Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0002689

Physical Location & Seq

Genomic Coordinates Reverse (-)

58802560 .. 58826538

Gene Structure 23979 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG403900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 774 bp

ATGTGCGAGTCGAGCGACGCCACCACCCACAGTAGTGACGACGTGGAGGCGGATACTGGTGGATTGCAACAAATGACTTTCAAACTTCAGTTTGCAGAGTCCACTCTTTTTGTTGAGACTGAATTTACTCATCTAAATTTTGCCGGATCAGATCATAAGCTTGAGAAAAAGAATATTGAATATTTGAGGAATTACTGTATAACATCAAATTCGTTATATTCCAGCTATGGATTTGTTTCACTGAGCGGGAGGCAGAAGAGCAATCTGGGCGTGAAAGGTTGTGAAACCAGTGGTTTCTTGAGCAGGAGAAGATACGAAGTACCAAAGGGGGATAAAATAAGAGATTTTCTTCGCTCTGTACAACAGGAACTAGCACCAGAGTTTCGAGAAGTTTCTTCATCACTCTCTCACCCATCCAATGAAGGCCAGAGACCATCCCATGTTCATGCGCCCGACACAGAAAGGCAGAGTACAAATACCTCCCAAGGACAGGGAAGACAAGGAATGAGTTTTGCACAAGCTATTTCATCGCAGTCTCACCCATCTGACGAGGATCAGGGACGCAACCGTCTTCATACACTTGAGGCCGAAAGACAGCGTAGAAATAATCGTCAAAGAGAGAGGCGACAGTCATTAAGTGCTTCACAACGAGCAGAAAGTTTAGCCCAAAGACGTGCTAATTACCACTTACGGCGGCAGATGATAAACACAAGTGTGGAGAACAGAAGTATGGCAAATCAATTAGGAGCAATGGCCGGTAACTTTCTACTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000160 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006396 GO:0006725 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009314 GO:0009416 GO:0009628 GO:0009637 GO:0009639 GO:0009719 GO:0009723 GO:0009725 GO:0009755 GO:0009873 GO:0009892 GO:0009987 GO:0010033 GO:0010099 GO:0010114 GO:0010467 GO:0010468 GO:0010605 GO:0010608 GO:0010629 GO:0014070 GO:0016070 GO:0016441 GO:0016458 GO:0019222 GO:0023052 GO:0031047 GO:0031050 GO:0032870 GO:0034641 GO:0035194 GO:0035195 GO:0035196 GO:0035556 GO:0040029 GO:0042221 GO:0042752 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043331 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0048519 GO:0048580 GO:0048583 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051239 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0070918 GO:0071310 GO:0071359 GO:0071369 GO:0071407 GO:0071495 GO:0071704 GO:0090304 GO:1901360 GO:1901698 GO:1901699 GO:2000026 GO:2000030

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

XAP5

Protein Analysis

257

Amino Acids

29.1

Weight (kDa)

9.05

Isoelectric Point (pI)

