No description available
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| fragaria_vesca | FvH4_2g12080 FvH4_3g27050 FvH4_4g08921 FvH4_5g28372 |
| rosa_chinensis | RchiOBHm_Chr1g0349481 RchiOBHm_Chr1g0374471 RchiOBHm_Chr5g0079741 |
| rosa_laevigata | RLG00000017976 |
| rosa_roxburghii | Rroxscaffold_3G00244850 |
| rosa_rugosa | Rorug04G0258600 |
| rosa_samantha | Rh1AG409300 Rh1AG410000 Rh1AG410700 Rh1BG371600 Rh1CG384300 Rh1CG385300 Rh1DG401200 Rh1DG402300 Rh2AG244300 Rh2AG246200 Rh2AG314700 Rh2AG497800 Rh2BG107600 Rh2CG109400 Rh2CG333100 Rh2CG483800 Rh2DG253100 Rh2DG254400 Rh2DG403900 Rh2DG603400 Rh4AG011800 Rh4DG085100 Rh4DG137800 Rh5AG127700 Rh5AG128200 Rh5BG534800 Rh6AG131600 Rh6BG257800 Rh7BG020500 Rh7CG030700 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccI | GTMKAC | 1 cut(s) | 412 |
| AcoI | YGGCCR | 1 cut(s) | 357 |
| AfaI | GTAC | 1 cut(s) | 69 |
| AflIII | ACRYGT | 1 cut(s) | 415 |
| AgsI | TTSAA | 1 cut(s) | 402 |
| AjiI | CACGTC | 1 cut(s) | 293 |
| AjnI | CCWGG | 4 cut(s) | 6, 45, 102, 174 |
| AluBI | AGCT | 2 cut(s) | 190, 206 |
| AluI | AGCT | 2 cut(s) | 190, 206 |
| Alw26I | GTCTC | 2 cut(s) | 109, 235 |
| AoxI | GGCC | 3 cut(s) | 4, 324, 357 |
| ApeKI | GCWGC | 1 cut(s) | 214 |
| AspS9I | GGNCC | 2 cut(s) | 4, 50 |
| AvaII | GGWCC | 1 cut(s) | 50 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 318, 351 |
| BbsI | GAAGAC | 1 cut(s) | 177 |
| BbvI | GCAGC | 1 cut(s) | 226 |
| BciT130I | CCWGG | 4 cut(s) | 8, 47, 104, 176 |
| BcoDI | GTCTC | 2 cut(s) | 109, 235 |
| BisI | GCNGC | 1 cut(s) | 215 |
| BlpI | GCTNAGC | 1 cut(s) | 186 |
| BlsI | GCNGC | 1 cut(s) | 216 |
| Bme1390I | CCNGG | 4 cut(s) | 8, 47, 104, 176 |
| Bme18I | GGWCC | 1 cut(s) | 50 |
| BmgBI | CACGTC | 1 cut(s) | 293 |
| BmgT120I | GGNCC | 2 cut(s) | 4, 50 |
| BmiI | GGNNCC | 2 cut(s) | 12, 51 |
| BmrFI | CCNGG | 4 cut(s) | 8, 47, 104, 176 |
| BpiI | GAAGAC | 1 cut(s) | 177 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 186 |
| BsaAI | YACGTR | 1 cut(s) | 416 |
| BsaJI | CCNNGG | 4 cut(s) | 46, 102, 103, 175 |
| Bse118I | RCCGGY | 1 cut(s) | 359 |
| Bse3DI | GCAATG | 1 cut(s) | 360 |
| BseBI | CCWGG | 4 cut(s) | 8, 47, 104, 176 |
| BseDI | CCNNGG | 4 cut(s) | 46, 102, 103, 175 |
| BseMI | GCAATG | 1 cut(s) | 360 |
| BseMII | CTCAG | 2 cut(s) | 200, 362 |
| BseXI | GCAGC | 1 cut(s) | 226 |
| BshFI | GGCC | 3 cut(s) | 6, 326, 359 |
| BsiSI | CCGG | 1 cut(s) | 360 |
| BslFI | GGGAC | 2 cut(s) | 63, 192 |
| BsmAI | GTCTC | 2 cut(s) | 109, 235 |
