Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1A

Orthogroup ID

OG0002689

Physical Location & Seq

Genomic Coordinates Reverse (-)

64057631 .. 64073196

Gene Structure 15566 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1AG410000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 840 bp

ATGAATTGCTTCAATGAGGTTCCAAACCATCAATGTGGGTCGCTCGATTTGATTGAAGACGAAACGGGATTTGTTCAAGTACCTGTAAAGTATTTGATTGGACTTGAAAGGAAAAGCGCAAGACCAGTCTTCTTGGGGCTCCTGACTTCTATACCATTCAAAGGCCGACAAGGTTGGAAAAAGCTTCATTTTTTTATCACTGCTCTGAACAAGACAGCAAGCTTCAAGGACGCTATAAACACAGACATGCCAAAATACTGCAACCATCAAGTAATGATGCGGCCTCAAATTGTTATGGGACAAGTTTCTTCATCATGCCCTCAGCCATCGAATGATGGCCAGGAACCATCCCGTGTTCATGCACCCAATGCAGAAAGGCAAAGTACAAATACTTCTGAAGGAGAGAGGAGACAATCAGTGAGTTCTTCAGAAGCTATTTTATCGCAGTCTCACCCACTGGATGAAGATCAGAATATTAAAAAGCAAGGTGCTGATCGTTATGATGGTATTATCAAGGAAGTGCTATGTCAAAAATATGGTATTTCAAACGTAGTTTCAAAGGCAAAGGAATTTGAGGGGCTTTTGGACAATACCAAATATGGTGATACTTACCATAGTCTAGTTGGTATTGCAAAAGTGTTTTTCCATCACTTTACATATTTGGGCCAAAATCTGAGCATGGAAGAAATATATGGATACTTGTATCAAACACTAGAAGATATTGTGATTGTTCTAAACCCTGACGTATTGGGATCACAGGATGTTGAAGTATGTGGCAGAGGAGAGCAAAAAAGAAAATGCGGACCAAGTTTAACAATATGCAATGAAGAGAGAGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

279

Amino Acids

31.36

Weight (kDa)

5.94

Isoelectric Point (pI)

