Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7B

Orthogroup ID

OG0002689

Physical Location & Seq

Genomic Coordinates Reverse (-)

1424475 .. 1426612

Gene Structure 2138 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7BG020500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 723 bp

ATGCAAGAAGTCGCTCACTTCTTCAGAACAGAGCCAAGAGTGAGTGGAATCATGTTCAATAACTTTTTCCTTCGGTTTGCTCAGTTGTTCTTCTTCTACTTAAAAGGGATAGTGGGCCGAGAAGTGACCGTGGAGCTCAAGAACGACCTTGCGATTAGGGGTACTCTTCACTCTGTCAATCAGTGTGCCTCAATTCTCTCTGCTAATTTACTCTTTCTTACGTGCCAGTGTGATAAGGTCAAGATTATTATGGGCCAGGTTCCTTCATCACGCTCTCACACACCTGATGACGACCAGGGAACTAACCGTATTCATGTACAAGAGGCAGAAAGGCAGAGTAGAAATAATCCCCTGGAAGAGACGAGACAATCAATGAGTTCTTCACAATCTGTTTTATCACACTCTTCCCGACCCAACGAAGACCGGGGACACGCTCAGCTTCATGCATTGGAGGCTGAAAGGCAGCGTAGAAATAATCGTCAAAGAGAGAGACGACGATTATTGAGTTCTTCGCAACAAGAGGAAAGTTTAGCCCGAAGACGTGCCAATTATCAAAGACAACAGCAAATAGAGGCCACAAGTGTATCAAATCAAGTGGAAGCAATGGCCGGTAACTTACTGAGTGCATGTTCTGAAACACAAACATCTTCAACGTATTGTATACGTGTTTTGCACAATTTTCTTTCTACTTTCATGAACAAAAATATTATTCTATATATGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000375 GO:0000377 GO:0000398 GO:0000932 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005681 GO:0005688 GO:0005737 GO:0005829 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008380 GO:0009987 GO:0010467 GO:0016070 GO:0016071 GO:0030532 GO:0032991 GO:0034641 GO:0035770 GO:0036464 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0046540 GO:0071011 GO:0071013 GO:0071704 GO:0090304 GO:0097525 GO:0097526 GO:0120114 GO:1901360 GO:1902494 GO:1990726 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03018 ko03040 map03018 map03040

Pfam Domains

Protein Families

LSM

Protein Analysis

240

Amino Acids

27.62

Weight (kDa)

9.49

Isoelectric Point (pI)

