCGAACCCGAGTTTTGCCCCAATGAGACATACCGCCGATTCGAACCTTCTCGGGCCATCAAATCTCAATCTGAACTTCAAATGCTTTGAGAAGAAGATTGGTTTCCATGGATTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

111

Amino Acids

12.16

Weight (kDa)

5.39

Isoelectric Point (pI)

33.08

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 155
AciI CCGC 3 cut(s) 98, 134, 249
AclWI GGATC 4 cut(s) 27, 40, 147, 160
AcoI YGGCCR 1 cut(s) 27
AcsI RAATTY 2 cut(s) 188, 201
AgsI TTSAA 2 cut(s) 207, 295
AjnI CCWGG 1 cut(s) 57
AluBI AGCT 1 cut(s) 72
AluI AGCT 1 cut(s) 72
Alw26I GTCTC 2 cut(s) 220, 235
AlwI GGATC 4 cut(s) 27, 40, 147, 160
Ama87I CYCGRG 3 cut(s) 196, 223, 266
Aor13HI TCCGGA 1 cut(s) 155
AoxI GGCC 2 cut(s) 27, 269
ApeKI GCWGC 1 cut(s) 120
ApoI RAATTY 2 cut(s) 188, 201
AspLEI GCGC 1 cut(s) 163
AspS9I GGNCC 3 cut(s) 61, 139, 269
AsuC2I CCSGG 1 cut(s) 26
AsuHPI GGTGA 1 cut(s) 46
AsuII TTCGAA 1 cut(s) 257
AvaI CYCGRG 3 cut(s) 196, 223, 266
AvaII GGWCC 2 cut(s) 61, 139
BamHI GGATCC 2 cut(s) 32, 152
BbvI GCAGC 1 cut(s) 132
BccI CCATC 1 cut(s) 280
BciT130I CCWGG 1 cut(s) 59
BcnI CCSGG 1 cut(s) 26
BcoDI GTCTC 2 cut(s) 220, 235
BfaI CTAG 1 cut(s) 69
BfoI RGCGCY 1 cut(s) 164
BisI GCNGC 3 cut(s) 99, 121, 134
BlsI GCNGC 3 cut(s) 100, 122, 135
Bme1390I CCNGG 2 cut(s) 26, 59
Bme18I GGWCC 2 cut(s) 61, 139
BmeT110I CYCGRG 3 cut(s) 196, 223, 266
BmgT120I GGNCC 3 cut(s) 61, 139, 269
BmiI GGNNCC 2 cut(s) 34, 154
BmrFI CCNGG 2 cut(s) 26, 59
BmsI GCATC 1 cut(s) 39
Bpu14I TTCGAA 1 cut(s) 257
BpuMI CCSGG 1 cut(s) 26
BsaJI CCNNGG 2 cut(s) 57, 322
BsaWI WCCGGW 1 cut(s) 155
Bse1I ACTGG 1 cut(s) 154
BseAI TCCGGA 1 cut(s) 155
BseBI CCWGG 1 cut(s) 59
BseDI CCNNGG 2 cut(s) 57, 322
BseMII CTCAG 1 cut(s) 162
BseNI ACTGG 1 cut(s) 154
BseX3I CGGCCG 1 cut(s) 27
BseXI GCAGC 1 cut(s) 132
Bsh1285I CGRYCG 1 cut(s) 30
BshFI GGCC 2 cut(s) 29, 271
BsiEI CGRYCG 1 cut(s) 30
BsiHKCI CYCGRG 3 cut(s) 196, 223, 266
BsiSI CCGG 3 cut(s) 26, 30, 156
BsmAI GTCTC 2 cut(s) 220, 235
BsnI GGCC 2 cut(s) 29, 271
BsoBI CYCGRG 3 cut(s) 196, 223, 266
Bsp119I TTCGAA 1 cut(s) 257
Bsp13I TCCGGA 1 cut(s) 155
Bsp143I GATC 3 cut(s) 3, 32, 152
