Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000640.1

Orthogroup ID

OG0009727

Physical Location & Seq

Genomic Coordinates Reverse (-)

76266 .. 80519

Gene Structure 4254 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000640.1_g000014.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1236 bp

ctgctactgcactcgtcatcgcctattcctgctactgcactcgtcatcgcctattcctgctactgcactcgtcatcgcctattcctgctactgcactcgtcatcgcctattcctgctactgcactcgtcatcgcctattcctgctactgcactcgtcatcgcctattcctgctactgcactcgtcatcgcctattcctgctactgcactcgtcatcgcctattcctgctactgcactcgtcatcgcctattcctgctactgcactcgtcatcgcctattcctgctactgcactcgtcatcgcctattcctgctactgcactcgtcatcgcctattcctgctactgcactcgtcatcgcctattcctgctactgcactcgtcatcgcctattcctgctactgcactcgtcatcgcctattcctgctactgcactcgtcatcgcctattcctgctactgcactcgtcatgttctgctactgcactcgtcatcgtctattcctgctactgtactcgtccaatcctgctactgcactcatactcgtccagttgtgctactgcacttatactcgtgttgtccagttcaactactgcacttgtactcatatcgtcgctgtcgtcttcgtgaatggtgagcgcatcgtcgtcgccggcgcgattcagattagaataagaggcgaaggtcgattccggaatcaatttgagtgctactggagatttttttgcagtgctactgcttcggagattcaagctagatctgtcgccgtcgtcttcgtgaatggtgagctcatcgtcgccgccggcgcgattcagattggagtgccggcgaagagctccgatgacgcttccagcgacgaggtcaaagaaatcgtctctctctcctcccagccttcatctgcgaccaattctccgtcgttggctgggttcgatggcctgaagattcagtgcgcggatcaaagcctcctcttcgtcggtgacggcgaccagactcacgaagttcctgttggatcactactagtcttgaaccgcgaccggaaaatctttgatgccttcgagaaagcaggagcgccgatgaccgagtccgatatagccggattttgctcgagaatttcgattgcagtctcgaacgcgagctcggcctcaatgagacagaccgccgatttgaaccttctcgggccaccaaatctcaatctaaacttcaaatgctctgagaagaagattggtttccatggattctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005102 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0006621 GO:0008104 GO:0008150 GO:0009889 GO:0009987 GO:0010556 GO:0010869 GO:0010941 GO:0012505 GO:0019222 GO:0031323 GO:0032507 GO:0033036 GO:0033365 GO:0034613 GO:0035437 GO:0042981 GO:0043067 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0045185 GO:0048471 GO:0050789 GO:0050794 GO:0051179 GO:0051235 GO:0051641 GO:0051651 GO:0060255 GO:0065007 GO:0065008 GO:0070727 GO:0070972 GO:0072595 GO:2000209

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Ank_2 Ank_4 GPCR_chapero_1

Protein Analysis

411

Amino Acids

44.9

Weight (kDa)

8.77

Isoelectric Point (pI)

48.86

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009727)

