Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0009727

Physical Location & Seq

Genomic Coordinates Forward (+)

22482151 .. 22483528

Gene Structure 1378 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00100700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 510 bp

ATGACGCTTCCGGCTAGGGGTGGATTCGGTAGAAAACCGACGACAAATTCCGTCAACCGGTGCCGACCGAAGTTGGTCGGTTTCCAAATCTGCAACCAAAACCGACCCGCGGTAATCGGTTACCGACATATCGGTATACCGAATTTCGGCTCAAATTCGGAGAATTTGCCGGATCTTGACATTAGGCTCCGCCACCAAGATAACACCGATCACGGTCTTGATCACACTTTCCTCCATCCGCAAGCCCTAATTGAAATTAGAAACATGGAGCTCTTCCTCCGCCACCTCTTCATCGGTGACGGTGACCGGACTCGTGAAGTTCCGGTCGAATCACTACTCGTCCTCAACCGCGACCAGAAAATTTTTGATGCCTTTGAGAACGCAGGAGCGCCGATAACCGAGTCGATATCGCCTATTCGAACCTTCTCGGGCCACCAAATCTCAATCGAACTTCAAATGCTCGAGAAGAAAATTGGTTTCCATGGATTCCGAATCGGCTTTGAAGATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005102 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0006621 GO:0008104 GO:0008150 GO:0009889 GO:0009987 GO:0010556 GO:0010869 GO:0010941 GO:0012505 GO:0019222 GO:0031323 GO:0032507 GO:0033036 GO:0033365 GO:0034613 GO:0035437 GO:0042981 GO:0043067 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0045185 GO:0048471 GO:0050789 GO:0050794 GO:0051179 GO:0051235 GO:0051641 GO:0051651 GO:0060255 GO:0065007 GO:0065008 GO:0070727 GO:0070972 GO:0072595 GO:2000209

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Ank_2 Ank_4 GPCR_chapero_1

Protein Analysis

169

Amino Acids

19.2

Weight (kDa)

7.1

Isoelectric Point (pI)

39.72

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009727)

