Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6D

Orthogroup ID

OG0009727

Physical Location & Seq

Genomic Coordinates Reverse (-)

58188414 .. 58188743

Gene Structure 330 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6DG389100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 330 bp

ATGCGTCGTCGTGCAGCACGGTTTCGACTCAGACAGAAACTCTGGTGCAATCGTCGTGCCACAAATCGGTCTGGCATCGAGGCTCAATCCGCCGACGTGCAGCACAGACTTCCACTCCGACGCCGACAGCCGGGCAATCGGTGTTGGTCGATGAGGAACTGCAACACCGGAGATATTGATGAGGATCTGCATAGCCTGTGGCTAGCTGTCTATGACCGGAAGACGATGAGGAGACTCTTCAATTCGAATGTTCTGATCTCAGGGATCCCGGGGGTTTCCGGAATTCGAGGGAGCTGTGAGGTTGGGAAGGAACGAAGGAGGTGTTTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0005886 GO:0005911 GO:0006464 GO:0006807 GO:0006950 GO:0006974 GO:0008150 GO:0008152 GO:0009506 GO:0009605 GO:0009607 GO:0009987 GO:0010035 GO:0010038 GO:0016020 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0030054 GO:0032446 GO:0033554 GO:0036211 GO:0042221 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0046686 GO:0050896 GO:0051704 GO:0051707 GO:0051716 GO:0055044 GO:0070647 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04120 ko05012 map04120 map05012

Pfam Domains

Protein Families

E1_4HB E1_FCCH E1_UFD ThiF UBA_e1_thiolCys

Protein Analysis

109

Amino Acids

12.84

Weight (kDa)

11.59

Isoelectric Point (pI)

76.42

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009727)