62.43

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002689)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g12080 FvH4_3g27050 FvH4_4g08921 FvH4_5g28372
rosa_chinensis	RchiOBHm_Chr1g0349481 RchiOBHm_Chr1g0374471 RchiOBHm_Chr5g0079741
rosa_laevigata	RLG00000017976
rosa_roxburghii	Rroxscaffold_3G00244850
rosa_rugosa	Rorug04G0258600
rosa_samantha	Rh1AG409300 Rh1AG410000 Rh1AG410700 Rh1BG371600 Rh1CG384300 Rh1CG385300 Rh1DG401200 Rh1DG402300 Rh2AG244300 Rh2AG246200 Rh2AG314700 Rh2AG497800 Rh2BG107600 Rh2CG109400 Rh2CG333100 Rh2CG483800 Rh2DG253100 Rh2DG254400 Rh2DG403900 Rh2DG603400 Rh4AG011800 Rh4DG085100 Rh4DG137800 Rh5AG127700 Rh5AG128200 Rh5BG534800 Rh6AG131600 Rh6BG257800 Rh7BG020500 Rh7CG030700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	661
AcoI	YGGCCR	1 cut(s)	606
AcuI	CTGAAG	1 cut(s)	7
AfaI	GTAC	2 cut(s)	163, 318
AflIII	ACRYGT	1 cut(s)	664
AgsI	TTSAA	2 cut(s)	58, 651
AjiI	CACGTC	1 cut(s)	542
AjnI	CCWGG	3 cut(s)	255, 294, 351
AluBI	AGCT	2 cut(s)	136, 439
AluI	AGCT	2 cut(s)	136, 439
Alw21I	GWGCWC	1 cut(s)	138
Alw26I	GTCTC	3 cut(s)	353, 358, 484
AoxI	GGCC	4 cut(s)	115, 253, 573, 606
ApeKI	GCWGC	1 cut(s)	463
AspS9I	GGNCC	2 cut(s)	115, 253
AsuC2I	CCSGG	1 cut(s)	425
BaeI	ACNNNNGTAYC	2 cut(s)	567, 600
BanII	GRGCYC	1 cut(s)	138
BbsI	GAAGAC	2 cut(s)	426, 544
Bbv12I	GWGCWC	1 cut(s)	138
BbvI	GCAGC	1 cut(s)	475
BciT130I	CCWGG	3 cut(s)	257, 296, 353
BcnI	CCSGG	1 cut(s)	425
BcoDI	GTCTC	3 cut(s)	353, 358, 484
BisI	GCNGC	1 cut(s)	464
BlpI	GCTNAGC	1 cut(s)	435
BlsI	GCNGC	1 cut(s)	465
Bme1390I	CCNGG	4 cut(s)	257, 296, 353, 425
BmgBI	CACGTC	1 cut(s)	542
BmgT120I	GGNCC	2 cut(s)	115, 253
BmiI	GGNNCC	1 cut(s)	261
BmrFI	CCNGG	4 cut(s)	257, 296, 353, 425
BpiI	GAAGAC	2 cut(s)	426, 544
Bpu1102I	GCTNAGC	1 cut(s)	435
BpuEI	CTTGAG	1 cut(s)	122
BpuMI	CCSGG	1 cut(s)	425
BsaAI	YACGTR	2 cut(s)	222, 665
BsaJI	CCNNGG	4 cut(s)	129, 295, 351, 424
Bse118I	RCCGGY	1 cut(s)	608
Bse1I	ACTGG	1 cut(s)	226
Bse3DI	GCAATG	1 cut(s)	609
BseBI	CCWGG	3 cut(s)	257, 296, 353
BseDI	CCNNGG	4 cut(s)	129, 295, 351, 424
BseMI	GCAATG	1 cut(s)	609
BseMII	CTCAG	3 cut(s)	95, 449, 611
BseNI	ACTGG	1 cut(s)	226
BseXI	GCAGC	1 cut(s)	475
BshFI	GGCC	4 cut(s)	117, 255, 575, 608
BsiHKAI	GWGCWC	1 cut(s)	138
BsiSI	CCGG	2 cut(s)	424, 609
BslFI	GGGAC	1 cut(s)	441
