Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1D

Orthogroup ID

OG0002689

Physical Location & Seq

Genomic Coordinates Forward (+)

62206965 .. 62212583

Gene Structure 5619 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1DG402300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 915 bp

ATGTCTGGTCCTCCAGGTTATGATTATGACAAGTATCCAGATTATGAGGATAGGCAAATGGGTTGGCATTTTCCTTTGAGTGAAGAAATCAACAAATTGCCAGATATCTCTGCCTTAAAGTTGGAGACTCCAACTGGATCCAGTAGCATAAGAAATAAAGGGAAAGAAAAAGCAGAGTCTTCAAAGACTCTAGTGAGAGAGATCATCAAAAAAATAAATCCGAAATGGACTCCAATCAACCGACCTCATTTGCAGATCCAGAAAATTATGCGGGATATTGTTATCGACCTTGCTATTCAAGGTAAAGAAAAGGGTAACTTCACTATTGAAGATGTTTACATGTCTAATGGTGTGGCCAAAGTTGCTGTGCATTTATCAAACAAAATCCTCAATAACTCATTGCTTAGAGTTGCGAAGATTTTCTTCCGTGACAAGGATGTGACGACATGTTCGGAGTTGGATACCTTTTATAAGGCTATCATGAGATGCATGACTGACAACGACTTTAAGCAGTTATACTTCCAGCCTCTCTTGTATTCAGAAAGTGAGACGATGTATTTTCTGCTTGATATCTTACTAGTGGCTGATCATATCAAGAATGGTAAAAATCAACATTTTGATGGTGATGATGGTATTATCAAGCAAGTGCTATATAAAAAATATAGTATTTCAAAAGTAGTTTCAAAGGCAAAGAAATTTGAGGGGCTTTTGGATAAAACCAAATATGGCAATTCTTACCATAGTCTAGTTGGTATTGCAAGAGTGTTTTTCCATCACTTTACATGTTTGGGCCAAAATCTGAGCATGGAAGAAATATATGGATACCTGTATCAAGTATCTCCAGACATGCATTTGAGTGTGTTCGAATTGCTCTCAGATGCAGATTTTGATTTTTCCAGCTTCTGTAGACACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001101 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003697 GO:0003723 GO:0003729 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005829 GO:0005886 GO:0006950 GO:0006996 GO:0007275 GO:0008150 GO:0009266 GO:0009269 GO:0009409 GO:0009414 GO:0009415 GO:0009628 GO:0009631 GO:0009719 GO:0009725 GO:0009737 GO:0009790 GO:0009791 GO:0009793 GO:0009908 GO:0009987 GO:0010033 GO:0010035 GO:0010154 GO:0010228 GO:0016020 GO:0016043 GO:0019222 GO:0022414 GO:0031323 GO:0031974 GO:0031981 GO:0032392 GO:0032501 GO:0032502 GO:0032508 GO:0033993 GO:0042221 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043457 GO:0043467 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0048316 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048608 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051276 GO:0061458 GO:0065007 GO:0070013 GO:0071103 GO:0071840 GO:0071944 GO:0090567 GO:0097159 GO:0097305 GO:0099402 GO:1901363 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CSD zf-CCHC

Protein Analysis

304

Amino Acids

35.09

Weight (kDa)

7.67

Isoelectric Point (pI)