Species	Orthologous Gene IDs
malus_domestica	MD05G1345000.v1.1
rosa_chinensis	RchiOBHm_Chr5g0060961
rosa_laevigata	RLG00000028318 RLG00000032438
rosa_multiflora	Rmu_co8107644.1_g000001 Rmu_co8229399.1_g000001 Rmu_sc0000316.1_g000006 Rmu_sc0000640.1_g000014 Rmu_sc0007627.1_g000004 Rmu_sc0010917.1_g000006
rosa_roxburghii	Rroxscaffold_152G00434550 Rroxscaffold_2G00100700 Rroxscaffold_2G00103070 Rroxscaffold_5G00366020
rosa_samantha	Rh4CG162900 Rh5AG329700 Rh5AG398100 Rh5BG410900 Rh5CG436000 Rh5DG425300 Rh5DG425400 Rh6DG389100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	60
AccI	GTMKAC	1 cut(s)	136
AccII	CGCG	2 cut(s)	110, 351
AciI	CCGC	6 cut(s)	108, 110, 190, 239, 280, 349
AclWI	GGATC	1 cut(s)	180
AcsI	RAATTY	5 cut(s)	46, 142, 154, 163, 360
AfiI	CCNNNNNNNGG	4 cut(s)	17, 57, 109, 146
AgeI	ACCGGT	1 cut(s)	57
AgsI	TTSAA	3 cut(s)	254, 455, 503
AluBI	AGCT	1 cut(s)	271
AluI	AGCT	1 cut(s)	271
Alw21I	GWGCWC	1 cut(s)	273
AlwI	GGATC	1 cut(s)	180
Ama87I	CYCGRG	2 cut(s)	427, 461
AoxI	GGCC	1 cut(s)	430
ApoI	RAATTY	5 cut(s)	46, 142, 154, 163, 360
AsiGI	ACCGGT	1 cut(s)	57
AspLEI	GCGC	1 cut(s)	391
AspS9I	GGNCC	1 cut(s)	430
AsuHPI	GGTGA	2 cut(s)	308, 314
AsuII	TTCGAA	1 cut(s)	418
AvaI	CYCGRG	2 cut(s)	427, 461
BanI	GGYRCC	1 cut(s)	60
BanII	GRGCYC	1 cut(s)	273
BauI	CACGAG	1 cut(s)	312
Bbv12I	GWGCWC	1 cut(s)	273
BccI	CCATC	1 cut(s)	243
BclI	TGATCA	1 cut(s)	220
BfaI	CTAG	1 cut(s)	15
BfoI	RGCGCY	1 cut(s)	392
BmeT110I	CYCGRG	2 cut(s)	427, 461
BmgT120I	GGNCC	1 cut(s)	430
BmiI	GGNNCC	2 cut(s)	62, 188
BmsI	GCATC	1 cut(s)	358
Bpu14I	TTCGAA	1 cut(s)	418
BsaJI	CCNNGG	2 cut(s)	108, 481
BsaWI	WCCGGW	3 cut(s)	57, 306, 322
Bsc4I	CCNNNNNNNGG	4 cut(s)	17, 57, 109, 146
Bse118I	RCCGGY	1 cut(s)	57
BseDI	CCNNGG	2 cut(s)	108, 481
BseGI	GGATG	1 cut(s)	235
BseLI	CCNNNNNNNGG	4 cut(s)	17, 57, 109, 146
Bsh1236I	CGCG	2 cut(s)	110, 351
Bsh1285I	CGRYCG	2 cut(s)	68, 327
BshFI	GGCC	1 cut(s)	432
BshNI	GGYRCC	1 cut(s)	60
BshTI	ACCGGT	1 cut(s)	57
BsiEI	CGRYCG	2 cut(s)	68, 327
BsiHKAI	GWGCWC	1 cut(s)	273
BsiHKCI	CYCGRG	2 cut(s)	427, 461
BsiSI	CCGG	5 cut(s)	11, 58, 170, 307, 323
BslI	CCNNNNNNNGG	4 cut(s)	17, 57, 109, 146
BsnI	GGCC	1 cut(s)	432
BsoBI	CYCGRG	2 cut(s)	427, 461
Bsp119I	TTCGAA	1 cut(s)	418
Bsp1286I	GDGCHC	1 cut(s)	273
Bsp143I	GATC	3 cut(s)	172, 208, 220
Bsp19I	CCATGG	1 cut(s)	481
BspACI	CCGC	6 cut(s)	108, 110, 190, 239, 280, 349
BspANI	GGCC	1 cut(s)	432
BspFNI	CGCG	2 cut(s)	110, 351
BspLI	GGNNCC	2 cut(s)	62, 188
BspPI	GGATC	1 cut(s)	180
BspQI	GCTCTTC	1 cut(s)	278