61.66

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002689)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g12080 FvH4_3g27050 FvH4_4g08921 FvH4_5g28372
rosa_chinensis	RchiOBHm_Chr1g0349481 RchiOBHm_Chr1g0374471 RchiOBHm_Chr5g0079741
rosa_laevigata	RLG00000017976
rosa_roxburghii	Rroxscaffold_3G00244850
rosa_rugosa	Rorug04G0258600
rosa_samantha	Rh1AG409300 Rh1AG410000 Rh1AG410700 Rh1BG371600 Rh1CG384300 Rh1CG385300 Rh1DG401200 Rh1DG402300 Rh2AG244300 Rh2AG246200 Rh2AG314700 Rh2AG497800 Rh2BG107600 Rh2CG109400 Rh2CG333100 Rh2CG483800 Rh2DG253100 Rh2DG254400 Rh2DG403900 Rh2DG603400 Rh4AG011800 Rh4DG085100 Rh4DG137800 Rh5AG127700 Rh5AG128200 Rh5BG534800 Rh6AG131600 Rh6BG257800 Rh7BG020500 Rh7CG030700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	567
AccBSI	CCGCTC	1 cut(s)	246
AciI	CCGC	3 cut(s)	50, 246, 694
AclWI	GGATC	2 cut(s)	154, 561
AcoI	YGGCCR	1 cut(s)	753
AcsI	RAATTY	3 cut(s)	122, 136, 208
AcuI	CTGAAG	1 cut(s)	71
AcyI	GRCGYC	1 cut(s)	18
AfaI	GTAC	3 cut(s)	321, 360, 472
AfiI	CCNNNNNNNGG	1 cut(s)	490
AgsI	TTSAA	2 cut(s)	82, 179
AjiI	CACGTC	2 cut(s)	43, 674
AleI	CACNNNNGTG	2 cut(s)	33, 713
AluBI	AGCT	3 cut(s)	160, 225, 521
AluI	AGCT	3 cut(s)	160, 225, 521
Alw26I	GTCTC	3 cut(s)	110, 424, 540
AlwI	GGATC	2 cut(s)	154, 561
AoxI	GGCC	3 cut(s)	424, 585, 753
ApoI	RAATTY	3 cut(s)	122, 136, 208
AspLEI	GCGC	1 cut(s)	451
AsuHPI	GGTGA	2 cut(s)	401, 530
BbsI	GAAGAC	2 cut(s)	502, 563
BccI	CCATC	3 cut(s)	421, 442, 550
BceAI	ACGGC	1 cut(s)	707
BciVI	GTATCC	1 cut(s)	46
BcoDI	GTCTC	3 cut(s)	110, 424, 540
BfaI	CTAG	1 cut(s)	371
BfuI	GTATCC	1 cut(s)	46
BisI	GCNGC	1 cut(s)	695
BlsI	GCNGC	1 cut(s)	696
BmgBI	CACGTC	2 cut(s)	43, 674
BpiI	GAAGAC	2 cut(s)	502, 563
BpuEI	CTTGAG	3 cut(s)	182, 319, 602
BsaHI	GRCGYC	1 cut(s)	18
BsaI	GGTCTC	1 cut(s)	424
BsaJI	CCNNGG	1 cut(s)	484
Bsc4I	CCNNNNNNNGG	1 cut(s)	490
Bse118I	RCCGGY	1 cut(s)	755
Bse1I	ACTGG	2 cut(s)	61, 288
Bse3DI	GCAATG	1 cut(s)	756
BseDI	CCNNGG	1 cut(s)	484
BseGI	GGATG	2 cut(s)	413, 434
BseLI	CCNNNNNNNGG	1 cut(s)	490
BseMI	GCAATG	1 cut(s)	756
BseMII	CTCAG	1 cut(s)	233
BseNI	ACTGG	2 cut(s)	61, 288
BshFI	GGCC	3 cut(s)	426, 587, 755
BsiSI	CCGG	2 cut(s)	144, 756
BslFI	GGGAC	1 cut(s)	573
BslI	CCNNNNNNNGG	1 cut(s)	490
BsmAI	GTCTC	3 cut(s)	110, 424, 540
BsmFI	GGGAC	1 cut(s)	573
BsnI	GGCC	3 cut(s)	426, 587, 755
Bso31I	GGTCTC	1 cut(s)	424
Bsp1407I	TGTACA	1 cut(s)	358
