Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6A

Orthogroup ID

OG0002689

Physical Location & Seq

Genomic Coordinates Reverse (-)

19841399 .. 19859728

Gene Structure 18330 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6AG131600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 819 bp

ATGCTACATGAGTGGACTCAAAAAATACTTAAGATCAACCACCGTGGAGGGAAGCAGCAAAGGAGAATATATTGGTTACTGAAGGTCAAGATTATTATGGGCCAGGTTCCTTCATCACGCTCTCACACACCTGATGATGACCAGGGACCTAACCGTATTCATGTACAAGAGGCAGAAATGCAGAGTAGAAATAATCCCCAGGGAGATACGAGACAATCAATGAGTTCTTCACAATTTGTTTTATCACACTCTTCCCCACCCAACGAAGACCAGGGACACGCTCAGCTTCATGCATTGGAGGCTGAAAGGCAGCAAAAAACTTTCAATCCATTCAATAATTCTGGCAAGAGCAGAGATGGGTCTGGATTTGATCGACTCGTCGTCTCTCCCTCCGCCACCAAACCAGACGAATCGACCGAAAACGGCACCGTTTCAGCGCCTGAGGATGCCAAAGCTACGACGGACAAGGACTATCCGAGCGGCGAGTTTCAGTTTCAGGAGGCGAGCCTGTGGAAGAGCTCCGAATGCTCTTTGCTTATCCTTGGGAGCAGGTCAAGAAGGGGAGCGTGTCTTGACCATGACATTGTGCGGCCAGGGAAGTTTGACCTTGGAAAACTACCCTTCAGGCCAGAGGAAGCTGAACTCTTTGCTAAGTCTGCACAGAATTCATATAAGCAATTTTGGGACAAGGCAGCTTCTTCCAGATCAATGACTTTGGCTGGAATGAAAAAGAACGCAACTGAACATGAGAAGAGACGTAAGAATGCCCAGCAGAAGTTGTTGCTTTTTGCCATTCTTGAAGCCACCAATTCTACTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Peptidase_S49

Protein Analysis

272

Amino Acids

30.59

Weight (kDa)

9.26

Isoelectric Point (pI)