| BsmBI | CGTCTC | 1 cut(s) | 235 |
| BsmFI | GGGAC | 2 cut(s) | 63, 192 |
| BsnI | GGCC | 3 cut(s) | 6, 326, 359 |
| Bsp1407I | TGTACA | 1 cut(s) | 67 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 186 |
| BspANI | GGCC | 3 cut(s) | 6, 326, 359 |
| BspCNI | CTCAG | 2 cut(s) | 199, 363 |
| BspHI | TCATGA | 1 cut(s) | 444 |
| BspLI | GGNNCC | 2 cut(s) | 12, 51 |
| BsrDI | GCAATG | 1 cut(s) | 360 |
| BsrFI | RCCGGY | 1 cut(s) | 359 |
| BsrGI | TGTACA | 1 cut(s) | 67 |
| BssAI | RCCGGY | 1 cut(s) | 359 |
| BssECI | CCNNGG | 4 cut(s) | 46, 102, 103, 175 |
| BssNAI | GTATAC | 1 cut(s) | 413 |
| Bst1107I | GTATAC | 1 cut(s) | 413 |
| Bst2UI | CCWGG | 4 cut(s) | 8, 47, 104, 176 |
| Bst4CI | ACNGT | 1 cut(s) | 59 |
| Bst6I | CTCTTC | 1 cut(s) | 160 |
| BstAUI | TGTACA | 1 cut(s) | 67 |
| BstBAI | YACGTR | 1 cut(s) | 416 |
| BstDEI | CTNAG | 2 cut(s) | 186, 371 |
| BstMAI | GTCTC | 2 cut(s) | 109, 235 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 203 |
| BstNI | CCWGG | 4 cut(s) | 8, 47, 104, 176 |
| BstNSI | RCATGY | 1 cut(s) | 381 |
| BstSCI | CCNGG | 4 cut(s) | 6, 45, 102, 174 |
| BstV1I | GCAGC | 1 cut(s) | 226 |
| BstV2I | GAAGAC | 1 cut(s) | 177 |
| BstZ17I | GTATAC | 1 cut(s) | 413 |
| BsuRI | GGCC | 3 cut(s) | 6, 326, 359 |
| BtrI | CACGTC | 1 cut(s) | 293 |
| CciI | TCATGA | 1 cut(s) | 444 |
| Cfr10I | RCCGGY | 1 cut(s) | 359 |
| Cfr13I | GGNCC | 2 cut(s) | 4, 50 |
| Csp6I | GTAC | 1 cut(s) | 68 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 327, 362 |
| CviAII | CATG | 4 cut(s) | 65, 194, 378, 445 |
| CviJI | RGCY | 6 cut(s) | 6, 190, 206, 284, 326, 359 |
| CviKI_1 | RGCY | 6 cut(s) | 6, 190, 206, 284, 326, 359 |
| CviQI | GTAC | 1 cut(s) | 68 |
| DdeI | CTNAG | 2 cut(s) | 186, 371 |
| EaeI | YGGCCR | 1 cut(s) | 357 |
| Eam1104I | CTCTTC | 1 cut(s) | 160 |
| EarI | CTCTTC | 1 cut(s) | 160 |
| Eco47I | GGWCC | 1 cut(s) | 50 |
| EcoO109I | RGGNCCY | 1 cut(s) | 50 |
| EcoRII | CCWGG | 4 cut(s) | 6, 45, 102, 174 |
| EcoT22I | ATGCAT | 1 cut(s) | 199 |
| Esp3I | CGTCTC | 1 cut(s) | 235 |
| FaeI | CATG | 4 cut(s) | 68, 197, 381, 448 |
| FaiI | YATR | 8 cut(s) | 66, 195, 379, 413, 446, 466, 468, 470 |
| FaqI | GGGAC | 2 cut(s) | 63, 192 |
| FatI | CATG | 4 cut(s) | 64, 193, 377, 444 |
| FblI | GTMKAC | 1 cut(s) | 412 |
| Fnu4HI | GCNGC | 1 cut(s) | 215 |
| Fsp4HI | GCNGC | 1 cut(s) | 215 |
| GluI | GCNGC | 1 cut(s) | 215 |
| HaeIII | GGCC | 3 cut(s) | 6, 326, 359 |
| HapII | CCGG | 1 cut(s) | 360 |
| Hin1II | CATG | 4 cut(s) | 68, 197, 381, 448 |
