Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0007627.1

Orthogroup ID

OG0009727

Physical Location & Seq

Genomic Coordinates Reverse (-)

8916 .. 9675

Gene Structure 760 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0007627.1_g000004.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 420 bp

ctgaaccctacgccacctttccaatattcgcaccgccgcatcctcggcttctcctccgcacgttcttccagctcatcgcactatatgcttcctagaaagagacaagtgggcggagaggttgtagtagaagaaggggaaccagatttcgccaacgaatctccaatcaagaagctttgcaccgacgaatctaagggcagtgactgcaaaaacactggtaacagcaatatcagcagcagcaacagtagcagcagcgtcaagccgccgatcatggcattaggaaatgggaattcgggggatattgatgaggatctccacagccggcagcttgctgtgtacggccgtgagacgatgaggcggctctttgcctccaacattcttgtctctgggatgcaaggccttggtgccgagattggtatgtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04120 ko05012 map04120 map05012

Pfam Domains

Protein Families

E1_4HB E1_FCCH E1_UFD ThiF UBA_e1_thiolCys

Protein Analysis

139

Amino Acids

14.96

Weight (kDa)

7.02

Isoelectric Point (pI)

65.02

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009727)

Species	Orthologous Gene IDs
malus_domestica	MD05G1345000.v1.1
rosa_chinensis	RchiOBHm_Chr5g0060961
rosa_laevigata	RLG00000028318 RLG00000032438
rosa_multiflora	Rmu_co8107644.1_g000001 Rmu_co8229399.1_g000001 Rmu_sc0000316.1_g000006 Rmu_sc0000640.1_g000014 Rmu_sc0007627.1_g000004 Rmu_sc0010917.1_g000006
rosa_roxburghii	Rroxscaffold_152G00434550 Rroxscaffold_2G00100700 Rroxscaffold_2G00103070 Rroxscaffold_5G00366020
rosa_samantha	Rh4CG162900 Rh5AG329700 Rh5AG398100 Rh5BG410900 Rh5CG436000 Rh5DG425300 Rh5DG425400 Rh6DG389100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	401
AciI	CCGC	6 cut(s)	34, 37, 57, 111, 260, 355
AclWI	GGATC	1 cut(s)	315
AcoI	YGGCCR	1 cut(s)	337
AcsI	RAATTY	1 cut(s)	286
AfaI	GTAC	1 cut(s)	335
AluBI	AGCT	3 cut(s)	72, 172, 325
AluI	AGCT	3 cut(s)	72, 172, 325
Alw26I	GTCTC	3 cut(s)	94, 338, 385
AlwI	GGATC	1 cut(s)	315
AlwNI	CAGNNNCTG	1 cut(s)	201
AoxI	GGCC	2 cut(s)	337, 394
ApeKI	GCWGC	5 cut(s)	231, 234, 246, 249, 322
ApoI	RAATTY	1 cut(s)	286
BanI	GGYRCC	1 cut(s)	401
BbvI	GCAGC	5 cut(s)	243, 246, 258, 261, 334
BceAI	ACGGC	2 cut(s)	324, 352
BcoDI	GTCTC	3 cut(s)	94, 338, 385
BfaI	CTAG	1 cut(s)	93
BisI	GCNGC	8 cut(s)	37, 232, 235, 247, 250, 260, 323, 356
BlsI	GCNGC	8 cut(s)	38, 233, 236, 248, 251, 261, 324, 357
BmiI	GGNNCC	2 cut(s)	138, 403
BmsI	GCATC	2 cut(s)	48, 378
BsaBI	GATNNNNATC	1 cut(s)	306
BsaJI	CCNNGG	2 cut(s)	43, 397
