Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000316.1

Orthogroup ID

OG0009727

Physical Location & Seq

Genomic Coordinates Reverse (-)

50216 .. 50927

Gene Structure 712 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000316.1_g000006.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 297 bp

atgggtttaggaatcattcttccggaatcaataccgattcctttcttctcccatttcacttgtctccgattcatgattattttccattccaatttcgactccgacaatgactccgacgccaacatccgggcaatcaatgttgggtcgatgaggatctacaacaccagagatatcgatgaggatctgcacagccggcggcttaccgtctatggccagaagtcgatgaggagactcttcgattcgaatgttttgatattagggatactgggcctcggtgctgagattggtactgattaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04120 ko05012 map04120 map05012

Pfam Domains

Protein Families

E1_4HB E1_FCCH E1_UFD ThiF UBA_e1_thiolCys

Protein Analysis

98

Amino Acids

11.08

Weight (kDa)

5.46

Isoelectric Point (pI)

46.33

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009727)

Species	Orthologous Gene IDs
malus_domestica	MD05G1345000.v1.1
rosa_chinensis	RchiOBHm_Chr5g0060961
rosa_laevigata	RLG00000028318 RLG00000032438
rosa_multiflora	Rmu_co8107644.1_g000001 Rmu_co8229399.1_g000001 Rmu_sc0000316.1_g000006 Rmu_sc0000640.1_g000014 Rmu_sc0007627.1_g000004 Rmu_sc0010917.1_g000006
rosa_roxburghii	Rroxscaffold_152G00434550 Rroxscaffold_2G00100700 Rroxscaffold_2G00103070 Rroxscaffold_5G00366020
rosa_samantha	Rh4CG162900 Rh5AG329700 Rh5AG398100 Rh5BG410900 Rh5CG436000 Rh5DG425300 Rh5DG425400 Rh6DG389100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	22
AciI	CCGC	1 cut(s)	196
AclWI	GGATC	2 cut(s)	161, 189
AcoI	YGGCCR	1 cut(s)	211
AcyI	GRCGYC	1 cut(s)	117
AfaI	GTAC	1 cut(s)	289
AfiI	CCNNNNNNNGG	1 cut(s)	126
Alw26I	GTCTC	2 cut(s)	68, 223
AlwI	GGATC	2 cut(s)	161, 189
Aor13HI	TCCGGA	1 cut(s)	22
AoxI	GGCC	2 cut(s)	211, 268
AspS9I	GGNCC	1 cut(s)	268
AsuC2I	CCSGG	1 cut(s)	128
AsuII	TTCGAA	1 cut(s)	242
BalI	TGGCCA	1 cut(s)	213
BciVI	GTATCC	1 cut(s)	255
BcnI	CCSGG	1 cut(s)	128
BcoDI	GTCTC	2 cut(s)	68, 223
BfuI	GTATCC	1 cut(s)	255
BisI	GCNGC	1 cut(s)	197
BlsI	GCNGC	1 cut(s)	198
Bme1390I	CCNGG	1 cut(s)	128
BmgT120I	GGNCC	1 cut(s)	268
BmrFI	CCNGG	1 cut(s)	128
BmrI	ACTGGG	1 cut(s)	275
BmuI	ACTGGG	1 cut(s)	275
Bpu14I	TTCGAA	1 cut(s)	242
BpuMI	CCSGG	1 cut(s)	128
Bsa29I	ATCGAT	1 cut(s)	174