| HpaII | CCGG | 1 cut(s) | 360 |
| Hpy166II | GTNNAC | 1 cut(s) | 413 |
| Hpy188I | TCNGA | 1 cut(s) | 385 |
| Hpy188III | TCNNGA | 1 cut(s) | 445 |
| Hpy8I | GTNNAC | 1 cut(s) | 413 |
| Hpy99I | CGWCG | 1 cut(s) | 249 |
| HpyAV | CCTTC | 1 cut(s) | 24 |
| HpyCH4III | ACNGT | 1 cut(s) | 59 |
| HpyCH4IV | ACGT | 3 cut(s) | 292, 404, 415 |
| HpyCH4V | TGCA | 4 cut(s) | 85, 197, 377, 424 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 203 |
| HpyF3I | CTNAG | 2 cut(s) | 186, 371 |
| HpySE526I | ACGT | 3 cut(s) | 292, 404, 415 |
| Hsp92II | CATG | 4 cut(s) | 68, 197, 381, 448 |
| LpnPI | CCDG | 9 cut(s) | 20, 32, 48, 59, 89, 116, 161, 188, 373 |
| Lsp1109I | GCAGC | 1 cut(s) | 226 |
| MaeII | ACGT | 3 cut(s) | 292, 404, 415 |
| MaeIII | GTNAC | 1 cut(s) | 362 |
| MboII | GAAGA | 5 cut(s) | 123, 147, 182, 252, 390 |
| MluCI | AATT | 3 cut(s) | 137, 298, 427 |
| MnlI | CCTC | 3 cut(s) | 67, 265, 316 |
| Mph1103I | ATGCAT | 1 cut(s) | 199 |
| MspI | CCGG | 1 cut(s) | 360 |
| MspR9I | CCNGG | 4 cut(s) | 8, 47, 104, 176 |
| MvaI | CCWGG | 4 cut(s) | 8, 47, 104, 176 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 203 |
| NlaIII | CATG | 4 cut(s) | 68, 197, 381, 448 |
| NlaIV | GGNNCC | 2 cut(s) | 12, 51 |
| NsiI | ATGCAT | 1 cut(s) | 199 |
| NspI | RCATGY | 1 cut(s) | 381 |
| PagI | TCATGA | 1 cut(s) | 444 |
| PasI | CCCWGGG | 1 cut(s) | 103 |
| PkrI | GCNGC | 1 cut(s) | 216 |
| Ppu21I | YACGTR | 1 cut(s) | 416 |
| PpuMI | RGGWCCY | 1 cut(s) | 50 |
| Psp5II | RGGWCCY | 1 cut(s) | 50 |
| Psp6I | CCWGG | 4 cut(s) | 6, 45, 102, 174 |
| PspGI | CCWGG | 4 cut(s) | 6, 45, 102, 174 |
| PspN4I | GGNNCC | 2 cut(s) | 12, 51 |
| PspPI | GGNCC | 2 cut(s) | 4, 50 |
| PspPPI | RGGWCCY | 1 cut(s) | 50 |
| RsaI | GTAC | 1 cut(s) | 69 |
| RsaNI | GTAC | 1 cut(s) | 68 |
| SatI | GCNGC | 1 cut(s) | 215 |
| Sau96I | GGNCC | 2 cut(s) | 4, 50 |
| ScrFI | CCNGG | 4 cut(s) | 8, 47, 104, 176 |
| SetI | ASST | 8 cut(s) | 12, 37, 55, 192, 208, 295, 407, 418 |
| SinI | GGWCC | 1 cut(s) | 50 |
| Sse9I | AATT | 3 cut(s) | 137, 298, 427 |
| SspI | AATATT | 1 cut(s) | 457 |
| StyD4I | CCNGG | 4 cut(s) | 6, 45, 102, 174 |
| TaaI | ACNGT | 1 cut(s) | 59 |
| TaiI | ACGT | 3 cut(s) | 295, 407, 418 |
| TasI | AATT | 3 cut(s) | 137, 298, 427 |
| TatI | WGTACW | 1 cut(s) | 67 |
| TseI | GCWGC | 1 cut(s) | 214 |
| TspDTI | ATGAA | 5 cut(s) | 6, 53, 182, 433, 461 |
| VpaK11BI | GGWCC | 1 cut(s) | 50 |
| XceI | RCATGY | 1 cut(s) | 381 |
| XmiI | GTMKAC | 1 cut(s) | 412 |
| Zsp2I | ATGCAT | 1 cut(s) | 199 |