Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0002689

Physical Location & Seq

Genomic Coordinates Reverse (-)

83543671 .. 83544965

Gene Structure 1295 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG603400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 387 bp

ATGGGCCAGGTTCCTTCATCACGCTCTCACACACCTAATGACGACCAGGGACCTAACCCTATTCATGTACAAGAGGCAGAAAGGCAGAGTAGAAATAATCCCCCGGGAGAGACGAGACAATCAATGAGTTCTTCACTCTCTGTTTTATCACACTCTTCCCGACCCAATGAAGACCAGGGACACGCTCAGCTTCATGCATTAGAGGGTGAAAGGCAGCGTAGAAATAATCGTCAAAGAGAGAGACGACGATTATTGAGTTCTTCGCAACAAGAGGAAAGTTTAGCCCGAAGACGTGCCAATTATCAAAGACTACGGCAAATGGAGGCCACAAGTGTATCAAATCAAGTGGAAGCAATGGCCGGTAACTTACTGAGTGCATGTTCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

128

Amino Acids

14.45

Weight (kDa)

10.83

Isoelectric Point (pI)

88.83

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002689)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g12080 FvH4_3g27050 FvH4_4g08921 FvH4_5g28372
rosa_chinensis	RchiOBHm_Chr1g0349481 RchiOBHm_Chr1g0374471 RchiOBHm_Chr5g0079741
rosa_laevigata	RLG00000017976
rosa_roxburghii	Rroxscaffold_3G00244850
rosa_rugosa	Rorug04G0258600
rosa_samantha	Rh1AG409300 Rh1AG410000 Rh1AG410700 Rh1BG371600 Rh1CG384300 Rh1CG385300 Rh1DG401200 Rh1DG402300 Rh2AG244300 Rh2AG246200 Rh2AG314700 Rh2AG497800 Rh2BG107600 Rh2CG109400 Rh2CG333100 Rh2CG483800 Rh2DG253100 Rh2DG254400 Rh2DG403900 Rh2DG603400 Rh4AG011800 Rh4DG085100 Rh4DG137800 Rh5AG127700 Rh5AG128200 Rh5BG534800 Rh6AG131600 Rh6BG257800 Rh7BG020500 Rh7CG030700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcoI	YGGCCR	1 cut(s)	357
AfaI	GTAC	1 cut(s)	69
AjiI	CACGTC	1 cut(s)	293
AjnI	CCWGG	3 cut(s)	6, 45, 174
AluBI	AGCT	1 cut(s)	190
AluI	AGCT	1 cut(s)	190
Alw26I	GTCTC	3 cut(s)	104, 109, 235
Ama87I	CYCGRG	1 cut(s)	103
AoxI	GGCC	3 cut(s)	4, 324, 357
ApeKI	GCWGC	1 cut(s)	214
AspS9I	GGNCC	2 cut(s)	4, 50
AsuC2I	CCSGG	2 cut(s)	104, 105
AsuHPI	GGTGA	1 cut(s)	218
AvaI	CYCGRG	1 cut(s)	103
AvaII	GGWCC	1 cut(s)	50
BaeI	ACNNNNGTAYC	2 cut(s)	318, 351
BbsI	GAAGAC	2 cut(s)	177, 295
BbvI	GCAGC	1 cut(s)	226
BceAI	ACGGC	1 cut(s)	329
BciT130I	CCWGG	3 cut(s)	8, 47, 176