BsaXI	ACNNNNNCTCC	2 cut(s)	105, 135
Bse118I	RCCGGY	1 cut(s)	318
Bse1I	ACTGG	1 cut(s)	217
Bse8I	GATNNNNATC	1 cut(s)	306
BseDI	CCNNGG	2 cut(s)	43, 397
BseGI	GGATG	2 cut(s)	39, 393
BseJI	GATNNNNATC	1 cut(s)	306
BseNI	ACTGG	1 cut(s)	217
BseRI	GAGGAG	1 cut(s)	43
BseX3I	CGGCCG	1 cut(s)	337
BseXI	GCAGC	5 cut(s)	243, 246, 258, 261, 334
Bsh1285I	CGRYCG	1 cut(s)	340
BshFI	GGCC	2 cut(s)	339, 396
BshNI	GGYRCC	1 cut(s)	401
BsiEI	CGRYCG	1 cut(s)	340
BsiSI	CCGG	1 cut(s)	319
BsmAI	GTCTC	3 cut(s)	94, 338, 385
BsmBI	CGTCTC	1 cut(s)	338
BsnI	GGCC	2 cut(s)	339, 396
Bsp143I	GATC	2 cut(s)	264, 307
BspACI	CCGC	6 cut(s)	34, 37, 57, 111, 260, 355
BspANI	GGCC	2 cut(s)	339, 396
BspLI	GGNNCC	2 cut(s)	138, 403
BspPI	GGATC	1 cut(s)	315
BspT107I	GGYRCC	1 cut(s)	401
BsrFI	RCCGGY	1 cut(s)	318
BsrI	ACTGG	1 cut(s)	217
BssAI	RCCGGY	1 cut(s)	318
BssECI	CCNNGG	2 cut(s)	43, 397
BssMI	GATC	2 cut(s)	264, 307
BssT1I	CCWWGG	1 cut(s)	397
Bst4CI	ACNGT	1 cut(s)	242
BstAPI	GCANNNNNTGC	2 cut(s)	85, 201
BstC8I	GCNNGC	2 cut(s)	320, 327
BstDEI	CTNAG	1 cut(s)	189
BstF5I	GGATG	2 cut(s)	39, 393
BstKTI	GATC	2 cut(s)	267, 310
BstMAI	GTCTC	3 cut(s)	94, 338, 385
BstMBI	GATC	2 cut(s)	264, 307
BstMCI	CGRYCG	1 cut(s)	340
BstMWI	GCNNNNNNNGC	5 cut(s)	45, 85, 201, 228, 243
BstV1I	GCAGC	5 cut(s)	243, 246, 258, 261, 334
BstX2I	RGATCY	1 cut(s)	307
BstYI	RGATCY	1 cut(s)	307
BstZI	CGGCCG	1 cut(s)	337
BsuRI	GGCC	2 cut(s)	339, 396
BtgZI	GCGATG	1 cut(s)	60
BtsCI	GGATG	2 cut(s)	39, 393
BtsI	GCAGTG	1 cut(s)	202
BtsIMutI	CAGTG	2 cut(s)	202, 210
Cac8I	GCNNGC	2 cut(s)	320, 327
CaiI	CAGNNNCTG	1 cut(s)	201
Cfr10I	RCCGGY	1 cut(s)	318
CseI	GACGC	1 cut(s)	241
Csp6I	GTAC	1 cut(s)	334
CviAII	CATG	1 cut(s)	268
CviJI	RGCY	9 cut(s)	48, 72, 172, 259, 318, 325, 339, 358, 396
CviKI_1	RGCY	9 cut(s)	48, 72, 172, 259, 318, 325, 339, 358, 396
CviQI	GTAC	1 cut(s)	334
DdeI	CTNAG	1 cut(s)	189
DpnI	GATC	2 cut(s)	266, 309
DpnII	GATC	2 cut(s)	264, 307
EaeI	YGGCCR	1 cut(s)	337
EagI	CGGCCG	1 cut(s)	337
EciI	GGCGGA	1 cut(s)	126
EclXI	CGGCCG	1 cut(s)	337
Eco130I	CCWWGG	1 cut(s)	397
Eco147I	AGGCCT	1 cut(s)	396
Eco52I	CGGCCG	1 cut(s)	337
EcoRI	GAATTC	1 cut(s)	286
EcoT14I	CCWWGG	1 cut(s)	397
ErhI	CCWWGG	1 cut(s)	397
Esp3I	CGTCTC	1 cut(s)	338
FaeI	CATG	1 cut(s)	271
FaiI	YATR	4 cut(s)	84, 86, 269, 416
FatI	CATG	1 cut(s)	267
Fnu4HI	GCNGC	8 cut(s)	37, 232, 235, 247, 250, 260, 323, 356
FokI	GGATG	2 cut(s)	26, 400
Fsp4HI	GCNGC	8 cut(s)	37, 232, 235, 247, 250, 260, 323, 356