BsmAI	GTCTC	3 cut(s)	353, 358, 484
BsmBI	CGTCTC	2 cut(s)	353, 484
BsmFI	GGGAC	1 cut(s)	441
BsnI	GGCC	4 cut(s)	117, 255, 575, 608
Bsp1286I	GDGCHC	1 cut(s)	138
Bsp1407I	TGTACA	1 cut(s)	316
Bsp1720I	GCTNAGC	1 cut(s)	435
BspANI	GGCC	4 cut(s)	117, 255, 575, 608
BspCNI	CTCAG	3 cut(s)	94, 448, 612
BspHI	TCATGA	1 cut(s)	693
BspLI	GGNNCC	1 cut(s)	261
BsrDI	GCAATG	1 cut(s)	609
BsrFI	RCCGGY	1 cut(s)	608
BsrGI	TGTACA	1 cut(s)	316
BsrI	ACTGG	1 cut(s)	226
BssAI	RCCGGY	1 cut(s)	608
BssECI	CCNNGG	4 cut(s)	129, 295, 351, 424
BssNAI	GTATAC	1 cut(s)	662
Bst1107I	GTATAC	1 cut(s)	662
Bst2UI	CCWGG	3 cut(s)	257, 296, 353
Bst4CI	ACNGT	2 cut(s)	130, 308
Bst6I	CTCTTC	3 cut(s)	171, 351, 409
BstAUI	TGTACA	1 cut(s)	316
BstBAI	YACGTR	2 cut(s)	222, 665
BstDEI	CTNAG	3 cut(s)	81, 435, 620
BstDSI	CCRYGG	1 cut(s)	129
BstMAI	GTCTC	3 cut(s)	353, 358, 484
BstMWI	GCNNNNNNNGC	1 cut(s)	452
BstNI	CCWGG	3 cut(s)	257, 296, 353
BstNSI	RCATGY	1 cut(s)	630
BstSCI	CCNGG	4 cut(s)	255, 294, 351, 423
BstV1I	GCAGC	1 cut(s)	475
BstV2I	GAAGAC	2 cut(s)	426, 544
BstZ17I	GTATAC	1 cut(s)	662
BsuRI	GGCC	4 cut(s)	117, 255, 575, 608
BtgI	CCRYGG	1 cut(s)	129
BtrI	CACGTC	1 cut(s)	542
BtsIMutI	CAGTG	2 cut(s)	188, 233
CciI	TCATGA	1 cut(s)	693
Cfr10I	RCCGGY	1 cut(s)	608
Cfr13I	GGNCC	2 cut(s)	115, 253
Csp6I	GTAC	2 cut(s)	162, 317
CspCI	CAANNNNNGTGG	2 cut(s)	576, 611
CviAII	CATG	5 cut(s)	52, 314, 443, 627, 694
CviJI	RGCY	9 cut(s)	34, 117, 136, 255, 439, 455, 533, 575, 608
CviKI_1	RGCY	9 cut(s)	34, 117, 136, 255, 439, 455, 533, 575, 608
CviQI	GTAC	2 cut(s)	162, 317
DdeI	CTNAG	3 cut(s)	81, 435, 620
EaeI	YGGCCR	1 cut(s)	606
Eam1104I	CTCTTC	3 cut(s)	171, 351, 409
EarI	CTCTTC	3 cut(s)	171, 351, 409
Ecl136II	GAGCTC	1 cut(s)	136
Eco24I	GRGCYC	1 cut(s)	138
Eco53kI	GAGCTC	1 cut(s)	136
Eco57I	CTGAAG	1 cut(s)	7
EcoICRI	GAGCTC	1 cut(s)	136
EcoRII	CCWGG	3 cut(s)	255, 294, 351
EcoT22I	ATGCAT	1 cut(s)	448
EcoT38I	GRGCYC	1 cut(s)	138
Esp3I	CGTCTC	2 cut(s)	353, 484
FaeI	CATG	5 cut(s)	55, 317, 446, 630, 697
FaqI	GGGAC	1 cut(s)	441
FatI	CATG	5 cut(s)	51, 313, 442, 626, 693
FblI	GTMKAC	1 cut(s)	661
Fnu4HI	GCNGC	1 cut(s)	464
FriOI	GRGCYC	1 cut(s)	138
Fsp4HI	GCNGC	1 cut(s)	464
GluI	GCNGC	1 cut(s)	464
HaeIII	GGCC	4 cut(s)	117, 255, 575, 608
HapII	CCGG	2 cut(s)	424, 609
Hin1II	CATG	5 cut(s)	55, 317, 446, 630, 697
HinfI	GANTC	1 cut(s)	48