BcnI	CCSGG	2 cut(s)	104, 105
BcoDI	GTCTC	3 cut(s)	104, 109, 235
BisI	GCNGC	1 cut(s)	215
BlpI	GCTNAGC	1 cut(s)	186
BlsI	GCNGC	1 cut(s)	216
Bme1390I	CCNGG	5 cut(s)	8, 47, 104, 105, 176
Bme18I	GGWCC	1 cut(s)	50
BmeT110I	CYCGRG	1 cut(s)	103
BmgBI	CACGTC	1 cut(s)	293
BmgT120I	GGNCC	2 cut(s)	4, 50
BmiI	GGNNCC	2 cut(s)	12, 51
BmrFI	CCNGG	5 cut(s)	8, 47, 104, 105, 176
BpiI	GAAGAC	2 cut(s)	177, 295
Bpu1102I	GCTNAGC	1 cut(s)	186
BpuMI	CCSGG	2 cut(s)	104, 105
BsaJI	CCNNGG	4 cut(s)	46, 102, 103, 175
Bse118I	RCCGGY	1 cut(s)	359
Bse3DI	GCAATG	1 cut(s)	360
BseBI	CCWGG	3 cut(s)	8, 47, 176
BseDI	CCNNGG	4 cut(s)	46, 102, 103, 175
BseMI	GCAATG	1 cut(s)	360
BseMII	CTCAG	2 cut(s)	200, 362
BseXI	GCAGC	1 cut(s)	226
BshFI	GGCC	3 cut(s)	6, 326, 359
BsiHKCI	CYCGRG	1 cut(s)	103
BsiSI	CCGG	2 cut(s)	104, 360
BslFI	GGGAC	2 cut(s)	63, 192
BsmAI	GTCTC	3 cut(s)	104, 109, 235
BsmBI	CGTCTC	2 cut(s)	104, 235
BsmFI	GGGAC	2 cut(s)	63, 192
BsnI	GGCC	3 cut(s)	6, 326, 359
BsoBI	CYCGRG	1 cut(s)	103
Bsp1407I	TGTACA	1 cut(s)	67
Bsp1720I	GCTNAGC	1 cut(s)	186
BspANI	GGCC	3 cut(s)	6, 326, 359
BspCNI	CTCAG	2 cut(s)	199, 363
BspLI	GGNNCC	2 cut(s)	12, 51
BsrDI	GCAATG	1 cut(s)	360
BsrFI	RCCGGY	1 cut(s)	359
BsrGI	TGTACA	1 cut(s)	67
BssAI	RCCGGY	1 cut(s)	359
BssECI	CCNNGG	4 cut(s)	46, 102, 103, 175
Bst2UI	CCWGG	3 cut(s)	8, 47, 176
Bst6I	CTCTTC	1 cut(s)	160
BstAUI	TGTACA	1 cut(s)	67
BstDEI	CTNAG	2 cut(s)	186, 371
BstMAI	GTCTC	3 cut(s)	104, 109, 235
BstNI	CCWGG	3 cut(s)	8, 47, 176
BstNSI	RCATGY	1 cut(s)	381
BstSCI	CCNGG	5 cut(s)	6, 45, 102, 103, 174
BstV1I	GCAGC	1 cut(s)	226
BstV2I	GAAGAC	2 cut(s)	177, 295
BsuRI	GGCC	3 cut(s)	6, 326, 359
BtrI	CACGTC	1 cut(s)	293
Cfr10I	RCCGGY	1 cut(s)	359
Cfr13I	GGNCC	2 cut(s)	4, 50
Cfr9I	CCCGGG	1 cut(s)	103
Csp6I	GTAC	1 cut(s)	68
CspCI	CAANNNNNGTGG	2 cut(s)	327, 362
CviAII	CATG	3 cut(s)	65, 194, 378
CviJI	RGCY	5 cut(s)	6, 190, 284, 326, 359
CviKI_1	RGCY	5 cut(s)	6, 190, 284, 326, 359
CviQI	GTAC	1 cut(s)	68
DdeI	CTNAG	2 cut(s)	186, 371
EaeI	YGGCCR	1 cut(s)	357
Eam1104I	CTCTTC	1 cut(s)	160
EarI	CTCTTC	1 cut(s)	160
Eco47I	GGWCC	1 cut(s)	50
Eco88I	CYCGRG	1 cut(s)	103
EcoO109I	RGGNCCY	1 cut(s)	50