BsaBI	GATNNNNATC	2 cut(s)	152, 180
BsaHI	GRCGYC	1 cut(s)	117
BsaJI	CCNNGG	1 cut(s)	271
BsaWI	WCCGGW	1 cut(s)	22
BsaXI	ACNNNNNCTCC	2 cut(s)	95, 125
Bsc4I	CCNNNNNNNGG	1 cut(s)	126
Bse118I	RCCGGY	1 cut(s)	192
Bse1I	ACTGG	1 cut(s)	270
Bse8I	GATNNNNATC	2 cut(s)	152, 180
BseAI	TCCGGA	1 cut(s)	22
BseCI	ATCGAT	1 cut(s)	174
BseDI	CCNNGG	1 cut(s)	271
BseGI	GGATG	1 cut(s)	123
BseJI	GATNNNNATC	2 cut(s)	152, 180
BseLI	CCNNNNNNNGG	1 cut(s)	126
BseMII	CTCAG	1 cut(s)	270
BseNI	ACTGG	1 cut(s)	270
BseRI	GAGGAG	1 cut(s)	241
BsgI	GTGCAG	1 cut(s)	170
BshFI	GGCC	2 cut(s)	213, 270
BshVI	ATCGAT	1 cut(s)	174
BsiSI	CCGG	3 cut(s)	23, 127, 193
BslI	CCNNNNNNNGG	1 cut(s)	126
BsmAI	GTCTC	2 cut(s)	68, 223
BsnI	GGCC	2 cut(s)	213, 270
Bsp119I	TTCGAA	1 cut(s)	242
Bsp13I	TCCGGA	1 cut(s)	22
Bsp143I	GATC	2 cut(s)	153, 181
BspACI	CCGC	1 cut(s)	196
BspANI	GGCC	2 cut(s)	213, 270
BspCNI	CTCAG	1 cut(s)	271
BspDI	ATCGAT	1 cut(s)	174
BspEI	TCCGGA	1 cut(s)	22
BspHI	TCATGA	1 cut(s)	72
BspPI	GGATC	2 cut(s)	161, 189
BspT104I	TTCGAA	1 cut(s)	242
BsrFI	RCCGGY	1 cut(s)	192
BsrI	ACTGG	1 cut(s)	270
BssAI	RCCGGY	1 cut(s)	192
BssECI	CCNNGG	1 cut(s)	271
BssMI	GATC	2 cut(s)	153, 181
BssNI	GRCGYC	1 cut(s)	117
Bst4CI	ACNGT	1 cut(s)	205
Bst6I	CTCTTC	1 cut(s)	239
BstACI	GRCGYC	1 cut(s)	117
BstBI	TTCGAA	1 cut(s)	242
BstC8I	GCNNGC	1 cut(s)	194
BstDEI	CTNAG	1 cut(s)	279
BstF5I	GGATG	1 cut(s)	123
BstKTI	GATC	2 cut(s)	156, 184
BstMAI	GTCTC	2 cut(s)	68, 223
BstMBI	GATC	2 cut(s)	153, 181
BstMWI	GCNNNNNNNGC	1 cut(s)	193
BstSCI	CCNGG	1 cut(s)	126
BstX2I	RGATCY	2 cut(s)	153, 181
BstYI	RGATCY	2 cut(s)	153, 181
Bsu15I	ATCGAT	1 cut(s)	174
BsuI	GTATCC	1 cut(s)	255
BsuRI	GGCC	2 cut(s)	213, 270
BsuTUI	ATCGAT	1 cut(s)	174
BtsCI	GGATG	1 cut(s)	123
Cac8I	GCNNGC	1 cut(s)	194
CciI	TCATGA	1 cut(s)	72
Cfr10I	RCCGGY	1 cut(s)	192
Cfr13I	GGNCC	1 cut(s)	268
ClaI	ATCGAT	1 cut(s)	174
CseI	GACGC	1 cut(s)	125
Csp6I	GTAC	1 cut(s)	288
CviAII	CATG	1 cut(s)	73
CviJI	RGCY	4 cut(s)	192, 199, 213, 270
CviKI_1	RGCY	4 cut(s)	192, 199, 213, 270
CviQI	GTAC	1 cut(s)	288
DdeI	CTNAG	1 cut(s)	279
DpnI	GATC	2 cut(s)	155, 183
DpnII	GATC	2 cut(s)	153, 181
EaeI	YGGCCR	1 cut(s)	211
Eam1104I	CTCTTC	1 cut(s)	239
EarI	CTCTTC	1 cut(s)	239
Eco32I	GATATC	1 cut(s)	172
EcoRV	GATATC	1 cut(s)	172
FaeI	CATG	1 cut(s)	76
FaiI	YATR	2 cut(s)	74, 210
FatI	CATG	1 cut(s)	72