Species	Orthologous Gene IDs
malus_domestica	MD05G1345000.v1.1
rosa_chinensis	RchiOBHm_Chr5g0060961
rosa_laevigata	RLG00000028318 RLG00000032438
rosa_multiflora	Rmu_co8107644.1_g000001 Rmu_co8229399.1_g000001 Rmu_sc0000316.1_g000006 Rmu_sc0000640.1_g000014 Rmu_sc0007627.1_g000004 Rmu_sc0010917.1_g000006
rosa_roxburghii	Rroxscaffold_152G00434550 Rroxscaffold_2G00100700 Rroxscaffold_2G00103070 Rroxscaffold_5G00366020
rosa_samantha	Rh4CG162900 Rh5AG329700 Rh5AG398100 Rh5BG410900 Rh5CG436000 Rh5DG425300 Rh5DG425400 Rh6DG389100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	278
AciI	CCGC	1 cut(s)	90
AclWI	GGATC	3 cut(s)	192, 259, 272
AcsI	RAATTY	1 cut(s)	282
AcyI	GRCGYC	1 cut(s)	121
AfiI	CCNNNNNNNGG	2 cut(s)	66, 130
AgsI	TTSAA	1 cut(s)	241
AjiI	CACGTC	1 cut(s)	97
AluBI	AGCT	2 cut(s)	206, 294
AluI	AGCT	2 cut(s)	206, 294
Alw26I	GTCTC	1 cut(s)	226
AlwI	GGATC	3 cut(s)	192, 259, 272
Ama87I	CYCGRG	1 cut(s)	268
Aor13HI	TCCGGA	1 cut(s)	278
ApeKI	GCWGC	2 cut(s)	14, 100
ApoI	RAATTY	1 cut(s)	282
AsuC2I	CCSGG	3 cut(s)	132, 269, 270
AsuII	TTCGAA	1 cut(s)	245
AsuNHI	GCTAGC	1 cut(s)	202
AvaI	CYCGRG	1 cut(s)	268
BamHI	GGATCC	1 cut(s)	264
BbsI	GAAGAC	1 cut(s)	227
BbvI	GCAGC	2 cut(s)	26, 112
BcnI	CCSGG	3 cut(s)	132, 269, 270
BcoDI	GTCTC	1 cut(s)	226
BfaI	CTAG	1 cut(s)	203
BisI	GCNGC	2 cut(s)	15, 101
BlsI	GCNGC	2 cut(s)	16, 102
Bme1390I	CCNGG	3 cut(s)	132, 269, 270
BmeT110I	CYCGRG	1 cut(s)	268
BmgBI	CACGTC	1 cut(s)	97
BmiI	GGNNCC	1 cut(s)	266
BmrFI	CCNGG	3 cut(s)	132, 269, 270
BmsI	GCATC	1 cut(s)	84
BmtI	GCTAGC	1 cut(s)	206
BpiI	GAAGAC	1 cut(s)	227
Bpu14I	TTCGAA	1 cut(s)	245
BpuMI	CCSGG	3 cut(s)	132, 269, 270
BsaBI	GATNNNNATC	1 cut(s)	183
BsaHI	GRCGYC	1 cut(s)	121
BsaJI	CCNNGG	2 cut(s)	268, 269
BsaWI	WCCGGW	3 cut(s)	167, 216, 278
BsaXI	ACNNNNNCTCC	2 cut(s)	99, 129
Bsc4I	CCNNNNNNNGG	2 cut(s)	66, 130
Bse8I	GATNNNNATC	1 cut(s)	183
BseAI	TCCGGA	1 cut(s)	278
BseDI	CCNNGG	2 cut(s)	268, 269
BseJI	GATNNNNATC	1 cut(s)	183
BseLI	CCNNNNNNNGG	2 cut(s)	66, 130
BseMII	CTCAG	2 cut(s)	43, 273
BseRI	GAGGAG	1 cut(s)	244
BseXI	GCAGC	2 cut(s)	26, 112
BsgI	GTGCAG	2 cut(s)	33, 119
BsiHKCI	CYCGRG	1 cut(s)	268
BsiSI	CCGG	5 cut(s)	131, 168, 217, 269, 279
BslI	CCNNNNNNNGG	2 cut(s)	66, 130
BsmAI	GTCTC	1 cut(s)	226
BsoBI	CYCGRG	1 cut(s)	268
Bsp119I	TTCGAA	1 cut(s)	245
Bsp13I	TCCGGA	1 cut(s)	278
Bsp143I	GATC	3 cut(s)	184, 255, 264
BspACI	CCGC	1 cut(s)	90
BspCNI	CTCAG	2 cut(s)	42, 272
BspEI	TCCGGA	1 cut(s)	278
BspLI	GGNNCC	1 cut(s)	266
BspOI	GCTAGC	1 cut(s)	206
BspPI	GGATC	3 cut(s)	192, 259, 272
BspT104I	TTCGAA	1 cut(s)	245
BssECI	CCNNGG	2 cut(s)	268, 269
BssMI	GATC	3 cut(s)	184, 255, 264
BssNI	GRCGYC	1 cut(s)	121
Bst4CI	ACNGT	1 cut(s)	21
Bst6I	CTCTTC	1 cut(s)	242
BstACI	GRCGYC	1 cut(s)	121
BstBI	TTCGAA	1 cut(s)	245
BstC8I	GCNNGC	1 cut(s)	204
BstDEI	CTNAG	2 cut(s)	29, 259
BstKTI	GATC	3 cut(s)	187, 258, 267
BstMAI	GTCTC	1 cut(s)	226
BstMBI	GATC	3 cut(s)	184, 255, 264