40.93

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002689)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g12080 FvH4_3g27050 FvH4_4g08921 FvH4_5g28372
rosa_chinensis	RchiOBHm_Chr1g0349481 RchiOBHm_Chr1g0374471 RchiOBHm_Chr5g0079741
rosa_laevigata	RLG00000017976
rosa_roxburghii	Rroxscaffold_3G00244850
rosa_rugosa	Rorug04G0258600
rosa_samantha	Rh1AG409300 Rh1AG410000 Rh1AG410700 Rh1BG371600 Rh1CG384300 Rh1CG385300 Rh1DG401200 Rh1DG402300 Rh2AG244300 Rh2AG246200 Rh2AG314700 Rh2AG497800 Rh2BG107600 Rh2CG109400 Rh2CG333100 Rh2CG483800 Rh2DG253100 Rh2DG254400 Rh2DG403900 Rh2DG603400 Rh4AG011800 Rh4DG085100 Rh4DG137800 Rh5AG127700 Rh5AG128200 Rh5BG534800 Rh6AG131600 Rh6BG257800 Rh7BG020500 Rh7CG030700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	280, 801
AclWI	GGATC	1 cut(s)	760
AcoI	YGGCCR	1 cut(s)	337
AcsI	RAATTY	1 cut(s)	569
AcuI	CTGAAG	2 cut(s)	411, 417
AfaI	GTAC	2 cut(s)	81, 385
AfiI	CCNNNNNNNGG	1 cut(s)	161
AgsI	TTSAA	9 cut(s)	13, 56, 77, 107, 160, 226, 546, 558, 767
AjnI	CCWGG	1 cut(s)	339
AluBI	AGCT	3 cut(s)	184, 222, 434
AluI	AGCT	3 cut(s)	184, 222, 434
Alw26I	GTCTC	2 cut(s)	403, 453
AlwI	GGATC	1 cut(s)	760
AoxI	GGCC	4 cut(s)	163, 281, 337, 664
ApoI	RAATTY	1 cut(s)	569
Asp700I	GAANNNNTTC	1 cut(s)	8
AspLEI	GCGC	1 cut(s)	119
AspS9I	GGNCC	2 cut(s)	664, 803
AsuHPI	GGTGA	2 cut(s)	443, 614
AvaII	GGWCC	1 cut(s)	803
BalI	TGGCCA	1 cut(s)	339
BanII	GRGCYC	1 cut(s)	141
BarI	GAAGNNNNNNTAC	2 cut(s)	376, 408
BbsI	GAAGAC	2 cut(s)	63, 121
BbvCI	CCTCAGC	1 cut(s)	321
BccI	CCATC	7 cut(s)	36, 273, 329, 334, 355, 497, 654
BciT130I	CCWGG	1 cut(s)	341
BciVI	GTATCC	1 cut(s)	689
BcoDI	GTCTC	2 cut(s)	403, 453
BfaI	CTAG	2 cut(s)	620, 713
BfuI	GTATCC	1 cut(s)	689
BisI	GCNGC	1 cut(s)	281
BlsI	GCNGC	1 cut(s)	282
Bme1390I	CCNGG	1 cut(s)	341
Bme18I	GGWCC	1 cut(s)	803
BmgT120I	GGNCC	2 cut(s)	664, 803
BmiI	GGNNCC	3 cut(s)	21, 140, 345
BmrFI	CCNGG	1 cut(s)	341
BmsI	GCATC	1 cut(s)	267
BpiI	GAAGAC	2 cut(s)	63, 121
Bpu10I	CCTNAGC	1 cut(s)	321
BsaBI	GATNNNNATC	1 cut(s)	465
Bsc4I	CCNNNNNNNGG	1 cut(s)	161
Bse1I	ACTGG	2 cut(s)	125, 462
Bse3DI	GCAATG	1 cut(s)	829
Bse8I	GATNNNNATC	1 cut(s)	465
BseBI	CCWGG	1 cut(s)	341
BseGI	GGATG	3 cut(s)	347, 466, 766
BseJI	GATNNNNATC	1 cut(s)	465
BseLI	CCNNNNNNNGG	1 cut(s)	161
BseMI	GCAATG	1 cut(s)	829
BseMII	CTCAG	2 cut(s)	335, 665
BseNI	ACTGG	2 cut(s)	125, 462
