Rh2CG333100

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2C
OG0002689
Physical Location & Seq
Reverse (-)
43856510 .. 43857246
737 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2CG333100.1

Sequence Viewer

Length: 534 bp
ATGGTTAGTAATCAGGTTGATTTAGTTGGCTTTCATCCTTTACAGATTATTATGGGCCAGGTTCCTTCATCACGCTTTCACACACCTGCTGAAGACCAGGGACCTAAGTCACCTAACCGTCTTCAAGCACAAGAGGCAGAAAGGCAAAGTATAAATATTCCCCATGGAGAGACGAGACAATCAATGAGTCTTGCGCAATCTCTTACATCACACTATTACCCACCCAATGAAGACCAGGGTTACACCCATCTTCATGCATTAGAGGCTGAAAGGCAGCGTAGAAATAATCGTCAAAGAGAGAGGCGACAGTTATTGAGTTCTTCACAACGAGCGGAAATTTTAGCCCAAAGACATGCCAACTATCAGATACAACAACAAATGGAGAACACAAGTGTAACAAATCAAGTGGAAGCAATGAACGGTAACTTACTGAGTGCATGTTCCGAAACACAAACATCTTCAACGTATTGTATATATTTTTTTCACAATTTTCTTTCTAATTTGATCAACAAAAATATTCTTTTGCATATGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

177

Amino Acids

20.35

Weight (kDa)

7.14

Isoelectric Point (pI)