Species	Orthologous Gene IDs
malus_domestica	MD05G1345000.v1.1
rosa_chinensis	RchiOBHm_Chr5g0060961
rosa_laevigata	RLG00000028318 RLG00000032438
rosa_multiflora	Rmu_co8107644.1_g000001 Rmu_co8229399.1_g000001 Rmu_sc0000316.1_g000006 Rmu_sc0000640.1_g000014 Rmu_sc0007627.1_g000004 Rmu_sc0010917.1_g000006
rosa_roxburghii	Rroxscaffold_152G00434550 Rroxscaffold_2G00100700 Rroxscaffold_2G00103070 Rroxscaffold_5G00366020
rosa_samantha	Rh4CG162900 Rh5AG329700 Rh5AG398100 Rh5BG410900 Rh5CG436000 Rh5DG425300 Rh5DG425400 Rh6DG389100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	5 cut(s)	653, 803, 947, 1026, 1127
AccIII	TCCGGA	1 cut(s)	687
AciI	CCGC	4 cut(s)	795, 947, 1024, 1152
AclWI	GGATC	2 cut(s)	957, 1012
AcsI	RAATTY	1 cut(s)	1104
AcuI	CTGAAG	1 cut(s)	953
AfaI	GTAC	2 cut(s)	509, 598
AgsI	TTSAA	5 cut(s)	583, 746, 1021, 1162, 1198
AhlI	ACTAGT	1 cut(s)	1012
AjuI	GAANNNNNNNTTGG	2 cut(s)	984, 1016
AluBI	AGCT	4 cut(s)	749, 784, 831, 1131
AluI	AGCT	4 cut(s)	749, 784, 831, 1131
Alw21I	GWGCWC	3 cut(s)	786, 833, 1133
Alw26I	GTCTC	3 cut(s)	874, 1123, 1138
AlwI	GGATC	2 cut(s)	957, 1012
Ama87I	CYCGRG	2 cut(s)	1099, 1169
Aor13HI	TCCGGA	1 cut(s)	687
AoxI	GGCC	3 cut(s)	928, 1134, 1172
ApoI	RAATTY	1 cut(s)	1104
ArsI	GACNNNNNNTTYG	4 cut(s)	852, 884, 1141, 1173
AspLEI	GCGC	5 cut(s)	636, 653, 803, 947, 1066
AspS9I	GGNCC	1 cut(s)	1172
AsuHPI	GGTGA	3 cut(s)	641, 791, 983
AvaI	CYCGRG	2 cut(s)	1099, 1169
BanII	GRGCYC	3 cut(s)	786, 833, 1133
BauI	CACGAG	1 cut(s)	567
BbsI	GAAGAC	2 cut(s)	610, 760
Bbv12I	GWGCWC	3 cut(s)	786, 833, 1133
BccI	CCATC	1 cut(s)	920
BceAI	ACGGC	2 cut(s)	746, 991
BcgI	CGANNNNNNTGC	2 cut(s)	625, 659
BcoDI	GTCTC	3 cut(s)	874, 1123, 1138
BcuI	ACTAGT	1 cut(s)	1012
BfaI	CTAG	2 cut(s)	750, 1013
BfoI	RGCGCY	1 cut(s)	1067
BglII	AGATCT	1 cut(s)	752
BisI	GCNGC	1 cut(s)	795
BlsI	GCNGC	1 cut(s)	796
BmeT110I	CYCGRG	2 cut(s)	1099, 1169
BmgT120I	GGNCC	1 cut(s)	1172
BmsI	GCATC	2 cut(s)	645, 1033
BpiI	GAAGAC	2 cut(s)	610, 760
BpmI	CTGGAG	1 cut(s)	730
BsaJI	CCNNGG	1 cut(s)	1225
BsaWI	WCCGGW	2 cut(s)	687, 1029
BsaXI	ACNNNNNCTCC	2 cut(s)	889, 919
Bse118I	RCCGGY	3 cut(s)	647, 797, 820
Bse1I	ACTGG	3 cut(s)	544, 577, 713
BseAI	TCCGGA	1 cut(s)	687
BseDI	CCNNGG	1 cut(s)	1225
BseMII	CTCAG	1 cut(s)	1197