BseRI	GAGGAG	2 cut(s)	421, 795
BshFI	GGCC	4 cut(s)	165, 283, 339, 666
BslFI	GGGAC	1 cut(s)	312
BslI	CCNNNNNNNGG	1 cut(s)	161
BsmAI	GTCTC	2 cut(s)	403, 453
BsmFI	GGGAC	1 cut(s)	312
BsnI	GGCC	4 cut(s)	165, 283, 339, 666
Bsp1286I	GDGCHC	1 cut(s)	141
Bsp143I	GATC	3 cut(s)	466, 493, 752
BspACI	CCGC	2 cut(s)	280, 801
BspANI	GGCC	4 cut(s)	165, 283, 339, 666
BspCNI	CTCAG	2 cut(s)	334, 666
BspLI	GGNNCC	3 cut(s)	21, 140, 345
BspPI	GGATC	1 cut(s)	760
BsrDI	GCAATG	1 cut(s)	829
BsrI	ACTGG	2 cut(s)	125, 462
BssMI	GATC	3 cut(s)	466, 493, 752
Bst2UI	CCWGG	1 cut(s)	341
Bst6I	CTCTTC	1 cut(s)	822
BstAPI	GCANNNNNTGC	1 cut(s)	368
BstC8I	GCNNGC	1 cut(s)	220
BstDEI	CTNAG	2 cut(s)	321, 674
BstF5I	GGATG	3 cut(s)	347, 466, 766
BstHHI	GCGC	1 cut(s)	119
BstKTI	GATC	3 cut(s)	469, 496, 755
BstMAI	GTCTC	2 cut(s)	403, 453
BstMBI	GATC	3 cut(s)	466, 493, 752
BstMWI	GCNNNNNNNGC	1 cut(s)	368
BstNI	CCWGG	1 cut(s)	341
BstNSI	RCATGY	1 cut(s)	250
BstSCI	CCNGG	1 cut(s)	339
BstV2I	GAAGAC	2 cut(s)	63, 121
BstXI	CCANNNNNNTGG	1 cut(s)	35
BsuI	GTATCC	1 cut(s)	689
BsuRI	GGCC	4 cut(s)	165, 283, 339, 666
BtsCI	GGATG	3 cut(s)	347, 466, 766
BtsI	GCAGTG	1 cut(s)	198
BtsIMutI	CAGTG	3 cut(s)	198, 423, 455
Cac8I	GCNNGC	1 cut(s)	220
CfoI	GCGC	1 cut(s)	119
Cfr13I	GGNCC	2 cut(s)	664, 803
CseI	GACGC	1 cut(s)	239
Csp6I	GTAC	2 cut(s)	80, 384
CviAII	CATG	4 cut(s)	247, 315, 359, 679
CviQI	GTAC	2 cut(s)	80, 384
DdeI	CTNAG	2 cut(s)	321, 674
DpnI	GATC	3 cut(s)	468, 495, 754
DpnII	GATC	3 cut(s)	466, 493, 752
EaeI	YGGCCR	1 cut(s)	337
Eam1104I	CTCTTC	1 cut(s)	822
EarI	CTCTTC	1 cut(s)	822
Eco24I	GRGCYC	1 cut(s)	141
Eco47I	GGWCC	1 cut(s)	803
Eco57I	CTGAAG	2 cut(s)	411, 417
EcoRII	CCWGG	1 cut(s)	339
EcoT38I	GRGCYC	1 cut(s)	141
FaeI	CATG	4 cut(s)	250, 318, 362, 682
FaqI	GGGAC	1 cut(s)	312
FatI	CATG	4 cut(s)	246, 314, 358, 678
Fnu4HI	GCNGC	1 cut(s)	281
FokI	GGATG	3 cut(s)	334, 473, 773
FriOI	GRGCYC	1 cut(s)	141
Fsp4HI	GCNGC	1 cut(s)	281
FspBI	CTAG	2 cut(s)	620, 713
GlaI	GCGC	1 cut(s)	118
GluI	GCNGC	1 cut(s)	281
HaeIII	GGCC	4 cut(s)	165, 283, 339, 666
HgaI	GACGC	1 cut(s)	239
HhaI	GCGC	1 cut(s)	119
Hin1II	CATG	4 cut(s)	250, 318, 362, 682
Hin6I	GCGC	1 cut(s)	117
HinP1I	GCGC	1 cut(s)	117
HindIII	AAGCTT	2 cut(s)	182, 220
HphI	GGTGA	2 cut(s)	443, 614
Hpy188I	TCNGA	5 cut(s)	207, 397, 430, 471, 675
Hpy188III	TCNNGA	1 cut(s)	142
HpyAV	CCTTC	1 cut(s)	392
HpyCH4IV	ACGT	2 cut(s)	549, 744