Bsp19I CCATGG 1 cut(s) 322
BspACI CCGC 3 cut(s) 98, 134, 249
BspANI GGCC 2 cut(s) 29, 271
BspCNI CTCAG 1 cut(s) 163
BspEI TCCGGA 1 cut(s) 155
BspLI GGNNCC 2 cut(s) 34, 154
BspPI GGATC 4 cut(s) 27, 40, 147, 160
BspT104I TTCGAA 1 cut(s) 257
BsrI ACTGG 1 cut(s) 154
BssECI CCNNGG 2 cut(s) 57, 322
BssMI GATC 3 cut(s) 3, 32, 152
BssT1I CCWWGG 1 cut(s) 322
Bst2UI CCWGG 1 cut(s) 59
Bst6I CTCTTC 1 cut(s) 17
BstBI TTCGAA 1 cut(s) 257
BstDEI CTNAG 1 cut(s) 171
BstDSI CCRYGG 1 cut(s) 322
BstH2I RGCGCY 1 cut(s) 164
BstHHI GCGC 1 cut(s) 163
BstKTI GATC 3 cut(s) 6, 35, 155
BstMAI GTCTC 2 cut(s) 220, 235
BstMBI GATC 3 cut(s) 3, 32, 152
BstMCI CGRYCG 1 cut(s) 30
BstNI CCWGG 1 cut(s) 59
BstSCI CCNGG 2 cut(s) 24, 57
BstV1I GCAGC 1 cut(s) 132
BstX2I RGATCY 2 cut(s) 32, 152
BstXI CCANNNNNNTGG 1 cut(s) 149
BstYI RGATCY 2 cut(s) 32, 152
BstZI CGGCCG 1 cut(s) 27
BsuRI GGCC 2 cut(s) 29, 271
BtgI CCRYGG 1 cut(s) 322
CfoI GCGC 1 cut(s) 163
Cfr13I GGNCC 3 cut(s) 61, 139, 269
CviAII CATG 1 cut(s) 323
CviJI RGCY 4 cut(s) 29, 72, 123, 271
CviKI_1 RGCY 4 cut(s) 29, 72, 123, 271
DdeI CTNAG 1 cut(s) 171
DpnI GATC 3 cut(s) 5, 34, 154
DpnII GATC 3 cut(s) 3, 32, 152
EaeI YGGCCR 1 cut(s) 27
EagI CGGCCG 1 cut(s) 27
Eam1104I CTCTTC 1 cut(s) 17
EarI CTCTTC 1 cut(s) 17
EclXI CGGCCG 1 cut(s) 27
Eco130I CCWWGG 1 cut(s) 322
Eco32I GATATC 1 cut(s) 181
Eco47I GGWCC 2 cut(s) 61, 139
Eco52I CGGCCG 1 cut(s) 27
Eco88I CYCGRG 3 cut(s) 196, 223, 266
EcoRI GAATTC 1 cut(s) 188
EcoRII CCWGG 1 cut(s) 57
EcoRV GATATC 1 cut(s) 181
EcoT14I CCWWGG 1 cut(s) 322
ErhI CCWWGG 1 cut(s) 322
FaeI CATG 1 cut(s) 326
FaiI YATR 2 cut(s) 246, 324
FatI CATG 1 cut(s) 322
Fnu4HI GCNGC 3 cut(s) 99, 121, 134
Fsp4HI GCNGC 3 cut(s) 99, 121, 134
FspBI CTAG 1 cut(s) 69
GlaI GCGC 1 cut(s) 162
GluI GCNGC 3 cut(s) 99, 121, 134
HaeII RGCGCY 1 cut(s) 164
HaeIII GGCC 2 cut(s) 29, 271
HapII CCGG 3 cut(s) 26, 30, 156
HhaI GCGC 1 cut(s) 163
Hin1II CATG 1 cut(s) 326
Hin6I GCGC 1 cut(s) 161
HinP1I GCGC 1 cut(s) 161
HinfI GANTC 2 cut(s) 254, 327
HpaII CCGG 3 cut(s) 26, 30, 156
HphI GGTGA 1 cut(s) 46