Bsp143I	GATC	3 cut(s)	146, 151, 553
BspACI	CCGC	3 cut(s)	50, 246, 694
BspANI	GGCC	3 cut(s)	426, 587, 755
BspCNI	CTCAG	1 cut(s)	234
BspPI	GGATC	2 cut(s)	154, 561
BspQI	GCTCTTC	1 cut(s)	251
BspTNI	GGTCTC	1 cut(s)	424
BsrBI	CCGCTC	1 cut(s)	246
BsrDI	GCAATG	1 cut(s)	756
BsrFI	RCCGGY	1 cut(s)	755
BsrGI	TGTACA	1 cut(s)	358
BsrI	ACTGG	2 cut(s)	61, 288
BssAI	RCCGGY	1 cut(s)	755
BssECI	CCNNGG	1 cut(s)	484
BssMI	GATC	3 cut(s)	146, 151, 553
BssNI	GRCGYC	1 cut(s)	18
BssT1I	CCWWGG	1 cut(s)	484
Bst4CI	ACNGT	4 cut(s)	32, 197, 569, 630
Bst6I	CTCTTC	1 cut(s)	251
BstACI	GRCGYC	1 cut(s)	18
BstAUI	TGTACA	1 cut(s)	358
BstDEI	CTNAG	1 cut(s)	242
BstF5I	GGATG	2 cut(s)	413, 434
BstHHI	GCGC	1 cut(s)	451
BstKTI	GATC	3 cut(s)	149, 154, 556
BstMAI	GTCTC	3 cut(s)	110, 424, 540
BstMBI	GATC	3 cut(s)	146, 151, 553
BstMWI	GCNNNNNNNGC	2 cut(s)	12, 267
BstV2I	GAAGAC	2 cut(s)	502, 563
BsuI	GTATCC	1 cut(s)	46
BsuRI	GGCC	3 cut(s)	426, 587, 755
BtgZI	GCGATG	1 cut(s)	513
BtrI	CACGTC	2 cut(s)	43, 674
BtsCI	GGATG	2 cut(s)	413, 434
BtsIMutI	CAGTG	2 cut(s)	239, 295
CfoI	GCGC	1 cut(s)	451
Cfr10I	RCCGGY	1 cut(s)	755
CseI	GACGC	2 cut(s)	26, 570
Csp6I	GTAC	3 cut(s)	320, 359, 471
CspCI	CAANNNNNGTGG	2 cut(s)	91, 126
CviAII	CATG	2 cut(s)	440, 446
CviJI	RGCY	7 cut(s)	160, 225, 426, 521, 587, 665, 755
CviKI_1	RGCY	7 cut(s)	160, 225, 426, 521, 587, 665, 755
CviQI	GTAC	3 cut(s)	320, 359, 471
DdeI	CTNAG	1 cut(s)	242
DpnI	GATC	3 cut(s)	148, 153, 555
DpnII	GATC	3 cut(s)	146, 151, 553
DrdI	GACNNNNNNGTC	1 cut(s)	567
DseDI	GACNNNNNNGTC	1 cut(s)	567
EaeI	YGGCCR	1 cut(s)	753
Eam1104I	CTCTTC	1 cut(s)	251
EarI	CTCTTC	1 cut(s)	251
EciI	GGCGGA	1 cut(s)	65
Eco130I	CCWWGG	1 cut(s)	484
Eco31I	GGTCTC	1 cut(s)	424
Eco57I	CTGAAG	1 cut(s)	71
EcoT14I	CCWWGG	1 cut(s)	484
ErhI	CCWWGG	1 cut(s)	484
FaeI	CATG	2 cut(s)	443, 449
FaiI	YATR	8 cut(s)	156, 200, 217, 228, 441, 447, 576, 731
FaqI	GGGAC	1 cut(s)	573
FatI	CATG	2 cut(s)	439, 445
FauI	CCCGC	1 cut(s)	239
Fnu4HI	GCNGC	1 cut(s)	695
FokI	GGATG	2 cut(s)	400, 421
Fsp4HI	GCNGC	1 cut(s)	695
FspBI	CTAG	1 cut(s)	371
GlaI	GCGC	1 cut(s)	450
GluI	GCNGC	1 cut(s)	695
HaeIII	GGCC	3 cut(s)	426, 587, 755
HapII	CCGG	2 cut(s)	144, 756
HgaI	GACGC	2 cut(s)	26, 570
HhaI	GCGC	1 cut(s)	451
Hin1I	GRCGYC	1 cut(s)	18
Hin1II	CATG	2 cut(s)	443, 449
Hin6I	GCGC	1 cut(s)	449
HinP1I	GCGC	1 cut(s)	449
HindIII	AAGCTT	1 cut(s)	158
HinfI	GANTC	2 cut(s)	8, 98
HpaII	CCGG	2 cut(s)	144, 756