FspBI	CTAG	1 cut(s)	93
GluI	GCNGC	8 cut(s)	37, 232, 235, 247, 250, 260, 323, 356
HaeIII	GGCC	2 cut(s)	339, 396
HapII	CCGG	1 cut(s)	319
HgaI	GACGC	1 cut(s)	241
Hin1II	CATG	1 cut(s)	271
HindIII	AAGCTT	1 cut(s)	170
HinfI	GANTC	2 cut(s)	155, 185
HpaII	CCGG	1 cut(s)	319
Hpy166II	GTNNAC	1 cut(s)	334
Hpy188III	TCNNGA	1 cut(s)	166
Hpy8I	GTNNAC	1 cut(s)	334
Hpy99I	CGWCG	1 cut(s)	185
HpyAV	CCTTC	1 cut(s)	125
HpyCH4III	ACNGT	1 cut(s)	242
HpyCH4IV	ACGT	1 cut(s)	61
HpyCH4V	TGCA	3 cut(s)	177, 204, 391
HpyF10VI	GCNNNNNNNGC	5 cut(s)	45, 85, 201, 228, 243
HpyF3I	CTNAG	1 cut(s)	189
HpySE526I	ACGT	1 cut(s)	61
Hsp92II	CATG	1 cut(s)	271
KroI	GCCGGC	1 cut(s)	318
KroNI	GCCGGC	1 cut(s)	320
Kzo9I	GATC	2 cut(s)	264, 307
LpnPI	CCDG	5 cut(s)	82, 153, 198, 332, 369
Lsp1109I	GCAGC	5 cut(s)	243, 246, 258, 261, 334
LweI	GCATC	2 cut(s)	48, 378
MaeI	CTAG	1 cut(s)	93
MaeII	ACGT	1 cut(s)	61
MaeIII	GTNAC	2 cut(s)	197, 215
MalI	GATC	2 cut(s)	266, 309
MboI	GATC	2 cut(s)	264, 307
MboII	GAAGA	2 cut(s)	57, 140
MflI	RGATCY	1 cut(s)	307
MluCI	AATT	1 cut(s)	286
MmeI	TCCRAC	1 cut(s)	393
MnlI	CCTC	6 cut(s)	53, 64, 109, 298, 345, 376
MroNI	GCCGGC	1 cut(s)	318
MspI	CCGG	1 cut(s)	319
MwoI	GCNNNNNNNGC	5 cut(s)	45, 85, 201, 228, 243
NaeI	GCCGGC	1 cut(s)	320
NdeII	GATC	2 cut(s)	264, 307
NgoMIV	GCCGGC	1 cut(s)	318
NlaIII	CATG	1 cut(s)	271
NlaIV	GGNNCC	2 cut(s)	138, 403
NmeAIII	GCCGAG	1 cut(s)	24
NmuCI	GTSAC	1 cut(s)	197
PceI	AGGCCT	1 cut(s)	396
PdiI	GCCGGC	1 cut(s)	320
PfeI	GAWTC	2 cut(s)	155, 185
PkrI	GCNGC	8 cut(s)	38, 233, 236, 248, 251, 261, 324, 357
PspN4I	GGNNCC	2 cut(s)	138, 403
PstNI	CAGNNNCTG	1 cut(s)	201
PsuI	RGATCY	1 cut(s)	307
RsaI	GTAC	1 cut(s)	335
RsaNI	GTAC	1 cut(s)	334
SatI	GCNGC	8 cut(s)	37, 232, 235, 247, 250, 260, 323, 356
Sau3AI	GATC	2 cut(s)	264, 307
SetI	ASST	6 cut(s)	19, 64, 74, 120, 174, 327
SfaNI	GCATC	2 cut(s)	48, 378
Sse9I	AATT	1 cut(s)	286
SseBI	AGGCCT	1 cut(s)	396
SsiI	CCGC	6 cut(s)	34, 37, 57, 111, 260, 355
SspI	AATATT	1 cut(s)	26
SspMI	CTAG	1 cut(s)	93
StuI	AGGCCT	1 cut(s)	396
StyI	CCWWGG	1 cut(s)	397
TaaI	ACNGT	1 cut(s)	242
TaiI	ACGT	1 cut(s)	64
TasI	AATT	1 cut(s)	286
TauI	GCSGC	3 cut(s)	39, 262, 358
TfiI	GAWTC	2 cut(s)	155, 185
TscAI	CASTG	2 cut(s)	202, 217
TseFI	GTSAC	1 cut(s)	197
TseI	GCWGC	5 cut(s)	231, 234, 246, 249, 322
Tsp45I	GTSAC	1 cut(s)	197
TspRI	CASTG	2 cut(s)	202, 217
XapI	RAATTY	1 cut(s)	286
XspI	CTAG	1 cut(s)	93

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.