Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0009727

Physical Location & Seq

Genomic Coordinates Forward (+)

25540038 .. 25543798

Gene Structure 3761 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00103070.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 261 bp

ATGAAACATGTTACACTTGGCTATGGGGATGAGATAAGCAACCAGACAGCTTGGTGTACGGCAATGGACAGCTATGTTTCCCACTTGCAAAAGCAGAGTTTCATAACCAGCTTGCAAGCTTTGGATTGTGCTGCATCACTGGGAATGAAGTTAAGAAAATCAAATATTACCAAAGATGTGTATAGCCTATGTCATTTAAGCCTCAAGGATTTCTCCCTTCAAGTTCTGGACGTGGACGGGTTGCCTGAAAGAGAATGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005623 GO:0005886 GO:0005911 GO:0009506 GO:0016020 GO:0030054 GO:0031224 GO:0031225 GO:0031226 GO:0044425 GO:0044459 GO:0044464 GO:0046658 GO:0055044 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

86

Amino Acids

9.6

Weight (kDa)

5.8

Isoelectric Point (pI)

47.7

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
At1g61900	PF26584	1 - 65	1.9e-27	At1g61900-like domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009727)

Species	Orthologous Gene IDs
malus_domestica	MD05G1345000.v1.1
rosa_chinensis	RchiOBHm_Chr5g0060961
rosa_laevigata	RLG00000028318 RLG00000032438
rosa_multiflora	Rmu_co8107644.1_g000001 Rmu_co8229399.1_g000001 Rmu_sc0000316.1_g000006 Rmu_sc0000640.1_g000014 Rmu_sc0007627.1_g000004 Rmu_sc0010917.1_g000006
rosa_roxburghii	Rroxscaffold_152G00434550 Rroxscaffold_2G00100700 Rroxscaffold_2G00103070 Rroxscaffold_5G00366020
rosa_samantha	Rh4CG162900 Rh5AG329700 Rh5AG398100 Rh5BG410900 Rh5CG436000 Rh5DG425300 Rh5DG425400 Rh6DG389100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AfaI	GTAC	1 cut(s)	58
AflIII	ACRYGT	1 cut(s)	7
AgsI	TTSAA	1 cut(s)	221
AjiI	CACGTC	1 cut(s)	232
AluBI	AGCT	4 cut(s)	50, 72, 111, 119
AluI	AGCT	4 cut(s)	50, 72, 111, 119
ApeKI	GCWGC	1 cut(s)	131
BbvI	GCAGC	1 cut(s)	118
BceAI	ACGGC	1 cut(s)	75
BisI	GCNGC	1 cut(s)	132
BlsI	GCNGC	1 cut(s)	133
BmgBI	CACGTC	1 cut(s)	232
BmrI	ACTGGG	1 cut(s)	149
BmsI	GCATC	1 cut(s)	143
BmuI	ACTGGG	1 cut(s)	149
BpuEI	CTTGAG	1 cut(s)	188
Bse1I	ACTGG	1 cut(s)	144
Bse3DI	GCAATG	1 cut(s)	69
BseGI	GGATG	1 cut(s)	34
BseMI	GCAATG	1 cut(s)	69
BseNI	ACTGG	1 cut(s)	144
BseXI	GCAGC	1 cut(s)	118
BsmI	GAATGC	1 cut(s)	260
BsrDI	GCAATG	1 cut(s)	69
BsrI	ACTGG	1 cut(s)	144
BstC8I	GCNNGC	2 cut(s)	113, 117
BstF5I	GGATG	1 cut(s)	34
BstNSI	RCATGY	1 cut(s)	11
BstV1I	GCAGC	1 cut(s)	118
BtrI	CACGTC	1 cut(s)	232
BtsCI	GGATG	1 cut(s)	34
BtsIMutI	CAGTG	1 cut(s)	137
Cac8I	GCNNGC	2 cut(s)	113, 117
Csp6I	GTAC	1 cut(s)	57
CviAII	CATG	1 cut(s)	8
CviJI	RGCY	7 cut(s)	21, 50, 72, 111, 119, 186, 201
CviKI_1	RGCY	7 cut(s)	21, 50, 72, 111, 119, 186, 201
CviQI	GTAC	1 cut(s)	57
FaeI	CATG	1 cut(s)	11
FaiI	YATR	6 cut(s)	9, 24, 75, 104, 183, 190
FatI	CATG	1 cut(s)	7
Fnu4HI	GCNGC	1 cut(s)	132
FokI	GGATG	1 cut(s)	41
Fsp4HI	GCNGC	1 cut(s)	132
GluI	GCNGC	1 cut(s)	132
Hin1II	CATG	1 cut(s)	11
HindIII	AAGCTT	1 cut(s)	117
Hpy166II	GTNNAC	2 cut(s)	57, 235
Hpy188III	TCNNGA	1 cut(s)	227
Hpy8I	GTNNAC	2 cut(s)	57, 235
HpyAV	CCTTC	1 cut(s)	227
HpyCH4IV	ACGT	1 cut(s)	231
HpyCH4V	TGCA	3 cut(s)	88, 115, 134
HpySE526I	ACGT	1 cut(s)	231
Hsp92II	CATG	1 cut(s)	11
LpnPI	CCDG	4 cut(s)	56, 121, 125, 212
Lsp1109I	GCAGC	1 cut(s)	118
LweI	GCATC	1 cut(s)	143
MaeII	ACGT	1 cut(s)	231
MaeIII	GTNAC	1 cut(s)	10
MnlI	CCTC	1 cut(s)	212
MseI	TTAA	2 cut(s)	152, 197
Mva1269I	GAATGC	1 cut(s)	260
NlaIII	CATG	1 cut(s)	11
NspI	RCATGY	1 cut(s)	11
PciI	ACATGT	1 cut(s)	7
PctI	GAATGC	1 cut(s)	260
PkrI	GCNGC	1 cut(s)	133
PscI	ACATGT	1 cut(s)	7
RsaI	GTAC	1 cut(s)	58
RsaNI	GTAC	1 cut(s)	57
SaqAI	TTAA	2 cut(s)	152, 197
SatI	GCNGC	1 cut(s)	132
SetI	ASST	5 cut(s)	52, 74, 113, 121, 234
SfaNI	GCATC	1 cut(s)	143
SmlI	CTYRAG	1 cut(s)	203
SmoI	CTYRAG	1 cut(s)	203
SspI	AATATT	1 cut(s)	166
TaiI	ACGT	1 cut(s)	234
Tru1I	TTAA	2 cut(s)	152, 197
Tru9I	TTAA	2 cut(s)	152, 197
TscAI	CASTG	1 cut(s)	144
TseI	GCWGC	1 cut(s)	131
TspDTI	ATGAA	3 cut(s)	17, 91, 161
TspRI	CASTG	1 cut(s)	144
XceI	RCATGY	1 cut(s)	11

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.