35.06

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002689)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g12080 FvH4_3g27050 FvH4_4g08921 FvH4_5g28372
rosa_chinensis	RchiOBHm_Chr1g0349481 RchiOBHm_Chr1g0374471 RchiOBHm_Chr5g0079741
rosa_laevigata	RLG00000017976
rosa_roxburghii	Rroxscaffold_3G00244850
rosa_rugosa	Rorug04G0258600
rosa_samantha	Rh1AG409300 Rh1AG410000 Rh1AG410700 Rh1BG371600 Rh1CG384300 Rh1CG385300 Rh1DG401200 Rh1DG402300 Rh2AG244300 Rh2AG246200 Rh2AG314700 Rh2AG497800 Rh2BG107600 Rh2CG109400 Rh2CG333100 Rh2CG483800 Rh2DG253100 Rh2DG254400 Rh2DG403900 Rh2DG603400 Rh4AG011800 Rh4DG085100 Rh4DG137800 Rh5AG127700 Rh5AG128200 Rh5BG534800 Rh6AG131600 Rh6BG257800 Rh7BG020500 Rh7CG030700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	471
AccI	GTMKAC	1 cut(s)	907
AciI	CCGC	1 cut(s)	271
AclWI	GGATC	3 cut(s)	132, 145, 250
AcoI	YGGCCR	1 cut(s)	354
AcsI	RAATTY	1 cut(s)	695
AfiI	CCNNNNNNNGG	1 cut(s)	433
AflIII	ACRYGT	3 cut(s)	339, 446, 782
AgsI	TTSAA	5 cut(s)	183, 299, 329, 672, 684
AhlI	ACTAGT	1 cut(s)	577
AjnI	CCWGG	1 cut(s)	13
AluBI	AGCT	1 cut(s)	900
AluI	AGCT	1 cut(s)	900
Alw26I	GTCTC	2 cut(s)	119, 542
AlwI	GGATC	3 cut(s)	132, 145, 250
AlwNI	CAGNNNCTG	1 cut(s)	903
AoxI	GGCC	2 cut(s)	354, 790
ApoI	RAATTY	1 cut(s)	695
ArsI	GACNNNNNNTTYG	2 cut(s)	433, 465
Asp700I	GAANNNNTTC	1 cut(s)	419
AspS9I	GGNCC	2 cut(s)	8, 790
AsuHPI	GGTGA	1 cut(s)	635
AsuII	TTCGAA	1 cut(s)	864
AvaII	GGWCC	1 cut(s)	8
BalI	TGGCCA	1 cut(s)	356
BamHI	GGATCC	1 cut(s)	137
BbsI	GAAGAC	1 cut(s)	171
BccI	CCATC	3 cut(s)	614, 623, 780
BciT130I	CCWGG	1 cut(s)	15
BciVI	GTATCC	3 cut(s)	45, 454, 815
BclI	TGATCA	1 cut(s)	586
BcoDI	GTCTC	2 cut(s)	119, 542
BcuI	ACTAGT	1 cut(s)	577
BfaI	CTAG	4 cut(s)	191, 578, 746, 913
BfmI	CTRYAG	1 cut(s)	904
BfuI	GTATCC	3 cut(s)	45, 454, 815
Bme1390I	CCNGG	1 cut(s)	15
Bme18I	GGWCC	1 cut(s)	8
BmgT120I	GGNCC	2 cut(s)	8, 790
BmiI	GGNNCC	1 cut(s)	139
BmrFI	CCNGG	1 cut(s)	15
BmsI	GCATC	2 cut(s)	476, 868
BpiI	GAAGAC	1 cut(s)	171
BpmI	CTGGAG	1 cut(s)	825
Bpu14I	TTCGAA	1 cut(s)	864
Bsc4I	CCNNNNNNNGG	1 cut(s)	433
Bse1I	ACTGG	2 cut(s)	139, 141
Bse3DI	GCAATG	1 cut(s)	398
BseBI	CCWGG	1 cut(s)	15
BseGI	GGATG	1 cut(s)	442
BseLI	CCNNNNNNNGG	1 cut(s)	433
BseMI	GCAATG	1 cut(s)	398
BseMII	CTCAG	2 cut(s)	791, 888
BseNI	ACTGG	2 cut(s)	139, 141
BshFI	GGCC	2 cut(s)	356, 792
BslI	CCNNNNNNNGG	1 cut(s)	433
BsmAI	GTCTC	2 cut(s)	119, 542
BsmBI	CGTCTC	1 cut(s)	542
