Rh5AG329700

GPI-anchored protein At1g61900-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5A
OG0009727
Physical Location & Seq
Forward (+)
50339748 .. 50348335
8588 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5AG329700.1

Sequence Viewer

Length: 375 bp
ATGAAACATGTTCAACTTCGCTATGGGGATGAGATAATCAACCAGACAGCTTGCTGTACGGCAATGGATAGCTATGTTTCCCACTTGCAAGAGCAGAGTTTCATAACCAACTTGCAAGCTTTGGATTGTGTTGCATCACTGGGAATGAAGTTAAGAAAATCAAATATTACCAAAGATGTGTATAGCCTATGTCATTTAAGCCTCAAGGATTTCTCCCTTCAAGAGATAAGAGTGTTGTCAAGGGAGCCAAGGAGGAGATCGAATGAATTTTTGTTTGAGAGTGCCCAGGGAGATGCTGCTGCCAGTGCCATAGGAGGTAGAGCGCATGGAGGAGTTGCTTTTCTTGGCCTTGGCCATGGAATGCGAAGACGATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005623 GO:0005886 GO:0005911 GO:0009506 GO:0016020 GO:0030054 GO:0031224 GO:0031225 GO:0031226 GO:0044425 GO:0044459 GO:0044464 GO:0046658 GO:0055044 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

124

Amino Acids

13.8

Weight (kDa)

9.07

Isoelectric Point (pI)