BspT104I	TTCGAA	1 cut(s)	418
BspT107I	GGYRCC	1 cut(s)	60
BsrFI	RCCGGY	1 cut(s)	57
BssAI	RCCGGY	1 cut(s)	57
BssECI	CCNNGG	2 cut(s)	108, 481
BssMI	GATC	3 cut(s)	172, 208, 220
BssNAI	GTATAC	1 cut(s)	137
BssSI	CACGAG	1 cut(s)	312
BssT1I	CCWWGG	1 cut(s)	481
Bst1107I	GTATAC	1 cut(s)	137
Bst2BI	CACGAG	1 cut(s)	312
Bst4CI	ACNGT	2 cut(s)	215, 302
Bst6I	CTCTTC	2 cut(s)	278, 293
BstBI	TTCGAA	1 cut(s)	418
BstC8I	GCNNGC	1 cut(s)	243
BstDSI	CCRYGG	2 cut(s)	108, 481
BstEII	GGTNACC	2 cut(s)	119, 302
BstF5I	GGATG	1 cut(s)	235
BstFNI	CGCG	2 cut(s)	110, 351
BstH2I	RGCGCY	1 cut(s)	392
BstHHI	GCGC	1 cut(s)	391
BstKTI	GATC	3 cut(s)	175, 211, 223
BstMBI	GATC	3 cut(s)	172, 208, 220
BstMCI	CGRYCG	2 cut(s)	68, 327
BstPI	GGTNACC	2 cut(s)	119, 302
BstUI	CGCG	2 cut(s)	110, 351
BstX2I	RGATCY	1 cut(s)	172
BstYI	RGATCY	1 cut(s)	172
BstZ17I	GTATAC	1 cut(s)	137
BsuRI	GGCC	1 cut(s)	432
BtgI	CCRYGG	2 cut(s)	108, 481
BtsCI	GGATG	1 cut(s)	235
Cac8I	GCNNGC	1 cut(s)	243
CfoI	GCGC	1 cut(s)	391
Cfr10I	RCCGGY	1 cut(s)	57
Cfr13I	GGNCC	1 cut(s)	430
Cfr42I	CCGCGG	1 cut(s)	111
CseI	GACGC	1 cut(s)	13
CspAI	ACCGGT	1 cut(s)	57
CviAII	CATG	2 cut(s)	265, 482
CviJI	RGCY	7 cut(s)	14, 150, 187, 245, 271, 432, 498
CviKI_1	RGCY	7 cut(s)	14, 150, 187, 245, 271, 432, 498
DpnI	GATC	3 cut(s)	174, 210, 222
DpnII	GATC	3 cut(s)	172, 208, 220
Eam1104I	CTCTTC	2 cut(s)	278, 293
EarI	CTCTTC	2 cut(s)	278, 293
EciI	GGCGGA	2 cut(s)	179, 269
Ecl136II	GAGCTC	1 cut(s)	271
Eco130I	CCWWGG	1 cut(s)	481
Eco24I	GRGCYC	1 cut(s)	273
Eco32I	GATATC	1 cut(s)	408
Eco53kI	GAGCTC	1 cut(s)	271
Eco88I	CYCGRG	2 cut(s)	427, 461
Eco91I	GGTNACC	2 cut(s)	119, 302
EcoICRI	GAGCTC	1 cut(s)	271
EcoO65I	GGTNACC	2 cut(s)	119, 302
EcoRV	GATATC	1 cut(s)	408
EcoT14I	CCWWGG	1 cut(s)	481
EcoT38I	GRGCYC	1 cut(s)	273
ErhI	CCWWGG	1 cut(s)	481
FaeI	CATG	2 cut(s)	268, 485
FaiI	YATR	4 cut(s)	129, 137, 266, 483
FatI	CATG	2 cut(s)	264, 481
FauI	CCCGC	1 cut(s)	115
FbaI	TGATCA	1 cut(s)	220
FblI	GTMKAC	1 cut(s)	136
FokI	GGATG	1 cut(s)	222
FriOI	GRGCYC	1 cut(s)	273
FspBI	CTAG	1 cut(s)	15
GlaI	GCGC	1 cut(s)	390
HaeII	RGCGCY	1 cut(s)	392
HaeIII	GGCC	1 cut(s)	432
HapII	CCGG	5 cut(s)	11, 58, 170, 307, 323
HgaI	GACGC	1 cut(s)	13
HhaI	GCGC	1 cut(s)	391
Hin1II	CATG	2 cut(s)	268, 485
Hin6I	GCGC	1 cut(s)	389
HinP1I	GCGC	1 cut(s)	389
HincII	GTYRAC	1 cut(s)	55
HindII	GTYRAC	1 cut(s)	55
HinfI	GANTC	6 cut(s)	24, 310, 329, 401, 486, 492
HpaII	CCGG	5 cut(s)	11, 58, 170, 307, 323
HphI	GGTGA	2 cut(s)	308, 314
Hpy166II	GTNNAC	2 cut(s)	55, 137
Hpy188I	TCNGA	2 cut(s)	160, 491