HpaII	CCGG	2 cut(s)	424, 609
Hpy166II	GTNNAC	1 cut(s)	662
Hpy188I	TCNGA	2 cut(s)	26, 634
Hpy188III	TCNNGA	4 cut(s)	139, 241, 408, 694
Hpy8I	GTNNAC	1 cut(s)	662
Hpy99I	CGWCG	1 cut(s)	498
HpyAV	CCTTC	2 cut(s)	80, 273
HpyCH4III	ACNGT	2 cut(s)	130, 308
HpyCH4IV	ACGT	4 cut(s)	221, 541, 653, 664
HpyCH4V	TGCA	4 cut(s)	4, 446, 626, 673
HpyF10VI	GCNNNNNNNGC	1 cut(s)	452
HpyF3I	CTNAG	3 cut(s)	81, 435, 620
HpySE526I	ACGT	4 cut(s)	221, 541, 653, 664
Hsp92II	CATG	5 cut(s)	55, 317, 446, 630, 697
LmnI	GCTCC	1 cut(s)	133
Lsp1109I	GCAGC	1 cut(s)	475
MaeII	ACGT	4 cut(s)	221, 541, 653, 664
MaeIII	GTNAC	2 cut(s)	124, 611
MhlI	GDGCHC	1 cut(s)	138
MluCI	AATT	4 cut(s)	192, 205, 547, 676
MnlI	CCTC	5 cut(s)	199, 316, 445, 514, 565
Mph1103I	ATGCAT	1 cut(s)	448
MseI	TTAA	1 cut(s)	101
MspI	CCGG	2 cut(s)	424, 609
MspR9I	CCNGG	4 cut(s)	257, 296, 353, 425
MvaI	CCWGG	3 cut(s)	257, 296, 353
MwoI	GCNNNNNNNGC	1 cut(s)	452
NciI	CCSGG	1 cut(s)	425
NlaIII	CATG	5 cut(s)	55, 317, 446, 630, 697
NlaIV	GGNNCC	1 cut(s)	261
NmeAIII	GCCGAG	1 cut(s)	143
NmuCI	GTSAC	1 cut(s)	124
NsiI	ATGCAT	1 cut(s)	448
NspI	RCATGY	1 cut(s)	630
PagI	TCATGA	1 cut(s)	693
PfeI	GAWTC	1 cut(s)	48
PkrI	GCNGC	1 cut(s)	465
Ppu21I	YACGTR	2 cut(s)	222, 665
Psp124BI	GAGCTC	1 cut(s)	138
Psp6I	CCWGG	3 cut(s)	255, 294, 351
PspGI	CCWGG	3 cut(s)	255, 294, 351
PspN4I	GGNNCC	1 cut(s)	261
PspPI	GGNCC	2 cut(s)	115, 253
RsaI	GTAC	2 cut(s)	163, 318
RsaNI	GTAC	2 cut(s)	162, 317
SacI	GAGCTC	1 cut(s)	138
SaqAI	TTAA	1 cut(s)	101
SatI	GCNGC	1 cut(s)	464
Sau96I	GGNCC	2 cut(s)	115, 253
ScrFI	CCNGG	4 cut(s)	257, 296, 353, 425
SduI	GDGCHC	1 cut(s)	138
SmlI	CTYRAG	1 cut(s)	137
SmoI	CTYRAG	1 cut(s)	137
Sse9I	AATT	4 cut(s)	192, 205, 547, 676
SspI	AATATT	1 cut(s)	706
SstI	GAGCTC	1 cut(s)	138
StyD4I	CCNGG	4 cut(s)	255, 294, 351, 423
TaaI	ACNGT	2 cut(s)	130, 308
TaiI	ACGT	4 cut(s)	224, 544, 656, 667
TasI	AATT	4 cut(s)	192, 205, 547, 676
TatI	WGTACW	1 cut(s)	316
TfiI	GAWTC	1 cut(s)	48
Tru1I	TTAA	1 cut(s)	101
Tru9I	TTAA	1 cut(s)	101
TscAI	CASTG	2 cut(s)	188, 233
TseFI	GTSAC	1 cut(s)	124
TseI	GCWGC	1 cut(s)	463
Tsp45I	GTSAC	1 cut(s)	124
TspDTI	ATGAA	5 cut(s)	255, 302, 431, 682, 710
TspRI	CASTG	2 cut(s)	188, 233
XceI	RCATGY	1 cut(s)	630
XmiI	GTMKAC	1 cut(s)	661
Zsp2I	ATGCAT	1 cut(s)	448

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.