Hpy188I TCNGA 4 cut(s) 46, 112, 288, 332
Hpy188III TCNNGA 3 cut(s) 156, 198, 217
Hpy99I CGWCG 1 cut(s) 188
HpyAV CCTTC 1 cut(s) 272
HpyCH4V TGCA 1 cut(s) 212
HpyF3I CTNAG 1 cut(s) 171
Hsp92II CATG 1 cut(s) 326
HspAI GCGC 1 cut(s) 161
Kpn2I TCCGGA 1 cut(s) 155
Kzo9I GATC 3 cut(s) 3, 32, 152
LmnI GCTCC 1 cut(s) 158
LpnPI CCDG 8 cut(s) 39, 43, 44, 71, 122, 135, 155, 169
Lsp1109I GCAGC 1 cut(s) 132
LweI GCATC 1 cut(s) 39
MaeI CTAG 1 cut(s) 69
MalI GATC 3 cut(s) 5, 34, 154
MboI GATC 3 cut(s) 3, 32, 152
MboII GAAGA 5 cut(s) 4, 67, 70, 319, 322
MfeI CAATTG 1 cut(s) 207
MflI RGATCY 2 cut(s) 32, 152
MluCI AATT 3 cut(s) 188, 201, 207
MmeI TCCRAC 1 cut(s) 60
MnlI CCTC 5 cut(s) 20, 28, 74, 134, 138
MroI TCCGGA 1 cut(s) 155
MspA1I CMGCKG 1 cut(s) 136
MspI CCGG 3 cut(s) 26, 30, 156
MspR9I CCNGG 2 cut(s) 26, 59
MunI CAATTG 1 cut(s) 207
MvaI CCWGG 1 cut(s) 59
NciI CCSGG 1 cut(s) 26
NcoI CCATGG 1 cut(s) 322
NdeII GATC 3 cut(s) 3, 32, 152
NlaIII CATG 1 cut(s) 326
NlaIV GGNNCC 2 cut(s) 34, 154
NspV TTCGAA 1 cut(s) 257
PaeR7I CTCGAG 1 cut(s) 196
PcsI WCGNNNNNNNCGW 1 cut(s) 183
PfeI GAWTC 2 cut(s) 254, 327
PkrI GCNGC 3 cut(s) 100, 122, 135
Psp6I CCWGG 1 cut(s) 57
PspGI CCWGG 1 cut(s) 57
PspN4I GGNNCC 2 cut(s) 34, 154
PspPI GGNCC 3 cut(s) 61, 139, 269
PsuI RGATCY 2 cut(s) 32, 152
SatI GCNGC 3 cut(s) 99, 121, 134
Sau3AI GATC 3 cut(s) 3, 32, 152
Sau96I GGNCC 3 cut(s) 61, 139, 269
ScrFI CCNGG 2 cut(s) 26, 59
SetI ASST 3 cut(s) 66, 74, 264
SfaNI GCATC 1 cut(s) 39
Sfr274I CTCGAG 1 cut(s) 196
SfuI TTCGAA 1 cut(s) 257
SinI GGWCC 2 cut(s) 61, 139
SlaI CTCGAG 1 cut(s) 196
SmlI CTYRAG 1 cut(s) 196
SmoI CTYRAG 1 cut(s) 196
Sse9I AATT 3 cut(s) 188, 201, 207
SsiI CCGC 3 cut(s) 98, 134, 249
SspMI CTAG 1 cut(s) 69
StyD4I CCNGG 2 cut(s) 24, 57
StyI CCWWGG 1 cut(s) 322
TaqI TCGA 5 cut(s) 177, 186, 197, 218, 257
TasI AATT 3 cut(s) 188, 201, 207
TauI GCSGC 2 cut(s) 101, 136
TfiI GAWTC 2 cut(s) 254, 327
TseI GCWGC 1 cut(s) 120
VpaK11BI GGWCC 2 cut(s) 61, 139
XapI RAATTY 2 cut(s) 188, 201
XhoI CTCGAG 1 cut(s) 196
XspI CTAG 1 cut(s) 69
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.