BseNI	ACTGG	3 cut(s)	544, 577, 713
BseRI	GAGGAG	2 cut(s)	868, 950
BseYI	CCCAGC	2 cut(s)	882, 917
Bsh1236I	CGCG	5 cut(s)	653, 803, 947, 1026, 1127
Bsh1285I	CGRYCG	1 cut(s)	1030
BshFI	GGCC	3 cut(s)	930, 1136, 1174
BsiEI	CGRYCG	1 cut(s)	1030
BsiHKAI	GWGCWC	3 cut(s)	786, 833, 1133
BsiHKCI	CYCGRG	2 cut(s)	1099, 1169
BsiSI	CCGG	6 cut(s)	648, 688, 798, 821, 1030, 1089
BslFI	GGGAC	1 cut(s)	119
BsmAI	GTCTC	3 cut(s)	874, 1123, 1138
BsmBI	CGTCTC	1 cut(s)	874
BsnI	GGCC	3 cut(s)	930, 1136, 1174
BsoBI	CYCGRG	2 cut(s)	1099, 1169
Bsp1286I	GDGCHC	3 cut(s)	786, 833, 1133
Bsp13I	TCCGGA	1 cut(s)	687
Bsp143I	GATC	3 cut(s)	752, 949, 1004
Bsp19I	CCATGG	1 cut(s)	1225
BspACI	CCGC	4 cut(s)	795, 947, 1024, 1152
BspANI	GGCC	3 cut(s)	930, 1136, 1174
BspCNI	CTCAG	1 cut(s)	1198
BspEI	TCCGGA	1 cut(s)	687
BspFNI	CGCG	5 cut(s)	653, 803, 947, 1026, 1127
BspPI	GGATC	2 cut(s)	957, 1012
BspQI	GCTCTTC	1 cut(s)	821
BsrFI	RCCGGY	3 cut(s)	647, 797, 820
BsrI	ACTGG	3 cut(s)	544, 577, 713
BssAI	RCCGGY	3 cut(s)	647, 797, 820
BssECI	CCNNGG	1 cut(s)	1225
BssMI	GATC	3 cut(s)	752, 949, 1004
BssSI	CACGAG	1 cut(s)	567
BssT1I	CCWWGG	1 cut(s)	1225
Bst2BI	CACGAG	1 cut(s)	567
Bst4CI	ACNGT	1 cut(s)	507
Bst6I	CTCTTC	2 cut(s)	821, 968
BstC8I	GCNNGC	4 cut(s)	649, 799, 822, 1129
BstDEI	CTNAG	1 cut(s)	1206
BstDSI	CCRYGG	1 cut(s)	1225
BstFNI	CGCG	5 cut(s)	653, 803, 947, 1026, 1127
BstH2I	RGCGCY	1 cut(s)	1067
BstHHI	GCGC	5 cut(s)	636, 653, 803, 947, 1066
BstKTI	GATC	3 cut(s)	755, 952, 1007
BstMAI	GTCTC	3 cut(s)	874, 1123, 1138
BstMBI	GATC	3 cut(s)	752, 949, 1004
BstMCI	CGRYCG	1 cut(s)	1030
BstMWI	GCNNNNNNNGC	2 cut(s)	800, 1133
BstUI	CGCG	5 cut(s)	653, 803, 947, 1026, 1127
BstV2I	GAAGAC	2 cut(s)	610, 760
BstX2I	RGATCY	1 cut(s)	752
BstYI	RGATCY	1 cut(s)	752
BsuRI	GGCC	3 cut(s)	930, 1136, 1174
BtgI	CCRYGG	1 cut(s)	1225
BtsI	GCAGTG	1 cut(s)	730
BtsIMutI	CAGTG	2 cut(s)	730, 947
Cac8I	GCNNGC	4 cut(s)	649, 799, 822, 1129
CfoI	GCGC	5 cut(s)	636, 653, 803, 947, 1066
Cfr10I	RCCGGY	3 cut(s)	647, 797, 820
Cfr13I	GGNCC	1 cut(s)	1172
CseI	GACGC	1 cut(s)	848
Csp6I	GTAC	2 cut(s)	508, 597
CviAII	CATG	2 cut(s)	466, 1226
CviQI	GTAC	2 cut(s)	508, 597
DdeI	CTNAG	1 cut(s)	1206
DpnI	GATC	3 cut(s)	754, 951, 1006
DpnII	GATC	3 cut(s)	752, 949, 1004