64.91

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
At1g61900 PF26584 1 - 65 4.8e-28 At1g61900-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcoI YGGCCR 1 cut(s) 352
AcsI RAATTY 1 cut(s) 266
AfaI GTAC 1 cut(s) 58
AflIII ACRYGT 1 cut(s) 7
AgsI TTSAA 2 cut(s) 14, 221
AjnI CCWGG 1 cut(s) 285
AluBI AGCT 3 cut(s) 50, 72, 119
AluI AGCT 3 cut(s) 50, 72, 119
AoxI GGCC 2 cut(s) 346, 352
ApeKI GCWGC 2 cut(s) 296, 299
ApoI RAATTY 1 cut(s) 266
AspLEI GCGC 1 cut(s) 325
BaeGI GKGCMC 1 cut(s) 286
BalI TGGCCA 1 cut(s) 354
BbvI GCAGC 2 cut(s) 283, 286
BceAI ACGGC 1 cut(s) 75
BciT130I CCWGG 1 cut(s) 287
BisI GCNGC 2 cut(s) 297, 300
BlsI GCNGC 2 cut(s) 298, 301
Bme1390I CCNGG 1 cut(s) 287
BmiI GGNNCC 1 cut(s) 246
BmrFI CCNGG 1 cut(s) 287
BmrI ACTGGG 1 cut(s) 149
BmsI GCATC 2 cut(s) 143, 283
BmuI ACTGGG 1 cut(s) 149
BpuEI CTTGAG 1 cut(s) 188
BsaJI CCNNGG 5 cut(s) 248, 285, 286, 349, 355
Bse1I ACTGG 2 cut(s) 144, 303
Bse3DI GCAATG 1 cut(s) 69
BseBI CCWGG 1 cut(s) 287
BseDI CCNNGG 5 cut(s) 248, 285, 286, 349, 355
BseGI GGATG 1 cut(s) 34
BseMI GCAATG 1 cut(s) 69
BseNI ACTGG 2 cut(s) 144, 303
BseRI GAGGAG 2 cut(s) 268, 345
BseSI GKGCMC 1 cut(s) 286
BseXI GCAGC 2 cut(s) 283, 286
BshFI GGCC 2 cut(s) 348, 354
BsmI GAATGC 1 cut(s) 366
BsnI GGCC 2 cut(s) 348, 354
Bsp1286I GDGCHC 1 cut(s) 286
Bsp143I GATC 1 cut(s) 257
Bsp19I CCATGG 1 cut(s) 355
BspANI GGCC 2 cut(s) 348, 354
BspLI GGNNCC 1 cut(s) 246
BsrDI GCAATG 1 cut(s) 69
BsrI ACTGG 2 cut(s) 144, 303
BssECI CCNNGG 5 cut(s) 248, 285, 286, 349, 355
BssMI GATC 1 cut(s) 257
BssT1I CCWWGG 3 cut(s) 248, 349, 355
Bst2UI CCWGG 1 cut(s) 287
BstC8I GCNNGC 2 cut(s) 52, 117
BstDSI CCRYGG 1 cut(s) 355
BstF5I GGATG 1 cut(s) 34
BstHHI GCGC 1 cut(s) 325
BstKTI GATC 1 cut(s) 260
BstMBI GATC 1 cut(s) 257
BstMWI GCNNNNNNNGC 1 cut(s) 305
BstNI CCWGG 1 cut(s) 287
BstNSI RCATGY 1 cut(s) 11
BstSCI CCNGG 1 cut(s) 285
BstSLI GKGCMC 1 cut(s) 286
BstV1I GCAGC 2 cut(s) 283, 286
BsuRI GGCC 2 cut(s) 348, 354
BtgI CCRYGG 1 cut(s) 355
BtsCI GGATG 1 cut(s) 34
BtsIMutI CAGTG 2 cut(s) 137, 310
Cac8I GCNNGC 2 cut(s) 52, 117
CfoI GCGC 1 cut(s) 325
Csp6I GTAC 1 cut(s) 57
CviAII CATG 3 cut(s) 8, 326, 356
CviJI RGCY 8 cut(s) 50, 72, 119, 186, 201, 247, 348, 354
CviKI_1 RGCY 8 cut(s) 50, 72, 119, 186, 201, 247, 348, 354
CviQI GTAC 1 cut(s) 57
DpnI GATC 1 cut(s) 259
DpnII GATC 1 cut(s) 257
EaeI YGGCCR 1 cut(s) 352
Eco130I CCWWGG 3 cut(s) 248, 349, 355
EcoRII CCWGG 1 cut(s) 285
EcoT14I CCWWGG 3 cut(s) 248, 349, 355
ErhI CCWWGG 3 cut(s) 248, 349, 355
FaeI CATG 3 cut(s) 11, 329, 359
FaiI YATR 9 cut(s) 9, 24, 75, 104, 183, 190, 311, 327, 357
FatI CATG 3 cut(s) 7, 325, 355
Fnu4HI GCNGC 2 cut(s) 297, 300
FokI GGATG 1 cut(s) 41
Fsp4HI GCNGC 2 cut(s) 297, 300
GlaI GCGC 1 cut(s) 324
GluI GCNGC 2 cut(s) 297, 300
HaeIII GGCC 2 cut(s) 348, 354
HhaI GCGC 1 cut(s) 325
Hin1II CATG 3 cut(s) 11, 329, 359
Hin6I GCGC 1 cut(s) 323
HinP1I GCGC 1 cut(s) 323
HindIII AAGCTT 1 cut(s) 117
Hpy188III TCNNGA 1 cut(s) 221
HpyAV CCTTC 1 cut(s) 227
HpyCH4V TGCA 3 cut(s) 88, 115, 134
HpyF10VI GCNNNNNNNGC 1 cut(s) 305
Hsp92II CATG 3 cut(s) 11, 329, 359
HspAI GCGC 1 cut(s) 323
Kzo9I GATC 1 cut(s) 257
LmnI GCTCC 1 cut(s) 244
LpnPI CCDG 5 cut(s) 56, 125, 272, 299, 316
Lsp1109I GCAGC 2 cut(s) 283, 286
LweI GCATC 2 cut(s) 143, 283
MalI GATC 1 cut(s) 259
MboI GATC 1 cut(s) 257
MhlI GDGCHC 1 cut(s) 286
MlsI TGGCCA 1 cut(s) 354
MluCI AATT 1 cut(s) 266
MluNI TGGCCA 1 cut(s) 354
MnlI CCTC 4 cut(s) 212, 246, 308, 323
Mox20I TGGCCA 1 cut(s) 354
MscI TGGCCA 1 cut(s) 354
MseI TTAA 2 cut(s) 152, 197
Msp20I TGGCCA 1 cut(s) 354
MspR9I CCNGG 1 cut(s) 287
Mva1269I GAATGC 1 cut(s) 366
MvaI CCWGG 1 cut(s) 287
MwoI GCNNNNNNNGC 1 cut(s) 305
NcoI CCATGG 1 cut(s) 355
NdeII GATC 1 cut(s) 257
NlaIII CATG 3 cut(s) 11, 329, 359
NlaIV GGNNCC 1 cut(s) 246
NspI RCATGY 1 cut(s) 11
PasI CCCWGGG 1 cut(s) 286
PciI ACATGT 1 cut(s) 7
PctI GAATGC 1 cut(s) 366
PkrI GCNGC 2 cut(s) 298, 301
PscI ACATGT 1 cut(s) 7
Psp6I CCWGG 1 cut(s) 285
PspGI CCWGG 1 cut(s) 285
PspN4I GGNNCC 1 cut(s) 246
RsaI GTAC 1 cut(s) 58
RsaNI GTAC 1 cut(s) 57
SaqAI TTAA 2 cut(s) 152, 197
SatI GCNGC 2 cut(s) 297, 300
Sau3AI GATC 1 cut(s) 257
ScrFI CCNGG 1 cut(s) 287
SduI GDGCHC 1 cut(s) 286
SetI ASST 4 cut(s) 52, 74, 121, 319
SfaNI GCATC 2 cut(s) 143, 283
SmlI CTYRAG 1 cut(s) 203
SmoI CTYRAG 1 cut(s) 203
Sse9I AATT 1 cut(s) 266
SspI AATATT 1 cut(s) 166
StyD4I CCNGG 1 cut(s) 285
StyI CCWWGG 3 cut(s) 248, 349, 355
TaqI TCGA 1 cut(s) 260
TasI AATT 1 cut(s) 266
Tru1I TTAA 2 cut(s) 152, 197
Tru9I TTAA 2 cut(s) 152, 197
TscAI CASTG 2 cut(s) 144, 310
TseI GCWGC 2 cut(s) 296, 299
TspDTI ATGAA 4 cut(s) 17, 91, 161, 279
TspRI CASTG 2 cut(s) 144, 310
XapI RAATTY 1 cut(s) 266
XceI RCATGY 1 cut(s) 11
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.