63.82

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 94
Acc16I TGCGCA 1 cut(s) 195
Acc36I ACCTGC 1 cut(s) 94
AccBSI CCGCTC 1 cut(s) 332
AciI CCGC 1 cut(s) 332
AcsI RAATTY 1 cut(s) 336
AcuI CTGAAG 1 cut(s) 111
AgsI TTSAA 2 cut(s) 125, 462
AjnI CCWGG 3 cut(s) 57, 96, 234
Alw26I GTCTC 2 cut(s) 164, 169
AoxI GGCC 1 cut(s) 55
ApeKI GCWGC 1 cut(s) 274
ApoI RAATTY 1 cut(s) 336
AspLEI GCGC 1 cut(s) 196
AspS9I GGNCC 2 cut(s) 55, 101
AsuHPI GGTGA 1 cut(s) 102
AvaII GGWCC 1 cut(s) 101
BbsI GAAGAC 3 cut(s) 99, 113, 237
BbvI GCAGC 1 cut(s) 286
BccI CCATC 1 cut(s) 255
BciT130I CCWGG 3 cut(s) 59, 98, 236
BclI TGATCA 1 cut(s) 504
BcoDI GTCTC 2 cut(s) 164, 169
BfuAI ACCTGC 1 cut(s) 94
BisI GCNGC 1 cut(s) 275
BlsI GCNGC 1 cut(s) 276
Bme1390I CCNGG 3 cut(s) 59, 98, 236
Bme18I GGWCC 1 cut(s) 101
BmgT120I GGNCC 2 cut(s) 55, 101
BmiI GGNNCC 2 cut(s) 63, 102
BmrFI CCNGG 3 cut(s) 59, 98, 236
BoxI GACNNNNGTC 1 cut(s) 106
BpiI GAAGAC 3 cut(s) 99, 113, 237
BsaJI CCNNGG 3 cut(s) 97, 163, 235
Bse3DI GCAATG 1 cut(s) 420
BseBI CCWGG 3 cut(s) 59, 98, 236
BseDI CCNNGG 3 cut(s) 97, 163, 235
BseGI GGATG 1 cut(s) 34
BseMI GCAATG 1 cut(s) 420
BseMII CTCAG 1 cut(s) 422
BseXI GCAGC 1 cut(s) 286
BshFI GGCC 1 cut(s) 57
BslFI GGGAC 1 cut(s) 114
BsmAI GTCTC 2 cut(s) 164, 169
BsmBI CGTCTC 1 cut(s) 164
BsmFI GGGAC 1 cut(s) 114
BsnI GGCC 1 cut(s) 57
Bsp143I GATC 1 cut(s) 504
Bsp19I CCATGG 1 cut(s) 163
BspACI CCGC 1 cut(s) 332
BspANI GGCC 1 cut(s) 57
BspCNI CTCAG 1 cut(s) 423
BspLI GGNNCC 2 cut(s) 63, 102
BspMI ACCTGC 1 cut(s) 94
BsrBI CCGCTC 1 cut(s) 332
BsrDI GCAATG 1 cut(s) 420
BssECI CCNNGG 3 cut(s) 97, 163, 235
BssMI GATC 1 cut(s) 504
BssT1I CCWWGG 1 cut(s) 163
Bst2UI CCWGG 3 cut(s) 59, 98, 236
Bst4CI ACNGT 3 cut(s) 119, 309, 422
BstDEI CTNAG 2 cut(s) 105, 431
BstDSI CCRYGG 1 cut(s) 163
BstF5I GGATG 1 cut(s) 34
BstHHI GCGC 1 cut(s) 196
BstKTI GATC 1 cut(s) 507
BstMAI GTCTC 2 cut(s) 164, 169
BstMBI GATC 1 cut(s) 504
BstMWI GCNNNNNNNGC 2 cut(s) 134, 263
BstNI CCWGG 3 cut(s) 59, 98, 236
BstNSI RCATGY 2 cut(s) 356, 441
BstPAI GACNNNNGTC 1 cut(s) 106
BstSCI CCNGG 3 cut(s) 57, 96, 234
BstV1I GCAGC 1 cut(s) 286
BstV2I GAAGAC 3 cut(s) 99, 113, 237
BsuRI GGCC 1 cut(s) 57
BtgI CCRYGG 1 cut(s) 163
BtsCI GGATG 1 cut(s) 34
BveI ACCTGC 1 cut(s) 94
CfoI GCGC 1 cut(s) 196
Cfr13I GGNCC 2 cut(s) 55, 101
CspCI CAANNNNNGTGG 2 cut(s) 387, 422
CviAII CATG 4 cut(s) 164, 254, 353, 438
CviJI RGCY 4 cut(s) 30, 57, 266, 344
CviKI_1 RGCY 4 cut(s) 30, 57, 266, 344
DdeI CTNAG 2 cut(s) 105, 431
DpnI GATC 1 cut(s) 506
DpnII GATC 1 cut(s) 504
Eco130I CCWWGG 1 cut(s) 163
Eco47I GGWCC 1 cut(s) 101
Eco57I CTGAAG 1 cut(s) 111
EcoO109I RGGNCCY 1 cut(s) 101
EcoRII CCWGG 3 cut(s) 57, 96, 234
EcoT14I CCWWGG 1 cut(s) 163
EcoT22I ATGCAT 1 cut(s) 259
ErhI CCWWGG 1 cut(s) 163