58.99

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002689)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g12080 FvH4_3g27050 FvH4_4g08921 FvH4_5g28372
rosa_chinensis	RchiOBHm_Chr1g0349481 RchiOBHm_Chr1g0374471 RchiOBHm_Chr5g0079741
rosa_laevigata	RLG00000017976
rosa_roxburghii	Rroxscaffold_3G00244850
rosa_rugosa	Rorug04G0258600
rosa_samantha	Rh1AG409300 Rh1AG410000 Rh1AG410700 Rh1BG371600 Rh1CG384300 Rh1CG385300 Rh1DG401200 Rh1DG402300 Rh2AG244300 Rh2AG246200 Rh2AG314700 Rh2AG497800 Rh2BG107600 Rh2CG109400 Rh2CG333100 Rh2CG483800 Rh2DG253100 Rh2DG254400 Rh2DG403900 Rh2DG603400 Rh4AG011800 Rh4DG085100 Rh4DG137800 Rh5AG127700 Rh5AG128200 Rh5BG534800 Rh6AG131600 Rh6BG257800 Rh7BG020500 Rh7CG030700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	540
AccB1I	GGYRCC	1 cut(s)	425
AccBSI	CCGCTC	1 cut(s)	480
AciI	CCGC	3 cut(s)	393, 480, 589
AcoI	YGGCCR	1 cut(s)	590
AcsI	RAATTY	1 cut(s)	664
AcuI	CTGAAG	2 cut(s)	101, 607
AfaI	GTAC	1 cut(s)	165
AflII	CTTAAG	1 cut(s)	29
AgsI	TTSAA	3 cut(s)	325, 334, 800
AhdI	GACNNNNNGTC	1 cut(s)	380
AjnI	CCWGG	5 cut(s)	102, 141, 198, 270, 592
AluBI	AGCT	5 cut(s)	286, 455, 519, 638, 695
AluI	AGCT	5 cut(s)	286, 455, 519, 638, 695
Alw21I	GWGCWC	1 cut(s)	521
Alw26I	GTCTC	3 cut(s)	205, 388, 748
AlwNI	CAGNNNCTG	1 cut(s)	440
AoxI	GGCC	3 cut(s)	100, 590, 626
ApeKI	GCWGC	3 cut(s)	55, 310, 692
ApoI	RAATTY	1 cut(s)	664
AspLEI	GCGC	1 cut(s)	439
AspS9I	GGNCC	2 cut(s)	100, 146
AvaII	GGWCC	1 cut(s)	146
AxyI	CCTNAGG	1 cut(s)	441
BanI	GGYRCC	1 cut(s)	425
BanII	GRGCYC	1 cut(s)	521
BbsI	GAAGAC	1 cut(s)	273
Bbv12I	GWGCWC	1 cut(s)	521
BbvI	GCAGC	3 cut(s)	67, 322, 704
BccI	CCATC	1 cut(s)	350
BceAI	ACGGC	1 cut(s)	439
BciT130I	CCWGG	5 cut(s)	104, 143, 200, 272, 594
BcoDI	GTCTC	3 cut(s)	205, 388, 748
BfoI	RGCGCY	1 cut(s)	440
BfrI	CTTAAG	1 cut(s)	29
BfuAI	ACCTGC	1 cut(s)	540
BisI	GCNGC	5 cut(s)	56, 311, 481, 590, 693
BlpI	GCTNAGC	1 cut(s)	282
BlsI	GCNGC	5 cut(s)	57, 312, 482, 591, 694
Bme1390I	CCNGG	5 cut(s)	104, 143, 200, 272, 594
Bme18I	GGWCC	1 cut(s)	146
BmeRI	GACNNNNNGTC	1 cut(s)	380
BmgT120I	GGNCC	2 cut(s)	100, 146
BmiI	GGNNCC	3 cut(s)	108, 147, 427
BmrFI	CCNGG	5 cut(s)	104, 143, 200, 272, 594
BmsI	GCATC	1 cut(s)	436
BpiI	GAAGAC	1 cut(s)	273
Bpu1102I	GCTNAGC	1 cut(s)	282