Fnu4HI	GCNGC	1 cut(s)	197
FokI	GGATG	1 cut(s)	110
Fsp4HI	GCNGC	1 cut(s)	197
GluI	GCNGC	1 cut(s)	197
HaeIII	GGCC	2 cut(s)	213, 270
HapII	CCGG	3 cut(s)	23, 127, 193
HgaI	GACGC	1 cut(s)	125
Hin1I	GRCGYC	1 cut(s)	117
Hin1II	CATG	1 cut(s)	76
HinfI	GANTC	8 cut(s)	12, 26, 37, 69, 98, 110, 231, 239
HpaII	CCGG	3 cut(s)	23, 127, 193
Hpy188I	TCNGA	3 cut(s)	68, 103, 115
Hpy188III	TCNNGA	2 cut(s)	23, 73
Hpy99I	CGWCG	1 cut(s)	119
HpyCH4III	ACNGT	1 cut(s)	205
HpyCH4V	TGCA	1 cut(s)	187
HpyF10VI	GCNNNNNNNGC	1 cut(s)	193
HpyF3I	CTNAG	1 cut(s)	279
Hsp92I	GRCGYC	1 cut(s)	117
Hsp92II	CATG	1 cut(s)	76
Kpn2I	TCCGGA	1 cut(s)	22
KroI	GCCGGC	1 cut(s)	192
KroNI	GCCGGC	1 cut(s)	194
Kzo9I	GATC	2 cut(s)	153, 181
LpnPI	CCDG	6 cut(s)	36, 140, 178, 206, 227, 251
MalI	GATC	2 cut(s)	155, 183
MboI	GATC	2 cut(s)	153, 181
MboII	GAAGA	3 cut(s)	11, 37, 226
MflI	RGATCY	2 cut(s)	153, 181
MlsI	TGGCCA	1 cut(s)	213
MluCI	AATT	1 cut(s)	91
MluNI	TGGCCA	1 cut(s)	213
MlyI	GAGTC	3 cut(s)	92, 104, 225
MmeI	TCCRAC	2 cut(s)	126, 138
MnlI	CCTC	4 cut(s)	144, 172, 219, 281
Mox20I	TGGCCA	1 cut(s)	213
MroI	TCCGGA	1 cut(s)	22
MroNI	GCCGGC	1 cut(s)	192
MscI	TGGCCA	1 cut(s)	213
MseI	TTAA	1 cut(s)	295
Msp20I	TGGCCA	1 cut(s)	213
MspI	CCGG	3 cut(s)	23, 127, 193
MspR9I	CCNGG	1 cut(s)	128
MwoI	GCNNNNNNNGC	1 cut(s)	193
NaeI	GCCGGC	1 cut(s)	194
NciI	CCSGG	1 cut(s)	128
NdeII	GATC	2 cut(s)	153, 181
NgoMIV	GCCGGC	1 cut(s)	192
NlaIII	CATG	1 cut(s)	76
NspV	TTCGAA	1 cut(s)	242
PagI	TCATGA	1 cut(s)	72
PdiI	GCCGGC	1 cut(s)	194
PfeI	GAWTC	5 cut(s)	12, 26, 37, 69, 239
PkrI	GCNGC	1 cut(s)	198
PleI	GAGTC	3 cut(s)	92, 104, 225
PpsI	GAGTC	3 cut(s)	92, 104, 225
PspPI	GGNCC	1 cut(s)	268
PsuI	RGATCY	2 cut(s)	153, 181
RsaI	GTAC	1 cut(s)	289
RsaNI	GTAC	1 cut(s)	288
SaqAI	TTAA	1 cut(s)	295
SatI	GCNGC	1 cut(s)	197
Sau3AI	GATC	2 cut(s)	153, 181
Sau96I	GGNCC	1 cut(s)	268
SchI	GAGTC	3 cut(s)	92, 104, 225
ScrFI	CCNGG	1 cut(s)	128
SfuI	TTCGAA	1 cut(s)	242
Sse9I	AATT	1 cut(s)	91
SsiI	CCGC	1 cut(s)	196
StyD4I	CCNGG	1 cut(s)	126
TaaI	ACNGT	1 cut(s)	205
TaqI	TCGA	6 cut(s)	96, 146, 174, 221, 237, 242
TasI	AATT	1 cut(s)	91
TauI	GCSGC	1 cut(s)	199
TfiI	GAWTC	5 cut(s)	12, 26, 37, 69, 239
Tru1I	TTAA	1 cut(s)	295
Tru9I	TTAA	1 cut(s)	295
TspDTI	ATGAA	1 cut(s)	61

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.