RchiOBHm_Chr5g0079741

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
OG0002689
Physical Location & Seq
Forward (+)
85470748 .. 85473670
2923 bp
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UTR
Exon/CDS
Intron
PRQ35411

Sequence Viewer

Length: 351 bp
ATGAGTTCTTCACTCTCTGGTTCATCTCACTCTTCCCGACCCAATGAAGACCAGGGACATGCTCAGCTTCATGCATTAGAGGGTGAAAGGCAGCGTAGAAATAATCGTCAAAGAGAGAGACGACGATTATTGAGTTCTTCGCAACTAGAGGAAAGTTTAGCCCGAAGACGTGCCAATTATCAAAGACTACAGCAAATGGAGCCCACAAGTGTATTAAATCAAGTGGAAGCAATGGCCGGTAACTTACTGAGTGCATGTTCTGAAACACAAACATCTTCAACGTATTGTATACGTGTTTTGCATAATTTTCTTTCTACTTTCATGAACAAAAATAATATTCTATATATGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

116

Amino Acids

13.33

Weight (kDa)

10.01

Isoelectric Point (pI)

87.91

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 289
AcoI YGGCCR 1 cut(s) 234
AflIII ACRYGT 1 cut(s) 292
AgsI TTSAA 1 cut(s) 279
AjiI CACGTC 1 cut(s) 170
AjnI CCWGG 1 cut(s) 51
AluBI AGCT 1 cut(s) 67
AluI AGCT 1 cut(s) 67
Alw26I GTCTC 1 cut(s) 112
AoxI GGCC 1 cut(s) 234
ApeKI GCWGC 1 cut(s) 91
AsuHPI GGTGA 1 cut(s) 95
BanII GRGCYC 1 cut(s) 204
BbsI GAAGAC 2 cut(s) 54, 172
BbvI GCAGC 1 cut(s) 103
BciT130I CCWGG 1 cut(s) 53
BcoDI GTCTC 1 cut(s) 112
BfaI CTAG 1 cut(s) 146
BfmI CTRYAG 1 cut(s) 188
BisI GCNGC 1 cut(s) 92
BlpI GCTNAGC 1 cut(s) 63
BlsI GCNGC 1 cut(s) 93
Bme1390I CCNGG 1 cut(s) 53
BmgBI CACGTC 1 cut(s) 170
BmiI GGNNCC 1 cut(s) 201
BmrFI CCNGG 1 cut(s) 53
BpiI GAAGAC 2 cut(s) 54, 172
Bpu1102I GCTNAGC 1 cut(s) 63
BsaAI YACGTR 1 cut(s) 293
BsaJI CCNNGG 1 cut(s) 52
Bse118I RCCGGY 1 cut(s) 236
Bse3DI GCAATG 1 cut(s) 237
BseBI CCWGG 1 cut(s) 53
BseDI CCNNGG 1 cut(s) 52
BseMI GCAATG 1 cut(s) 237
BseMII CTCAG 2 cut(s) 77, 239
BseXI GCAGC 1 cut(s) 103
BshFI GGCC 1 cut(s) 236
BsiSI CCGG 1 cut(s) 237
BslFI GGGAC 1 cut(s) 69
BsmAI GTCTC 1 cut(s) 112
BsmBI CGTCTC 1 cut(s) 112
BsmFI GGGAC 1 cut(s) 69
BsnI GGCC 1 cut(s) 236
Bsp1286I GDGCHC 1 cut(s) 204
Bsp1720I GCTNAGC 1 cut(s) 63
BspANI GGCC 1 cut(s) 236
BspCNI CTCAG 2 cut(s) 76, 240
BspHI TCATGA 1 cut(s) 321
BspLI GGNNCC 1 cut(s) 201
BsrDI GCAATG 1 cut(s) 237
BsrFI RCCGGY 1 cut(s) 236
BssAI RCCGGY 1 cut(s) 236
BssECI CCNNGG 1 cut(s) 52
BssNAI GTATAC 1 cut(s) 290
Bst1107I GTATAC 1 cut(s) 290
Bst2UI CCWGG 1 cut(s) 53
Bst6I CTCTTC 1 cut(s) 37
BstBAI YACGTR 1 cut(s) 293
BstDEI CTNAG 2 cut(s) 63, 248
BstMAI GTCTC 1 cut(s) 112
BstMWI GCNNNNNNNGC 1 cut(s) 199
BstNI CCWGG 1 cut(s) 53
BstNSI RCATGY 2 cut(s) 62, 258
BstSCI CCNGG 1 cut(s) 51
BstSFI CTRYAG 1 cut(s) 188
BstV1I GCAGC 1 cut(s) 103
BstV2I GAAGAC 2 cut(s) 54, 172
BstZ17I GTATAC 1 cut(s) 290