BsaJI	CCNNGG	8 cut(s)	43, 142, 198, 199, 271, 541, 593, 607
Bse21I	CCTNAGG	1 cut(s)	441
BseBI	CCWGG	5 cut(s)	104, 143, 200, 272, 594
BseDI	CCNNGG	8 cut(s)	43, 142, 198, 199, 271, 541, 593, 607
BseGI	GGATG	1 cut(s)	451
BseMII	CTCAG	2 cut(s)	296, 432
BseXI	GCAGC	3 cut(s)	67, 322, 704
BseYI	CCCAGC	1 cut(s)	768
BsgI	GTGCAG	1 cut(s)	642
Bsh1285I	CGRYCG	1 cut(s)	417
BshFI	GGCC	3 cut(s)	102, 592, 628
BshNI	GGYRCC	1 cut(s)	425
BsiEI	CGRYCG	1 cut(s)	417
BsiHKAI	GWGCWC	1 cut(s)	521
BslFI	GGGAC	3 cut(s)	159, 288, 698
BsmAI	GTCTC	3 cut(s)	205, 388, 748
BsmBI	CGTCTC	2 cut(s)	388, 748
BsmFI	GGGAC	3 cut(s)	159, 288, 698
BsmI	GAATGC	2 cut(s)	530, 769
BsnI	GGCC	3 cut(s)	102, 592, 628
Bsp1286I	GDGCHC	1 cut(s)	521
Bsp1407I	TGTACA	1 cut(s)	163
Bsp143I	GATC	3 cut(s)	33, 370, 704
Bsp1720I	GCTNAGC	1 cut(s)	282
BspACI	CCGC	3 cut(s)	393, 480, 589
BspANI	GGCC	3 cut(s)	102, 592, 628
BspCNI	CTCAG	2 cut(s)	295, 433
BspLI	GGNNCC	3 cut(s)	108, 147, 427
BspMI	ACCTGC	1 cut(s)	540
BspQI	GCTCTTC	1 cut(s)	509
BspT107I	GGYRCC	1 cut(s)	425
BspTI	CTTAAG	1 cut(s)	29
BsrBI	CCGCTC	1 cut(s)	480
BsrGI	TGTACA	1 cut(s)	163
BssECI	CCNNGG	8 cut(s)	43, 142, 198, 199, 271, 541, 593, 607
BssMI	GATC	3 cut(s)	33, 370, 704
BssT1I	CCWWGG	2 cut(s)	541, 607
Bst2UI	CCWGG	5 cut(s)	104, 143, 200, 272, 594
Bst4CI	ACNGT	3 cut(s)	44, 155, 430
Bst6I	CTCTTC	3 cut(s)	256, 509, 746
BstAFI	CTTAAG	1 cut(s)	29
BstAUI	TGTACA	1 cut(s)	163
BstC8I	GCNNGC	1 cut(s)	505
BstDEI	CTNAG	3 cut(s)	282, 441, 651
BstDSI	CCRYGG	1 cut(s)	43
BstF5I	GGATG	1 cut(s)	451
BstH2I	RGCGCY	1 cut(s)	440
BstHHI	GCGC	1 cut(s)	439
BstKTI	GATC	3 cut(s)	36, 373, 707
BstMAI	GTCTC	3 cut(s)	205, 388, 748
BstMBI	GATC	3 cut(s)	33, 370, 704
BstMCI	CGRYCG	1 cut(s)	417
BstMWI	GCNNNNNNNGC	3 cut(s)	299, 525, 656
BstNI	CCWGG	5 cut(s)	104, 143, 200, 272, 594
BstSCI	CCNGG	5 cut(s)	102, 141, 198, 270, 592
BstV1I	GCAGC	3 cut(s)	67, 322, 704
BstV2I	GAAGAC	1 cut(s)	273
Bsu36I	CCTNAGG	1 cut(s)	441
BsuRI	GGCC	3 cut(s)	102, 592, 628
BtgI	CCRYGG	1 cut(s)	43
BtsCI	GGATG	1 cut(s)	451
BveI	ACCTGC	1 cut(s)	540
Cac8I	GCNNGC	1 cut(s)	505
CaiI	CAGNNNCTG	1 cut(s)	440
CfoI	GCGC	1 cut(s)	439
Cfr13I	GGNCC	2 cut(s)	100, 146
Csp6I	GTAC	1 cut(s)	164
CspCI	CAANNNNNGTGG	2 cut(s)	25, 60
CviAII	CATG	5 cut(s)	8, 161, 290, 578, 746
CviQI	GTAC	1 cut(s)	164