HpyCH4V	TGCA	5 cut(s)	261, 362, 371, 632, 822
HpyF10VI	GCNNNNNNNGC	1 cut(s)	368
HpyF3I	CTNAG	2 cut(s)	321, 674
HpySE526I	ACGT	2 cut(s)	549, 744
Hsp92II	CATG	4 cut(s)	250, 318, 362, 682
HspAI	GCGC	1 cut(s)	117
Kzo9I	GATC	3 cut(s)	466, 493, 752
LmnI	GCTCC	1 cut(s)	144
LpnPI	CCDG	8 cut(s)	96, 138, 155, 326, 353, 443, 743, 753
LweI	GCATC	1 cut(s)	267
MaeI	CTAG	2 cut(s)	620, 713
MaeII	ACGT	2 cut(s)	549, 744
MalI	GATC	3 cut(s)	468, 495, 754
MboI	GATC	3 cut(s)	466, 493, 752
MboII	GAAGA	8 cut(s)	68, 121, 300, 417, 476, 695, 728, 839
MhlI	GDGCHC	1 cut(s)	141
MlsI	TGGCCA	1 cut(s)	339
MluCI	AATT	3 cut(s)	4, 288, 569
MluNI	TGGCCA	1 cut(s)	339
MmeI	TCCRAC	1 cut(s)	155
MnlI	CCTC	6 cut(s)	10, 294, 330, 399, 568, 773
Mox20I	TGGCCA	1 cut(s)	339
MroXI	GAANNNNTTC	1 cut(s)	8
MscI	TGGCCA	1 cut(s)	339
MseI	TTAA	2 cut(s)	477, 812
MslI	CAYNNNNRTG	2 cut(s)	33, 245
Msp20I	TGGCCA	1 cut(s)	339
MspR9I	CCNGG	1 cut(s)	341
MvaI	CCWGG	1 cut(s)	341
MwoI	GCNNNNNNNGC	1 cut(s)	368
NdeII	GATC	3 cut(s)	466, 493, 752
NlaIII	CATG	4 cut(s)	250, 318, 362, 682
NlaIV	GGNNCC	3 cut(s)	21, 140, 345
NspI	RCATGY	1 cut(s)	250
PdmI	GAANNNNTTC	1 cut(s)	8
PkrI	GCNGC	1 cut(s)	282
Psp6I	CCWGG	1 cut(s)	339
PspGI	CCWGG	1 cut(s)	339
PspN4I	GGNNCC	3 cut(s)	21, 140, 345
PspPI	GGNCC	2 cut(s)	664, 803
RsaI	GTAC	2 cut(s)	81, 385
RsaNI	GTAC	2 cut(s)	80, 384
RseI	CAYNNNNRTG	2 cut(s)	33, 245
SaqAI	TTAA	2 cut(s)	477, 812
SatI	GCNGC	1 cut(s)	281
Sau3AI	GATC	3 cut(s)	466, 493, 752
Sau96I	GGNCC	2 cut(s)	664, 803
ScrFI	CCNGG	1 cut(s)	341
SduI	GDGCHC	1 cut(s)	141
SetI	ASST	9 cut(s)	21, 85, 175, 186, 224, 436, 490, 552, 747
SfaNI	GCATC	1 cut(s)	267
SinI	GGWCC	1 cut(s)	803
SmiMI	CAYNNNNRTG	2 cut(s)	33, 245
Sse9I	AATT	3 cut(s)	4, 288, 569
SsiI	CCGC	2 cut(s)	280, 801
SspI	AATATT	1 cut(s)	475
SspMI	CTAG	2 cut(s)	620, 713
StyD4I	CCNGG	1 cut(s)	339
TaiI	ACGT	2 cut(s)	552, 747
TaqI	TCGA	2 cut(s)	45, 329
TasI	AATT	3 cut(s)	4, 288, 569
TatI	WGTACW	1 cut(s)	383
TauI	GCSGC	1 cut(s)	283
Tru1I	TTAA	2 cut(s)	477, 812
Tru9I	TTAA	2 cut(s)	477, 812
TscAI	CASTG	3 cut(s)	205, 423, 462
TspDTI	ATGAA	6 cut(s)	17, 176, 300, 347, 477, 840
TspRI	CASTG	3 cut(s)	205, 423, 462
VpaK11BI	GGWCC	1 cut(s)	803
XapI	RAATTY	1 cut(s)	569
XceI	RCATGY	1 cut(s)	250
XcmI	CCANNNNNNNNNTGG	1 cut(s)	620
XmnI	GAANNNNTTC	1 cut(s)	8
XspI	CTAG	2 cut(s)	620, 713

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.