Eam1104I	CTCTTC	2 cut(s)	821, 968
EarI	CTCTTC	2 cut(s)	821, 968
Ecl136II	GAGCTC	3 cut(s)	784, 831, 1131
Eco130I	CCWWGG	1 cut(s)	1225
Eco24I	GRGCYC	3 cut(s)	786, 833, 1133
Eco53kI	GAGCTC	3 cut(s)	784, 831, 1131
Eco57I	CTGAAG	1 cut(s)	953
Eco88I	CYCGRG	2 cut(s)	1099, 1169
EcoICRI	GAGCTC	3 cut(s)	784, 831, 1131
EcoT14I	CCWWGG	1 cut(s)	1225
EcoT38I	GRGCYC	3 cut(s)	786, 833, 1133
ErhI	CCWWGG	1 cut(s)	1225
Esp3I	CGTCTC	1 cut(s)	874
FaeI	CATG	2 cut(s)	469, 1229
FaiI	YATR	6 cut(s)	467, 536, 564, 603, 1085, 1227
FatI	CATG	2 cut(s)	465, 1225
Fnu4HI	GCNGC	1 cut(s)	795
FriOI	GRGCYC	3 cut(s)	786, 833, 1133
Fsp4HI	GCNGC	1 cut(s)	795
FspBI	CTAG	2 cut(s)	750, 1013
GlaI	GCGC	5 cut(s)	635, 652, 802, 946, 1065
GluI	GCNGC	1 cut(s)	795
GsaI	CCCAGC	2 cut(s)	886, 921
GsuI	CTGGAG	1 cut(s)	730
HaeII	RGCGCY	1 cut(s)	1067
HaeIII	GGCC	3 cut(s)	930, 1136, 1174
HapII	CCGG	6 cut(s)	648, 688, 798, 821, 1030, 1089
HgaI	GACGC	1 cut(s)	848
HhaI	GCGC	5 cut(s)	636, 653, 803, 947, 1066
Hin1II	CATG	2 cut(s)	469, 1229
Hin6I	GCGC	5 cut(s)	634, 651, 801, 945, 1064
HinP1I	GCGC	5 cut(s)	634, 651, 801, 945, 1064
HinfI	GANTC	9 cut(s)	655, 684, 691, 742, 805, 937, 985, 1076, 1230
HpaII	CCGG	6 cut(s)	648, 688, 798, 821, 1030, 1089
HphI	GGTGA	3 cut(s)	641, 791, 983
Hpy188I	TCNGA	7 cut(s)	660, 739, 810, 835, 1081, 1207, 1235
Hpy188III	TCNNGA	8 cut(s)	622, 688, 772, 989, 1018, 1051, 1101, 1120
Hpy99I	CGWCG	8 cut(s)	611, 644, 647, 767, 794, 854, 913, 971
HpyAV	CCTTC	4 cut(s)	671, 897, 1057, 1175
HpyCH4III	ACNGT	1 cut(s)	507
HpyF10VI	GCNNNNNNNGC	2 cut(s)	800, 1133
HpyF3I	CTNAG	1 cut(s)	1206
Hsp92II	CATG	2 cut(s)	469, 1229
HspAI	GCGC	5 cut(s)	634, 651, 801, 945, 1064
Kpn2I	TCCGGA	1 cut(s)	687
KroI	GCCGGC	3 cut(s)	647, 797, 820
KroNI	GCCGGC	3 cut(s)	649, 799, 822
Kzo9I	GATC	3 cut(s)	752, 949, 1004
LguI	GCTCTTC	1 cut(s)	821
LmnI	GCTCC	2 cut(s)	836, 1061
LweI	GCATC	2 cut(s)	645, 1033
MaeI	CTAG	2 cut(s)	750, 1013
MaeIII	GTNAC	1 cut(s)	971
MalI	GATC	3 cut(s)	754, 951, 1006
MboI	GATC	3 cut(s)	752, 949, 1004
MboII	GAAGA	7 cut(s)	610, 760, 838, 946, 955, 1222, 1225
MflI	RGATCY	1 cut(s)	752
MhlI	GDGCHC	3 cut(s)	786, 833, 1133
MluCI	AATT	3 cut(s)	695, 901, 1104
MlyI	GAGTC	2 cut(s)	979, 1085
MmeI	TCCRAC	1 cut(s)	982