DdeI	CTNAG	3 cut(s)	282, 441, 651
DpnI	GATC	3 cut(s)	35, 372, 706
DpnII	GATC	3 cut(s)	33, 370, 704
DriI	GACNNNNNGTC	1 cut(s)	380
EaeI	YGGCCR	1 cut(s)	590
Eam1104I	CTCTTC	3 cut(s)	256, 509, 746
Eam1105I	GACNNNNNGTC	1 cut(s)	380
EarI	CTCTTC	3 cut(s)	256, 509, 746
EciI	GGCGGA	1 cut(s)	382
Ecl136II	GAGCTC	1 cut(s)	519
Eco130I	CCWWGG	2 cut(s)	541, 607
Eco24I	GRGCYC	1 cut(s)	521
Eco47I	GGWCC	1 cut(s)	146
Eco53kI	GAGCTC	1 cut(s)	519
Eco57I	CTGAAG	2 cut(s)	101, 607
Eco81I	CCTNAGG	1 cut(s)	441
EcoICRI	GAGCTC	1 cut(s)	519
EcoO109I	RGGNCCY	1 cut(s)	146
EcoRI	GAATTC	1 cut(s)	664
EcoRII	CCWGG	5 cut(s)	102, 141, 198, 270, 592
EcoT14I	CCWWGG	2 cut(s)	541, 607
EcoT22I	ATGCAT	1 cut(s)	295
EcoT38I	GRGCYC	1 cut(s)	521
ErhI	CCWWGG	2 cut(s)	541, 607
Esp3I	CGTCTC	2 cut(s)	388, 748
FaeI	CATG	5 cut(s)	11, 164, 293, 581, 749
FaiI	YATR	9 cut(s)	9, 70, 98, 162, 291, 579, 670, 672, 747
FaqI	GGGAC	3 cut(s)	159, 288, 698
FatI	CATG	5 cut(s)	7, 160, 289, 577, 745
Fnu4HI	GCNGC	5 cut(s)	56, 311, 481, 590, 693
FokI	GGATG	1 cut(s)	458
FriOI	GRGCYC	1 cut(s)	521
Fsp4HI	GCNGC	5 cut(s)	56, 311, 481, 590, 693
GlaI	GCGC	1 cut(s)	438
GluI	GCNGC	5 cut(s)	56, 311, 481, 590, 693
GsaI	CCCAGC	1 cut(s)	772
HaeII	RGCGCY	1 cut(s)	440
HaeIII	GGCC	3 cut(s)	102, 592, 628
HhaI	GCGC	1 cut(s)	439
Hin1II	CATG	5 cut(s)	11, 164, 293, 581, 749
Hin6I	GCGC	1 cut(s)	437
HinP1I	GCGC	1 cut(s)	437
HinfI	GANTC	3 cut(s)	16, 375, 410
Hpy166II	GTNNAC	1 cut(s)	15
Hpy188I	TCNGA	2 cut(s)	477, 523
Hpy188III	TCNNGA	7 cut(s)	88, 363, 497, 555, 572, 702, 797
Hpy8I	GTNNAC	1 cut(s)	15
Hpy99I	CGWCG	2 cut(s)	383, 463
HpyAV	CCTTC	4 cut(s)	76, 120, 552, 631
HpyCH4III	ACNGT	3 cut(s)	44, 155, 430
HpyCH4IV	ACGT	1 cut(s)	757
HpyCH4V	TGCA	3 cut(s)	181, 293, 659
HpyF10VI	GCNNNNNNNGC	3 cut(s)	299, 525, 656
HpyF3I	CTNAG	3 cut(s)	282, 441, 651
HpySE526I	ACGT	1 cut(s)	757
Hsp92II	CATG	5 cut(s)	11, 164, 293, 581, 749
HspAI	GCGC	1 cut(s)	437
Kzo9I	GATC	3 cut(s)	33, 370, 704
LguI	GCTCTTC	1 cut(s)	509
LmnI	GCTCC	3 cut(s)	524, 546, 563
Lsp1109I	GCAGC	3 cut(s)	67, 322, 704
LweI	GCATC	1 cut(s)	436
MaeII	ACGT	1 cut(s)	757
MaeIII	GTNAC	1 cut(s)	75
MalI	GATC	3 cut(s)	35, 372, 706
MbiI	CCGCTC	1 cut(s)	480
MboI	GATC	3 cut(s)	33, 370, 704
MboII	GAAGA	6 cut(s)	219, 243, 278, 526, 690, 763
MhlI	GDGCHC	1 cut(s)	521