Esp3I CGTCTC 1 cut(s) 164
FaeI CATG 4 cut(s) 167, 257, 356, 441
FaqI GGGAC 1 cut(s) 114
FatI CATG 4 cut(s) 163, 253, 352, 437
FauNDI CATATG 1 cut(s) 528
FbaI TGATCA 1 cut(s) 504
Fnu4HI GCNGC 1 cut(s) 275
FokI GGATG 1 cut(s) 21
Fsp4HI GCNGC 1 cut(s) 275
FspI TGCGCA 1 cut(s) 195
GlaI GCGC 1 cut(s) 195
GluI GCNGC 1 cut(s) 275
HaeIII GGCC 1 cut(s) 57
HhaI GCGC 1 cut(s) 196
Hin1II CATG 4 cut(s) 167, 257, 356, 441
Hin6I GCGC 1 cut(s) 194
HinP1I GCGC 1 cut(s) 194
HinfI GANTC 1 cut(s) 187
HphI GGTGA 1 cut(s) 102
Hpy188I TCNGA 2 cut(s) 366, 445
HpyAV CCTTC 1 cut(s) 75
HpyCH4III ACNGT 3 cut(s) 119, 309, 422
HpyCH4IV ACGT 1 cut(s) 464
HpyCH4V TGCA 3 cut(s) 257, 437, 526
HpyF10VI GCNNNNNNNGC 2 cut(s) 134, 263
HpyF3I CTNAG 2 cut(s) 105, 431
HpySE526I ACGT 1 cut(s) 464
Hsp92II CATG 4 cut(s) 167, 257, 356, 441
HspAI GCGC 1 cut(s) 194
Ksp22I TGATCA 1 cut(s) 504
Kzo9I GATC 1 cut(s) 504
LpnPI CCDG 7 cut(s) 44, 71, 83, 99, 110, 221, 248
Lsp1109I GCAGC 1 cut(s) 286
MaeII ACGT 1 cut(s) 464
MaeIII GTNAC 4 cut(s) 108, 239, 394, 422
MalI GATC 1 cut(s) 506
MbiI CCGCTC 1 cut(s) 332
MboI GATC 1 cut(s) 504
MboII GAAGA 6 cut(s) 104, 113, 242, 242, 312, 450
MluCI AATT 3 cut(s) 336, 487, 499
MlyI GAGTC 1 cut(s) 196
MnlI CCTC 3 cut(s) 127, 256, 294
Mph1103I ATGCAT 1 cut(s) 259
MslI CAYNNNNRTG 1 cut(s) 252
MspR9I CCNGG 3 cut(s) 59, 98, 236
MvaI CCWGG 3 cut(s) 59, 98, 236
MwoI GCNNNNNNNGC 2 cut(s) 134, 263
NcoI CCATGG 1 cut(s) 163
NdeI CATATG 1 cut(s) 528
NdeII GATC 1 cut(s) 504
NlaIII CATG 4 cut(s) 167, 257, 356, 441
NlaIV GGNNCC 2 cut(s) 63, 102
NmuCI GTSAC 1 cut(s) 108
NsbI TGCGCA 1 cut(s) 195
NsiI ATGCAT 1 cut(s) 259
NspI RCATGY 2 cut(s) 356, 441
PaqCI CACCTGC 1 cut(s) 94
PkrI GCNGC 1 cut(s) 276
PleI GAGTC 1 cut(s) 195
PpsI GAGTC 1 cut(s) 195
PpuMI RGGWCCY 1 cut(s) 101
PshAI GACNNNNGTC 1 cut(s) 106
Psp5II RGGWCCY 1 cut(s) 101
Psp6I CCWGG 3 cut(s) 57, 96, 234
PspGI CCWGG 3 cut(s) 57, 96, 234
PspN4I GGNNCC 2 cut(s) 63, 102
PspPI GGNCC 2 cut(s) 55, 101
PspPPI RGGWCCY 1 cut(s) 101
RseI CAYNNNNRTG 1 cut(s) 252
SatI GCNGC 1 cut(s) 275
Sau3AI GATC 1 cut(s) 504
Sau96I GGNCC 2 cut(s) 55, 101
SchI GAGTC 1 cut(s) 196
ScrFI CCNGG 3 cut(s) 59, 98, 236
SetI ASST 6 cut(s) 18, 63, 88, 106, 115, 467
SinI GGWCC 1 cut(s) 101
SmiMI CAYNNNNRTG 1 cut(s) 252
Sse9I AATT 3 cut(s) 336, 487, 499
SsiI CCGC 1 cut(s) 332
SspI AATATT 2 cut(s) 157, 517
StyD4I CCNGG 3 cut(s) 57, 96, 234
StyI CCWWGG 1 cut(s) 163
TaaI ACNGT 3 cut(s) 119, 309, 422
TaiI ACGT 1 cut(s) 467
TasI AATT 3 cut(s) 336, 487, 499
TseFI GTSAC 1 cut(s) 108
TseI GCWGC 1 cut(s) 274
Tsp45I GTSAC 1 cut(s) 108
TspDTI ATGAA 5 cut(s) 23, 57, 242, 243, 431
VpaK11BI GGWCC 1 cut(s) 101
XapI RAATTY 1 cut(s) 336
XceI RCATGY 2 cut(s) 356, 441
Zsp2I ATGCAT 1 cut(s) 259
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.