EcoRII	CCWGG	3 cut(s)	6, 45, 174
EcoT22I	ATGCAT	1 cut(s)	199
Esp3I	CGTCTC	2 cut(s)	104, 235
FaeI	CATG	3 cut(s)	68, 197, 381
FaiI	YATR	3 cut(s)	66, 195, 379
FaqI	GGGAC	2 cut(s)	63, 192
FatI	CATG	3 cut(s)	64, 193, 377
Fnu4HI	GCNGC	1 cut(s)	215
Fsp4HI	GCNGC	1 cut(s)	215
GluI	GCNGC	1 cut(s)	215
HaeIII	GGCC	3 cut(s)	6, 326, 359
HapII	CCGG	2 cut(s)	104, 360
Hin1II	CATG	3 cut(s)	68, 197, 381
HpaII	CCGG	2 cut(s)	104, 360
HphI	GGTGA	1 cut(s)	218
Hpy188III	TCNNGA	1 cut(s)	159
Hpy99I	CGWCG	1 cut(s)	249
HpyAV	CCTTC	1 cut(s)	24
HpyCH4IV	ACGT	1 cut(s)	292
HpyCH4V	TGCA	2 cut(s)	197, 377
HpyF3I	CTNAG	2 cut(s)	186, 371
HpySE526I	ACGT	1 cut(s)	292
Hsp92II	CATG	3 cut(s)	68, 197, 381
LpnPI	CCDG	7 cut(s)	20, 32, 59, 117, 161, 188, 373
Lsp1109I	GCAGC	1 cut(s)	226
MaeII	ACGT	1 cut(s)	292
MaeIII	GTNAC	1 cut(s)	362
MboII	GAAGA	5 cut(s)	123, 147, 182, 252, 300
MluCI	AATT	1 cut(s)	298
MnlI	CCTC	4 cut(s)	67, 196, 265, 316
Mph1103I	ATGCAT	1 cut(s)	199
MseI	TTAA	1 cut(s)	385
MspI	CCGG	2 cut(s)	104, 360
MspR9I	CCNGG	5 cut(s)	8, 47, 104, 105, 176
MvaI	CCWGG	3 cut(s)	8, 47, 176
NciI	CCSGG	2 cut(s)	104, 105
NlaIII	CATG	3 cut(s)	68, 197, 381
NlaIV	GGNNCC	2 cut(s)	12, 51
NsiI	ATGCAT	1 cut(s)	199
NspI	RCATGY	1 cut(s)	381
PkrI	GCNGC	1 cut(s)	216
PpuMI	RGGWCCY	1 cut(s)	50
Psp5II	RGGWCCY	1 cut(s)	50
Psp6I	CCWGG	3 cut(s)	6, 45, 174
PspGI	CCWGG	3 cut(s)	6, 45, 174
PspN4I	GGNNCC	2 cut(s)	12, 51
PspPI	GGNCC	2 cut(s)	4, 50
PspPPI	RGGWCCY	1 cut(s)	50
RsaI	GTAC	1 cut(s)	69
RsaNI	GTAC	1 cut(s)	68
SaqAI	TTAA	1 cut(s)	385
SatI	GCNGC	1 cut(s)	215
Sau96I	GGNCC	2 cut(s)	4, 50
ScrFI	CCNGG	5 cut(s)	8, 47, 104, 105, 176
SetI	ASST	5 cut(s)	12, 37, 55, 192, 295
SinI	GGWCC	1 cut(s)	50
SmaI	CCCGGG	1 cut(s)	105
Sse9I	AATT	1 cut(s)	298
StyD4I	CCNGG	5 cut(s)	6, 45, 102, 103, 174
TaiI	ACGT	1 cut(s)	295
TasI	AATT	1 cut(s)	298
TatI	WGTACW	1 cut(s)	67
Tru1I	TTAA	1 cut(s)	385
Tru9I	TTAA	1 cut(s)	385
TseI	GCWGC	1 cut(s)	214
TspDTI	ATGAA	4 cut(s)	6, 53, 182, 183
TspMI	CCCGGG	1 cut(s)	103
VpaK11BI	GGWCC	1 cut(s)	50
XceI	RCATGY	1 cut(s)	381
XmaI	CCCGGG	1 cut(s)	103
Zsp2I	ATGCAT	1 cut(s)	199

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.