MluCI	AATT	5 cut(s)	233, 337, 664, 677, 808
MlyI	GAGTC	2 cut(s)	10, 369
MnlI	CCTC	7 cut(s)	41, 163, 292, 400, 436, 493, 625
Mph1103I	ATGCAT	1 cut(s)	295
MseI	TTAA	2 cut(s)	30, 817
MspCI	CTTAAG	1 cut(s)	29
MspR9I	CCNGG	5 cut(s)	104, 143, 200, 272, 594
Mva1269I	GAATGC	2 cut(s)	530, 769
MvaI	CCWGG	5 cut(s)	104, 143, 200, 272, 594
MwoI	GCNNNNNNNGC	3 cut(s)	299, 525, 656
NdeII	GATC	3 cut(s)	33, 370, 704
NlaIII	CATG	5 cut(s)	11, 164, 293, 581, 749
NlaIV	GGNNCC	3 cut(s)	108, 147, 427
NsiI	ATGCAT	1 cut(s)	295
PasI	CCCWGGG	1 cut(s)	199
PciSI	GCTCTTC	1 cut(s)	509
PcsI	WCGNNNNNNNCGW	1 cut(s)	414
PctI	GAATGC	2 cut(s)	530, 769
PfeI	GAWTC	1 cut(s)	410
PkrI	GCNGC	5 cut(s)	57, 312, 482, 591, 694
PleI	GAGTC	2 cut(s)	10, 369
PpsI	GAGTC	2 cut(s)	10, 369
PpuMI	RGGWCCY	1 cut(s)	146
Psp124BI	GAGCTC	1 cut(s)	521
Psp5II	RGGWCCY	1 cut(s)	146
Psp6I	CCWGG	5 cut(s)	102, 141, 198, 270, 592
PspFI	CCCAGC	1 cut(s)	768
PspGI	CCWGG	5 cut(s)	102, 141, 198, 270, 592
PspN4I	GGNNCC	3 cut(s)	108, 147, 427
PspPI	GGNCC	2 cut(s)	100, 146
PspPPI	RGGWCCY	1 cut(s)	146
PstNI	CAGNNNCTG	1 cut(s)	440
RsaI	GTAC	1 cut(s)	165
RsaNI	GTAC	1 cut(s)	164
SacI	GAGCTC	1 cut(s)	521
SapI	GCTCTTC	1 cut(s)	509
SaqAI	TTAA	2 cut(s)	30, 817
SatI	GCNGC	5 cut(s)	56, 311, 481, 590, 693
Sau3AI	GATC	3 cut(s)	33, 370, 704
Sau96I	GGNCC	2 cut(s)	100, 146
SchI	GAGTC	2 cut(s)	10, 369
ScrFI	CCNGG	5 cut(s)	104, 143, 200, 272, 594
SduI	GDGCHC	1 cut(s)	521
SfaNI	GCATC	1 cut(s)	436
SinI	GGWCC	1 cut(s)	146
SmlI	CTYRAG	1 cut(s)	29
SmoI	CTYRAG	1 cut(s)	29
Sse9I	AATT	5 cut(s)	233, 337, 664, 677, 808
SsiI	CCGC	3 cut(s)	393, 480, 589
SstI	GAGCTC	1 cut(s)	521
StyD4I	CCNGG	5 cut(s)	102, 141, 198, 270, 592
StyI	CCWWGG	2 cut(s)	541, 607
TaaI	ACNGT	3 cut(s)	44, 155, 430
TaiI	ACGT	1 cut(s)	760
TaqI	TCGA	2 cut(s)	373, 413
TaqII	GACCGA	1 cut(s)	431
TasI	AATT	5 cut(s)	233, 337, 664, 677, 808
TatI	WGTACW	1 cut(s)	163
TauI	GCSGC	2 cut(s)	483, 592
TfiI	GAWTC	1 cut(s)	410
Tru1I	TTAA	2 cut(s)	30, 817
Tru9I	TTAA	2 cut(s)	30, 817
TseI	GCWGC	3 cut(s)	55, 310, 692
TspDTI	ATGAA	5 cut(s)	102, 149, 278, 657, 740
TspGWI	ACGGA	1 cut(s)	476
Vha464I	CTTAAG	1 cut(s)	29
VpaK11BI	GGWCC	1 cut(s)	146
XapI	RAATTY	1 cut(s)	664
Zsp2I	ATGCAT	1 cut(s)	295

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.