HphI	GGTGA	2 cut(s)	401, 530
Hpy166II	GTNNAC	1 cut(s)	102
Hpy188I	TCNGA	2 cut(s)	151, 547
Hpy188III	TCNNGA	2 cut(s)	298, 386
Hpy8I	GTNNAC	1 cut(s)	102
Hpy99I	CGWCG	2 cut(s)	20, 44
HpyAV	CCTTC	1 cut(s)	416
HpyCH4III	ACNGT	4 cut(s)	32, 197, 569, 630
HpyCH4IV	ACGT	2 cut(s)	42, 673
HpyCH4V	TGCA	3 cut(s)	67, 95, 515
HpyF10VI	GCNNNNNNNGC	2 cut(s)	12, 267
HpyF3I	CTNAG	1 cut(s)	242
HpySE526I	ACGT	2 cut(s)	42, 673
Hsp92I	GRCGYC	1 cut(s)	18
Hsp92II	CATG	2 cut(s)	443, 449
HspAI	GCGC	1 cut(s)	449
Kzo9I	GATC	3 cut(s)	146, 151, 553
LguI	GCTCTTC	1 cut(s)	251
LmnI	GCTCC	1 cut(s)	746
MaeI	CTAG	1 cut(s)	371
MaeII	ACGT	2 cut(s)	42, 673
MaeIII	GTNAC	2 cut(s)	35, 758
MalI	GATC	3 cut(s)	148, 153, 555
MbiI	CCGCTC	1 cut(s)	246
MboI	GATC	3 cut(s)	146, 151, 553
MboII	GAAGA	6 cut(s)	268, 321, 341, 387, 507, 563
MluCI	AATT	6 cut(s)	122, 136, 190, 208, 679, 740
MlyI	GAGTC	2 cut(s)	17, 107
MnlI	CCTC	7 cut(s)	40, 180, 243, 490, 544, 577, 615
MseI	TTAA	1 cut(s)	635
MslI	CAYNNNNRTG	3 cut(s)	33, 444, 713
MspI	CCGG	2 cut(s)	144, 756
MwoI	GCNNNNNNNGC	2 cut(s)	12, 267
NdeII	GATC	3 cut(s)	146, 151, 553
NlaIII	CATG	2 cut(s)	443, 449
NmuCI	GTSAC	1 cut(s)	35
OliI	CACNNNNGTG	2 cut(s)	33, 713
PciSI	GCTCTTC	1 cut(s)	251
PkrI	GCNGC	1 cut(s)	696
PleI	GAGTC	2 cut(s)	16, 106
PpsI	GAGTC	2 cut(s)	16, 106
RsaI	GTAC	3 cut(s)	321, 360, 472
RsaNI	GTAC	3 cut(s)	320, 359, 471
RseI	CAYNNNNRTG	3 cut(s)	33, 444, 713
SapI	GCTCTTC	1 cut(s)	251
SaqAI	TTAA	1 cut(s)	635
SatI	GCNGC	1 cut(s)	695
Sau3AI	GATC	3 cut(s)	146, 151, 553
SchI	GAGTC	2 cut(s)	17, 107
SetI	ASST	7 cut(s)	45, 162, 227, 280, 482, 523, 676
SmiMI	CAYNNNNRTG	3 cut(s)	33, 444, 713
SmlI	CTYRAG	3 cut(s)	161, 298, 581
SmoI	CTYRAG	3 cut(s)	161, 298, 581
Sse9I	AATT	6 cut(s)	122, 136, 190, 208, 679, 740
SsiI	CCGC	3 cut(s)	50, 246, 694
SspI	AATATT	2 cut(s)	175, 182
SspMI	CTAG	1 cut(s)	371
StyI	CCWWGG	1 cut(s)	484
TaaI	ACNGT	4 cut(s)	32, 197, 569, 630
TaiI	ACGT	2 cut(s)	45, 676
TaqI	TCGA	2 cut(s)	11, 385
TasI	AATT	6 cut(s)	122, 136, 190, 208, 679, 740
TatI	WGTACW	2 cut(s)	358, 470
TauI	GCSGC	1 cut(s)	697
Tru1I	TTAA	1 cut(s)	635
Tru9I	TTAA	1 cut(s)	635
TscAI	CASTG	2 cut(s)	246, 295
TseFI	GTSAC	1 cut(s)	35
Tsp45I	GTSAC	1 cut(s)	35
TspDTI	ATGAA	5 cut(s)	387, 434, 435, 516, 563
TspRI	CASTG	2 cut(s)	246, 295
XapI	RAATTY	3 cut(s)	122, 136, 208
XspI	CTAG	1 cut(s)	371

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.