BsuRI GGCC 1 cut(s) 236
BtrI CACGTC 1 cut(s) 170
CciI TCATGA 1 cut(s) 321
Cfr10I RCCGGY 1 cut(s) 236
CviAII CATG 4 cut(s) 59, 71, 255, 322
CviJI RGCY 4 cut(s) 67, 161, 202, 236
CviKI_1 RGCY 4 cut(s) 67, 161, 202, 236
DdeI CTNAG 2 cut(s) 63, 248
EaeI YGGCCR 1 cut(s) 234
Eam1104I CTCTTC 1 cut(s) 37
EarI CTCTTC 1 cut(s) 37
Eco24I GRGCYC 1 cut(s) 204
EcoRII CCWGG 1 cut(s) 51
EcoT22I ATGCAT 1 cut(s) 76
EcoT38I GRGCYC 1 cut(s) 204
Esp3I CGTCTC 1 cut(s) 112
FaeI CATG 4 cut(s) 62, 74, 258, 325
FaiI YATR 9 cut(s) 60, 72, 256, 290, 303, 323, 343, 345, 347
FaqI GGGAC 1 cut(s) 69
FatI CATG 4 cut(s) 58, 70, 254, 321
FblI GTMKAC 1 cut(s) 289
Fnu4HI GCNGC 1 cut(s) 92
FriOI GRGCYC 1 cut(s) 204
Fsp4HI GCNGC 1 cut(s) 92
FspBI CTAG 1 cut(s) 146
GluI GCNGC 1 cut(s) 92
HaeIII GGCC 1 cut(s) 236
HapII CCGG 1 cut(s) 237
Hin1II CATG 4 cut(s) 62, 74, 258, 325
HpaII CCGG 1 cut(s) 237
HphI GGTGA 1 cut(s) 95
Hpy166II GTNNAC 1 cut(s) 290
Hpy188I TCNGA 1 cut(s) 262
Hpy188III TCNNGA 2 cut(s) 36, 322
Hpy8I GTNNAC 1 cut(s) 290
Hpy99I CGWCG 1 cut(s) 126
HpyCH4IV ACGT 3 cut(s) 169, 281, 292
HpyCH4V TGCA 3 cut(s) 74, 254, 301
HpyF10VI GCNNNNNNNGC 1 cut(s) 199
HpyF3I CTNAG 2 cut(s) 63, 248
HpySE526I ACGT 3 cut(s) 169, 281, 292
Hsp92II CATG 4 cut(s) 62, 74, 258, 325
LmnI GCTCC 1 cut(s) 199
LpnPI CCDG 4 cut(s) 3, 38, 65, 250
Lsp1109I GCAGC 1 cut(s) 103
MaeI CTAG 1 cut(s) 146
MaeII ACGT 3 cut(s) 169, 281, 292
MaeIII GTNAC 1 cut(s) 239
MboII GAAGA 5 cut(s) 24, 59, 129, 177, 267
MhlI GDGCHC 1 cut(s) 204
MluCI AATT 2 cut(s) 175, 304
MnlI CCTC 2 cut(s) 73, 142
Mph1103I ATGCAT 1 cut(s) 76
MseI TTAA 1 cut(s) 215
MspI CCGG 1 cut(s) 237
MspR9I CCNGG 1 cut(s) 53
MvaI CCWGG 1 cut(s) 53
MwoI GCNNNNNNNGC 1 cut(s) 199
NlaIII CATG 4 cut(s) 62, 74, 258, 325
NlaIV GGNNCC 1 cut(s) 201
NsiI ATGCAT 1 cut(s) 76
NspI RCATGY 2 cut(s) 62, 258
PagI TCATGA 1 cut(s) 321
PkrI GCNGC 1 cut(s) 93
Ppu21I YACGTR 1 cut(s) 293
Psp6I CCWGG 1 cut(s) 51
PspGI CCWGG 1 cut(s) 51
PspN4I GGNNCC 1 cut(s) 201
SaqAI TTAA 1 cut(s) 215
SatI GCNGC 1 cut(s) 92
ScrFI CCNGG 1 cut(s) 53
SduI GDGCHC 1 cut(s) 204
SetI ASST 4 cut(s) 69, 172, 284, 295
SfcI CTRYAG 1 cut(s) 188
Sse9I AATT 2 cut(s) 175, 304
SspI AATATT 1 cut(s) 337
SspMI CTAG 1 cut(s) 146
StyD4I CCNGG 1 cut(s) 51
TaiI ACGT 3 cut(s) 172, 284, 295
TasI AATT 2 cut(s) 175, 304
Tru1I TTAA 1 cut(s) 215
Tru9I TTAA 1 cut(s) 215
TseI GCWGC 1 cut(s) 91
TspDTI ATGAA 5 cut(s) 12, 59, 60, 310, 338
XceI RCATGY 2 cut(s) 62, 258
XmiI GTMKAC 1 cut(s) 289
XspI CTAG 1 cut(s) 146
Zsp2I ATGCAT 1 cut(s) 76
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.