BstMWI	GCNNNNNNNGC	1 cut(s)	89
BstSCI	CCNGG	3 cut(s)	130, 267, 268
BstV1I	GCAGC	2 cut(s)	26, 112
BstV2I	GAAGAC	1 cut(s)	227
BstX2I	RGATCY	2 cut(s)	184, 264
BstYI	RGATCY	2 cut(s)	184, 264
BtrI	CACGTC	1 cut(s)	97
Cac8I	GCNNGC	1 cut(s)	204
Cfr9I	CCCGGG	1 cut(s)	268
CseI	GACGC	1 cut(s)	129
CviJI	RGCY	6 cut(s)	83, 130, 195, 202, 206, 294
CviKI_1	RGCY	6 cut(s)	83, 130, 195, 202, 206, 294
DdeI	CTNAG	2 cut(s)	29, 259
DpnI	GATC	3 cut(s)	186, 257, 266
DpnII	GATC	3 cut(s)	184, 255, 264
Eam1104I	CTCTTC	1 cut(s)	242
EarI	CTCTTC	1 cut(s)	242
EciI	GGCGGA	1 cut(s)	79
Eco88I	CYCGRG	1 cut(s)	268
EcoRI	GAATTC	1 cut(s)	282
FaiI	YATR	2 cut(s)	192, 213
Fnu4HI	GCNGC	2 cut(s)	15, 101
Fsp4HI	GCNGC	2 cut(s)	15, 101
FspBI	CTAG	1 cut(s)	203
GluI	GCNGC	2 cut(s)	15, 101
HapII	CCGG	5 cut(s)	131, 168, 217, 269, 279
HgaI	GACGC	1 cut(s)	129
Hin1I	GRCGYC	1 cut(s)	121
HinfI	GANTC	2 cut(s)	27, 234
HpaII	CCGG	5 cut(s)	131, 168, 217, 269, 279
Hpy188I	TCNGA	4 cut(s)	32, 119, 255, 329
Hpy188III	TCNNGA	1 cut(s)	279
Hpy99I	CGWCG	5 cut(s)	9, 12, 57, 98, 123
HpyAV	CCTTC	2 cut(s)	301, 309
HpyCH4III	ACNGT	1 cut(s)	21
HpyCH4IV	ACGT	1 cut(s)	96
HpyCH4V	TGCA	5 cut(s)	14, 48, 100, 162, 190
HpyF10VI	GCNNNNNNNGC	1 cut(s)	89
HpyF3I	CTNAG	2 cut(s)	29, 259
HpySE526I	ACGT	1 cut(s)	96
Hsp92I	GRCGYC	1 cut(s)	121
Kpn2I	TCCGGA	1 cut(s)	278
Kzo9I	GATC	3 cut(s)	184, 255, 264
LmnI	GCTCC	1 cut(s)	291
LpnPI	CCDG	9 cut(s)	28, 57, 144, 181, 209, 230, 246, 282, 292
Lsp1109I	GCAGC	2 cut(s)	26, 112
LweI	GCATC	1 cut(s)	84
MaeI	CTAG	1 cut(s)	203
MaeII	ACGT	1 cut(s)	96
MalI	GATC	3 cut(s)	186, 257, 266
MboI	GATC	3 cut(s)	184, 255, 264
MboII	GAAGA	2 cut(s)	229, 232
MflI	RGATCY	2 cut(s)	184, 264
MluCI	AATT	2 cut(s)	241, 282
MlyI	GAGTC	2 cut(s)	21, 228
MmeI	TCCRAC	1 cut(s)	142
MnlI	CCTC	7 cut(s)	73, 147, 175, 222, 281, 292, 312
MroI	TCCGGA	1 cut(s)	278
MspI	CCGG	5 cut(s)	131, 168, 217, 269, 279
MspR9I	CCNGG	3 cut(s)	132, 269, 270
MwoI	GCNNNNNNNGC	1 cut(s)	89
NciI	CCSGG	3 cut(s)	132, 269, 270
NdeII	GATC	3 cut(s)	184, 255, 264
NheI	GCTAGC	1 cut(s)	202
NlaIV	GGNNCC	1 cut(s)	266
NspV	TTCGAA	1 cut(s)	245
PkrI	GCNGC	2 cut(s)	16, 102
PleI	GAGTC	2 cut(s)	21, 228
PpsI	GAGTC	2 cut(s)	21, 228
PspN4I	GGNNCC	1 cut(s)	266
PsuI	RGATCY	2 cut(s)	184, 264
SatI	GCNGC	2 cut(s)	15, 101
Sau3AI	GATC	3 cut(s)	184, 255, 264
SchI	GAGTC	2 cut(s)	21, 228
ScrFI	CCNGG	3 cut(s)	132, 269, 270
SetI	ASST	5 cut(s)	99, 208, 296, 303, 323
SfaNI	GCATC	1 cut(s)	84
SfuI	TTCGAA	1 cut(s)	245
SmaI	CCCGGG	1 cut(s)	270
Sse9I	AATT	2 cut(s)	241, 282
SsiI	CCGC	1 cut(s)	90
SspMI	CTAG	1 cut(s)	203
StyD4I	CCNGG	3 cut(s)	130, 267, 268
TaaI	ACNGT	1 cut(s)	21
TaiI	ACGT	1 cut(s)	99
TaqI	TCGA	5 cut(s)	25, 78, 149, 245, 286
TaqII	GACCGA	1 cut(s)	57
TasI	AATT	2 cut(s)	241, 282
TseI	GCWGC	2 cut(s)	14, 100
TspMI	CCCGGG	1 cut(s)	268
XapI	RAATTY	1 cut(s)	282
XmaI	CCCGGG	1 cut(s)	268
XspI	CTAG	1 cut(s)	203

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.