BsnI	GGCC	2 cut(s)	356, 792
Bsp119I	TTCGAA	1 cut(s)	864
Bsp143I	GATC	4 cut(s)	137, 201, 255, 586
BspACI	CCGC	1 cut(s)	271
BspANI	GGCC	2 cut(s)	356, 792
BspCNI	CTCAG	2 cut(s)	792, 887
BspHI	TCATGA	1 cut(s)	480
BspLI	GGNNCC	1 cut(s)	139
BspPI	GGATC	3 cut(s)	132, 145, 250
BspT104I	TTCGAA	1 cut(s)	864
BsrDI	GCAATG	1 cut(s)	398
BsrI	ACTGG	2 cut(s)	139, 141
BssMI	GATC	4 cut(s)	137, 201, 255, 586
Bst2UI	CCWGG	1 cut(s)	15
BstBI	TTCGAA	1 cut(s)	864
BstDEI	CTNAG	3 cut(s)	404, 800, 874
BstF5I	GGATG	1 cut(s)	442
BstKTI	GATC	4 cut(s)	140, 204, 258, 589
BstMAI	GTCTC	2 cut(s)	119, 542
BstMBI	GATC	4 cut(s)	137, 201, 255, 586
BstMWI	GCNNNNNNNGC	1 cut(s)	362
BstNI	CCWGG	1 cut(s)	15
BstNSI	RCATGY	4 cut(s)	343, 450, 786, 850
BstSCI	CCNGG	1 cut(s)	13
BstSFI	CTRYAG	1 cut(s)	904
BstV2I	GAAGAC	1 cut(s)	171
BstX2I	RGATCY	2 cut(s)	137, 255
BstYI	RGATCY	2 cut(s)	137, 255
BsuI	GTATCC	3 cut(s)	45, 454, 815
BsuRI	GGCC	2 cut(s)	356, 792
BtsCI	GGATG	1 cut(s)	442
CaiI	CAGNNNCTG	1 cut(s)	903
CciI	TCATGA	1 cut(s)	480
Cfr13I	GGNCC	2 cut(s)	8, 790
CviAII	CATG	7 cut(s)	340, 447, 481, 490, 783, 805, 847
CviJI	RGCY	7 cut(s)	356, 476, 526, 584, 706, 792, 900
CviKI_1	RGCY	7 cut(s)	356, 476, 526, 584, 706, 792, 900
DdeI	CTNAG	3 cut(s)	404, 800, 874
DpnI	GATC	4 cut(s)	139, 203, 257, 588
DpnII	GATC	4 cut(s)	137, 201, 255, 586
EaeI	YGGCCR	1 cut(s)	354
Eco32I	GATATC	2 cut(s)	106, 571
Eco47I	GGWCC	1 cut(s)	8
EcoRII	CCWGG	1 cut(s)	13
EcoRV	GATATC	2 cut(s)	106, 571
EcoT22I	ATGCAT	2 cut(s)	491, 852
Esp3I	CGTCTC	1 cut(s)	542
FaeI	CATG	7 cut(s)	343, 450, 484, 493, 786, 808, 850
FalI	AAGNNNNNCTT	4 cut(s)	302, 334, 407, 439
FatI	CATG	7 cut(s)	339, 446, 480, 489, 782, 804, 846
FauI	CCCGC	1 cut(s)	264
FbaI	TGATCA	1 cut(s)	586
FblI	GTMKAC	1 cut(s)	907
FokI	GGATG	1 cut(s)	449
FspBI	CTAG	4 cut(s)	191, 578, 746, 913
GsuI	CTGGAG	1 cut(s)	825
HaeIII	GGCC	2 cut(s)	356, 792
Hin1II	CATG	7 cut(s)	343, 450, 484, 493, 786, 808, 850
HinfI	GANTC	4 cut(s)	127, 176, 187, 229
HphI	GGTGA	1 cut(s)	635
Hpy166II	GTNNAC	2 cut(s)	337, 908
Hpy188I	TCNGA	5 cut(s)	222, 454, 541, 801, 877
Hpy188III	TCNNGA	5 cut(s)	38, 259, 481, 595, 842
Hpy8I	GTNNAC	2 cut(s)	337, 908
HpyCH4V	TGCA	6 cut(s)	253, 370, 489, 758, 850, 881
HpyF10VI	GCNNNNNNNGC	1 cut(s)	362
HpyF3I	CTNAG	3 cut(s)	404, 800, 874
Hsp92II	CATG	7 cut(s)	343, 450, 484, 493, 786, 808, 850
Ksp22I	TGATCA	1 cut(s)	586
Kzo9I	GATC	4 cut(s)	137, 201, 255, 586
LweI	GCATC	2 cut(s)	476, 868
