Rh5CG436000

GPI-anchored protein At1g61900-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5C
OG0009727
Physical Location & Seq
Forward (+)
60360562 .. 60364945
4384 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5CG436000.1

Sequence Viewer

Length: 309 bp
ATGAAACATGTTGCACTTGGCTATGGGGATGAGATAAGCAACCAAACAGCTTGCTGTACGGCAATGGACAACTATGTTTCCCACTTGCAAAAGCAGAGTTTCATAAGCAACTTGCAATCTTTGGATTGTGCTGCATCACTGGGAATGAAGTTAAGAAAATCAAATATTACCAAAGATGTGTATAGCCTATGTCATTTAAGCCTCAAGGATTTCTCCCTTCAAGCATCTGGATATCTTTTGCCAAGCTTGCATTCAGACGCAATATTTGAAGTTCTGGACGTGGACGGGTTGCCTGAAAGAGAATGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005623 GO:0005886 GO:0005911 GO:0009506 GO:0016020 GO:0030054 GO:0031224 GO:0031225 GO:0031226 GO:0044425 GO:0044459 GO:0044464 GO:0046658 GO:0055044 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

102

Amino Acids

11.24

Weight (kDa)

5.37

Isoelectric Point (pI)

53.03

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
At1g61900 PF26584 1 - 65 2.7e-28 At1g61900-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AfaI GTAC 1 cut(s) 58
AflIII ACRYGT 1 cut(s) 7
AgsI TTSAA 2 cut(s) 221, 269
AjiI CACGTC 1 cut(s) 280
AjuI GAANNNNNNNTTGG 2 cut(s) 235, 267
AluBI AGCT 2 cut(s) 50, 246
AluI AGCT 2 cut(s) 50, 246
ApeKI GCWGC 1 cut(s) 131
ArsI GACNNNNNNTTYG 2 cut(s) 248, 280
BbvI GCAGC 1 cut(s) 118
BceAI ACGGC 1 cut(s) 75
BisI GCNGC 1 cut(s) 132
BlsI GCNGC 1 cut(s) 133
BmgBI CACGTC 1 cut(s) 280
BmrI ACTGGG 1 cut(s) 149
BmsI GCATC 2 cut(s) 143, 233
BmuI ACTGGG 1 cut(s) 149
BpuEI CTTGAG 1 cut(s) 188
Bse1I ACTGG 1 cut(s) 144
Bse3DI GCAATG 1 cut(s) 69
BseGI GGATG 1 cut(s) 34
BseMI GCAATG 1 cut(s) 69
BseNI ACTGG 1 cut(s) 144
BseXI GCAGC 1 cut(s) 118
BsmI GAATGC 2 cut(s) 250, 308
BsrDI GCAATG 1 cut(s) 69
BsrI ACTGG 1 cut(s) 144
BstC8I GCNNGC 2 cut(s) 52, 248
BstF5I GGATG 1 cut(s) 34
BstMWI GCNNNNNNNGC 1 cut(s) 247
BstNSI RCATGY 1 cut(s) 11
BstV1I GCAGC 1 cut(s) 118
BtrI CACGTC 1 cut(s) 280
BtsCI GGATG 1 cut(s) 34
BtsIMutI CAGTG 1 cut(s) 137
Cac8I GCNNGC 2 cut(s) 52, 248
CseI GACGC 1 cut(s) 266
Csp6I GTAC 1 cut(s) 57
CviAII CATG 1 cut(s) 8
CviJI RGCY 5 cut(s) 21, 50, 186, 201, 246
CviKI_1 RGCY 5 cut(s) 21, 50, 186, 201, 246
CviQI GTAC 1 cut(s) 57
Eco32I GATATC 1 cut(s) 233
EcoRV GATATC 1 cut(s) 233
FaeI CATG 1 cut(s) 11
FaiI YATR 6 cut(s) 9, 24, 75, 104, 183, 190
FatI CATG 1 cut(s) 7
Fnu4HI GCNGC 1 cut(s) 132
FokI GGATG 1 cut(s) 41
Fsp4HI GCNGC 1 cut(s) 132
GluI GCNGC 1 cut(s) 132
HgaI GACGC 1 cut(s) 266
Hin1II CATG 1 cut(s) 11
HindIII AAGCTT 1 cut(s) 244
Hpy166II GTNNAC 1 cut(s) 283
Hpy188I TCNGA 1 cut(s) 256
Hpy188III TCNNGA 2 cut(s) 228, 275
Hpy8I GTNNAC 1 cut(s) 283
HpyAV CCTTC 1 cut(s) 227
HpyCH4IV ACGT 1 cut(s) 279
HpyCH4V TGCA 5 cut(s) 14, 88, 115, 134, 250
HpyF10VI GCNNNNNNNGC 1 cut(s) 247
HpySE526I ACGT 1 cut(s) 279
Hsp92II CATG 1 cut(s) 11
LpnPI CCDG 3 cut(s) 125, 213, 260
Lsp1109I GCAGC 1 cut(s) 118
LweI GCATC 2 cut(s) 143, 233
MaeII ACGT 1 cut(s) 279
MnlI CCTC 1 cut(s) 212
MseI TTAA 2 cut(s) 152, 197
Mva1269I GAATGC 2 cut(s) 250, 308
MwoI GCNNNNNNNGC 1 cut(s) 247
NlaIII CATG 1 cut(s) 11
NspI RCATGY 1 cut(s) 11
PciI ACATGT 1 cut(s) 7
PctI GAATGC 2 cut(s) 250, 308
PkrI GCNGC 1 cut(s) 133
PscI ACATGT 1 cut(s) 7
RsaI GTAC 1 cut(s) 58
RsaNI GTAC 1 cut(s) 57
SaqAI TTAA 2 cut(s) 152, 197
SatI GCNGC 1 cut(s) 132
SetI ASST 3 cut(s) 52, 248, 282
SfaNI GCATC 2 cut(s) 143, 233
SmlI CTYRAG 1 cut(s) 203
SmoI CTYRAG 1 cut(s) 203
SspI AATATT 2 cut(s) 166, 264
TaiI ACGT 1 cut(s) 282
Tru1I TTAA 2 cut(s) 152, 197
Tru9I TTAA 2 cut(s) 152, 197
TscAI CASTG 1 cut(s) 144
TseI GCWGC 1 cut(s) 131
TspDTI ATGAA 3 cut(s) 17, 91, 161
TspRI CASTG 1 cut(s) 144
XceI RCATGY 1 cut(s) 11
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.