Hpy188III	TCNNGA	4 cut(s)	176, 218, 314, 463
Hpy8I	GTNNAC	2 cut(s)	55, 137
Hpy99I	CGWCG	1 cut(s)	43
HpyAV	CCTTC	1 cut(s)	433
HpyCH4III	ACNGT	2 cut(s)	215, 302
HpyCH4V	TGCA	1 cut(s)	93
Hsp92II	CATG	2 cut(s)	268, 485
HspAI	GCGC	1 cut(s)	389
Ksp22I	TGATCA	1 cut(s)	220
KspI	CCGCGG	1 cut(s)	111
Kzo9I	GATC	3 cut(s)	172, 208, 220
LguI	GCTCTTC	1 cut(s)	278
LmnI	GCTCC	3 cut(s)	192, 268, 386
LpnPI	CCDG	7 cut(s)	24, 71, 183, 320, 336, 368, 369
LweI	GCATC	1 cut(s)	358
MaeI	CTAG	1 cut(s)	15
MaeIII	GTNAC	3 cut(s)	119, 296, 302
MalI	GATC	3 cut(s)	174, 210, 222
MboI	GATC	3 cut(s)	172, 208, 220
MboII	GAAGA	3 cut(s)	265, 280, 478
MflI	RGATCY	1 cut(s)	172
MhlI	GDGCHC	1 cut(s)	273
MluCI	AATT	8 cut(s)	46, 142, 154, 163, 249, 255, 360, 471
MlyI	GAGTC	2 cut(s)	304, 410
MnlI	CCTC	4 cut(s)	242, 287, 296, 353
MspA1I	CMGCKG	1 cut(s)	110
MspI	CCGG	5 cut(s)	11, 58, 170, 307, 323
MvnI	CGCG	2 cut(s)	110, 351
NcoI	CCATGG	1 cut(s)	481
NdeII	GATC	3 cut(s)	172, 208, 220
NlaIII	CATG	2 cut(s)	268, 485
NlaIV	GGNNCC	2 cut(s)	62, 188
NmuCI	GTSAC	2 cut(s)	296, 302
NspV	TTCGAA	1 cut(s)	418
PaeR7I	CTCGAG	1 cut(s)	461
PciSI	GCTCTTC	1 cut(s)	278
PfeI	GAWTC	4 cut(s)	24, 329, 486, 492
PinAI	ACCGGT	1 cut(s)	57
PleI	GAGTC	2 cut(s)	304, 409
PpsI	GAGTC	2 cut(s)	304, 409
Psp124BI	GAGCTC	1 cut(s)	273
PspEI	GGTNACC	2 cut(s)	119, 302
PspN4I	GGNNCC	2 cut(s)	62, 188
PspPI	GGNCC	1 cut(s)	430
PsuI	RGATCY	1 cut(s)	172
SacI	GAGCTC	1 cut(s)	273
SacII	CCGCGG	1 cut(s)	111
SapI	GCTCTTC	1 cut(s)	278
Sau3AI	GATC	3 cut(s)	172, 208, 220
Sau96I	GGNCC	1 cut(s)	430
SchI	GAGTC	2 cut(s)	304, 410
SduI	GDGCHC	1 cut(s)	273
SetI	ASST	3 cut(s)	273, 288, 425
SfaNI	GCATC	1 cut(s)	358
Sfr274I	CTCGAG	1 cut(s)	461
Sfr303I	CCGCGG	1 cut(s)	111
SfuI	TTCGAA	1 cut(s)	418
SgrBI	CCGCGG	1 cut(s)	111
SlaI	CTCGAG	1 cut(s)	461
SmlI	CTYRAG	1 cut(s)	461
SmoI	CTYRAG	1 cut(s)	461
Sse9I	AATT	8 cut(s)	46, 142, 154, 163, 249, 255, 360, 471
SsiI	CCGC	6 cut(s)	108, 110, 190, 239, 280, 349
SspMI	CTAG	1 cut(s)	15
SstI	GAGCTC	1 cut(s)	273
StyI	CCWWGG	1 cut(s)	481
TaaI	ACNGT	2 cut(s)	215, 302
TaqI	TCGA	5 cut(s)	327, 404, 418, 447, 462
TaqII	GACCGA	1 cut(s)	82
TasI	AATT	8 cut(s)	46, 142, 154, 163, 249, 255, 360, 471
TfiI	GAWTC	4 cut(s)	24, 329, 486, 492
TseFI	GTSAC	2 cut(s)	296, 302
Tsp45I	GTSAC	2 cut(s)	296, 302
TspDTI	ATGAA	1 cut(s)	280
TspGWI	ACGGA	1 cut(s)	40
XapI	RAATTY	5 cut(s)	46, 142, 154, 163, 360
XhoI	CTCGAG	1 cut(s)	461
XmiI	GTMKAC	1 cut(s)	136
XspI	CTAG	1 cut(s)	15

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.