MnlI	CCTC	6 cut(s)	665, 847, 889, 968, 971, 1147
MreI	CGCCGGCG	2 cut(s)	647, 797
MroI	TCCGGA	1 cut(s)	687
MroNI	GCCGGC	3 cut(s)	647, 797, 820
MspI	CCGG	6 cut(s)	648, 688, 798, 821, 1030, 1089
MvnI	CGCG	5 cut(s)	653, 803, 947, 1026, 1127
MwoI	GCNNNNNNNGC	2 cut(s)	800, 1133
NaeI	GCCGGC	3 cut(s)	649, 799, 822
NcoI	CCATGG	1 cut(s)	1225
NdeII	GATC	3 cut(s)	752, 949, 1004
NgoMIV	GCCGGC	3 cut(s)	647, 797, 820
NlaIII	CATG	2 cut(s)	469, 1229
NmeAIII	GCCGAG	1 cut(s)	1112
NmuCI	GTSAC	1 cut(s)	971
PaeR7I	CTCGAG	1 cut(s)	1099
PciSI	GCTCTTC	1 cut(s)	821
PcsI	WCGNNNNNNNCGW	4 cut(s)	612, 846, 975, 1106
PdiI	GCCGGC	3 cut(s)	649, 799, 822
PfeI	GAWTC	7 cut(s)	655, 684, 691, 742, 805, 937, 1230
PflFI	GACNNNGTC	2 cut(s)	854, 1075
PkrI	GCNGC	1 cut(s)	796
PleI	GAGTC	2 cut(s)	979, 1084
PpsI	GAGTC	2 cut(s)	979, 1084
Psp124BI	GAGCTC	3 cut(s)	786, 833, 1133
PspFI	CCCAGC	2 cut(s)	882, 917
PspPI	GGNCC	1 cut(s)	1172
PsuI	RGATCY	1 cut(s)	752
PsyI	GACNNNGTC	2 cut(s)	854, 1075
RsaI	GTAC	2 cut(s)	509, 598
RsaNI	GTAC	2 cut(s)	508, 597
SacI	GAGCTC	3 cut(s)	786, 833, 1133
SapI	GCTCTTC	1 cut(s)	821
SatI	GCNGC	1 cut(s)	795
Sau3AI	GATC	3 cut(s)	752, 949, 1004
Sau96I	GGNCC	1 cut(s)	1172
SchI	GAGTC	2 cut(s)	979, 1085
SduI	GDGCHC	3 cut(s)	786, 833, 1133
SetI	ASST	7 cut(s)	682, 751, 786, 833, 858, 1133, 1167
SfaNI	GCATC	2 cut(s)	645, 1033
Sfr274I	CTCGAG	1 cut(s)	1099
SgrAI	CRCCGGYG	2 cut(s)	647, 797
SlaI	CTCGAG	1 cut(s)	1099
SmlI	CTYRAG	1 cut(s)	1099
SmoI	CTYRAG	1 cut(s)	1099
SpeI	ACTAGT	1 cut(s)	1012
Sse9I	AATT	3 cut(s)	695, 901, 1104
SsiI	CCGC	4 cut(s)	795, 947, 1024, 1152
SspMI	CTAG	2 cut(s)	750, 1013
SstI	GAGCTC	3 cut(s)	786, 833, 1133
StyI	CCWWGG	1 cut(s)	1225
TaaI	ACNGT	1 cut(s)	507
TaqI	TCGA	6 cut(s)	682, 924, 1050, 1100, 1109, 1121
TaqII	GACCGA	1 cut(s)	1088
TasI	AATT	3 cut(s)	695, 901, 1104
TatI	WGTACW	2 cut(s)	507, 596
TauI	GCSGC	1 cut(s)	797
TfiI	GAWTC	7 cut(s)	655, 684, 691, 742, 805, 937, 1230
TscAI	CASTG	2 cut(s)	730, 947
TseFI	GTSAC	1 cut(s)	971
TspDTI	ATGAA	1 cut(s)	879
TspGWI	ACGGA	1 cut(s)	897
TspRI	CASTG	2 cut(s)	730, 947
Tth111I	GACNNNGTC	2 cut(s)	854, 1075
XapI	RAATTY	1 cut(s)	1104
XhoI	CTCGAG	1 cut(s)	1099
XspI	CTAG	2 cut(s)	750, 1013

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.