MaeI	CTAG	4 cut(s)	191, 578, 746, 913
MaeIII	GTNAC	3 cut(s)	314, 428, 439
MalI	GATC	4 cut(s)	139, 203, 257, 588
MboI	GATC	4 cut(s)	137, 201, 255, 586
MboII	GAAGA	6 cut(s)	95, 171, 341, 415, 427, 821
MflI	RGATCY	2 cut(s)	137, 255
MlsI	TGGCCA	1 cut(s)	356
MluCI	AATT	5 cut(s)	95, 264, 695, 730, 866
MluNI	TGGCCA	1 cut(s)	356
MlyI	GAGTC	4 cut(s)	121, 181, 185, 223
MmeI	TCCRAC	3 cut(s)	102, 155, 438
MnlI	CCTC	6 cut(s)	21, 40, 255, 398, 537, 694
Mox20I	TGGCCA	1 cut(s)	356
Mph1103I	ATGCAT	2 cut(s)	491, 852
MroXI	GAANNNNTTC	1 cut(s)	419
MscI	TGGCCA	1 cut(s)	356
MseI	TTAA	2 cut(s)	116, 507
MslI	CAYNNNNRTG	2 cut(s)	618, 855
Msp20I	TGGCCA	1 cut(s)	356
MspR9I	CCNGG	1 cut(s)	15
MvaI	CCWGG	1 cut(s)	15
MwoI	GCNNNNNNNGC	1 cut(s)	362
NdeII	GATC	4 cut(s)	137, 201, 255, 586
NlaIII	CATG	7 cut(s)	343, 450, 484, 493, 786, 808, 850
NlaIV	GGNNCC	1 cut(s)	139
NmuCI	GTSAC	2 cut(s)	428, 439
NsiI	ATGCAT	2 cut(s)	491, 852
NspI	RCATGY	4 cut(s)	343, 450, 786, 850
NspV	TTCGAA	1 cut(s)	864
PagI	TCATGA	1 cut(s)	480
PciI	ACATGT	3 cut(s)	339, 446, 782
PdmI	GAANNNNTTC	1 cut(s)	419
PleI	GAGTC	4 cut(s)	121, 181, 184, 223
PpsI	GAGTC	4 cut(s)	121, 181, 184, 223
PscI	ACATGT	3 cut(s)	339, 446, 782
PsiI	TTATAA	1 cut(s)	471
Psp6I	CCWGG	1 cut(s)	13
PspGI	CCWGG	1 cut(s)	13
PspN4I	GGNNCC	1 cut(s)	139
PspPI	GGNCC	2 cut(s)	8, 790
PstNI	CAGNNNCTG	1 cut(s)	903
PsuI	RGATCY	2 cut(s)	137, 255
RseI	CAYNNNNRTG	2 cut(s)	618, 855
SaqAI	TTAA	2 cut(s)	116, 507
Sau3AI	GATC	4 cut(s)	137, 201, 255, 586
Sau96I	GGNCC	2 cut(s)	8, 790
SchI	GAGTC	4 cut(s)	121, 181, 185, 223
ScrFI	CCNGG	1 cut(s)	15
SetI	ASST	7 cut(s)	19, 247, 291, 304, 467, 828, 902
SfaNI	GCATC	2 cut(s)	476, 868
SfcI	CTRYAG	1 cut(s)	904
SfuI	TTCGAA	1 cut(s)	864
SinI	GGWCC	1 cut(s)	8
SmiMI	CAYNNNNRTG	2 cut(s)	618, 855
SpeI	ACTAGT	1 cut(s)	577
Sse9I	AATT	5 cut(s)	95, 264, 695, 730, 866
SsiI	CCGC	1 cut(s)	271
SspMI	CTAG	4 cut(s)	191, 578, 746, 913
StyD4I	CCNGG	1 cut(s)	13
TaqI	TCGA	2 cut(s)	285, 864
TasI	AATT	5 cut(s)	95, 264, 695, 730, 866
Tru1I	TTAA	2 cut(s)	116, 507
Tru9I	TTAA	2 cut(s)	116, 507
TseFI	GTSAC	2 cut(s)	428, 439
Tsp45I	GTSAC	2 cut(s)	428, 439
TspGWI	ACGGA	1 cut(s)	416
VpaK11BI	GGWCC	1 cut(s)	8
XapI	RAATTY	1 cut(s)	695
XceI	RCATGY	4 cut(s)	343, 450, 786, 850
XcmI	CCANNNNNNNNNTGG	1 cut(s)	746
XmiI	GTMKAC	1 cut(s)	907
XmnI	GAANNNNTTC	1 cut(s)	419
XspI	CTAG	4 cut(s)	191, 578, 746, 913
Zsp2I	ATGCAT	2 cut(s)	491, 852

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.