Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1B

Orthogroup ID

OG0002689

Physical Location & Seq

Genomic Coordinates Forward (+)

50168202 .. 50189348

Gene Structure 21147 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1BG371600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1035 bp

ATGTCTGGTCCTCCAGGTTATGATTATGACAAGTATCCAGATTATGAGGATAGGCAAATGGGTTGGCATTTTCCTTTGAGTGAAGAAATCAACAAATTGCCAGATATCTCTGCCTTAAAGTTGGAGACTCCAACTGGATCCAGTAGCATAAGAAATAAAGGGAAAGAAAAAGCAGAGTCTTCAAAGACTCCAGTGATAGAGATCATCAAAAAAATAAATCCGAAATGGACTCCAATCAACCGACCTCATTTGCAGATTCAGAAAATTATGCGGGATATTGTTATCGACCTTGCTATTCAAGGTAAAGAAAAGGGTAACTTCACTATTGAAGATGTTTACATGTGCAATGGTGTGGCCAAAGTTGCTGTGAGTGTATCAAACAAAGACCTCAATAAATCATTGCTTGCAGTTGCGAAGATTTTCTTCCGTGACAAGGATGCGACGACATGTTTGGAGTTGGATACCTTTTATAAGGCTATCCTTAACTGCATGACCGACGAGGACTTTAAGCAGTTATACTTTCAGCCTCTCTTCTATTCAGAAAGTGAGACGATGTATTTTCTTCTTGATATCTTACTAGTGGCTGACCATATCAAGACGAGTAAAAAGCGACGTGTTGATCGTTATGATGGTATTATCAAGAAAGTGCTACATCAAAGATATAGTATTTCACAAGTAGTTTCAAAGGCAAAGCAATTTGAGGGGCTTTTGGATAATACCAGATATGGCGATTCTTACCGTAGTCTAGTTGGTATTGCAAGAGTGTTTTTCCATCACTTTACATGTTTGGGCCAAAATCTGAGCATGGAAGAAATATATGGATACCTGTATCAAACACTAGAAGATAATCGTGGTCATTGTGGTGGCAAAAAGAAGGGGAGGGATCGAAGATTGTGGTCGACTTCCGGAGGAAGGTTGAAAAAGATTGGGGGCGTTTCTCAGTTCGTGTATAGATATGAATTTTCTGTTACTATAGCTTATTGGATTTTGGGTGCAGTGGAGAAACTTCGCCAATGCTGCCTTGAAGAAATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001101 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003697 GO:0003723 GO:0003729 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005829 GO:0005886 GO:0006950 GO:0006996 GO:0007275 GO:0008150 GO:0009266 GO:0009269 GO:0009409 GO:0009414 GO:0009415 GO:0009628 GO:0009631 GO:0009719 GO:0009725 GO:0009737 GO:0009790 GO:0009791 GO:0009793 GO:0009908 GO:0009987 GO:0010033 GO:0010035 GO:0010154 GO:0010228 GO:0016020 GO:0016043 GO:0019222 GO:0022414 GO:0031323 GO:0031974 GO:0031981 GO:0032392 GO:0032501 GO:0032502 GO:0032508 GO:0033993 GO:0042221 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043457 GO:0043467 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0048316 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048608 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051276 GO:0061458 GO:0065007 GO:0070013 GO:0071103 GO:0071840 GO:0071944 GO:0090567 GO:0097159 GO:0097305 GO:0099402 GO:1901363 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CSD zf-CCHC

Protein Analysis

344

Amino Acids

39.68

Weight (kDa)

8.98

Isoelectric Point (pI)

40.3

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002689)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g12080 FvH4_3g27050 FvH4_4g08921 FvH4_5g28372
rosa_chinensis	RchiOBHm_Chr1g0349481 RchiOBHm_Chr1g0374471 RchiOBHm_Chr5g0079741
rosa_laevigata	RLG00000017976
rosa_roxburghii	Rroxscaffold_3G00244850
rosa_rugosa	Rorug04G0258600
rosa_samantha	Rh1AG409300 Rh1AG410000 Rh1AG410700 Rh1BG371600 Rh1CG384300 Rh1CG385300 Rh1DG401200 Rh1DG402300 Rh2AG244300 Rh2AG246200 Rh2AG314700 Rh2AG497800 Rh2BG107600 Rh2CG109400 Rh2CG333100 Rh2CG483800 Rh2DG253100 Rh2DG254400 Rh2DG403900 Rh2DG603400 Rh4AG011800 Rh4DG085100 Rh4DG137800 Rh5AG127700 Rh5AG128200 Rh5BG534800 Rh6AG131600 Rh6BG257800 Rh7BG020500 Rh7CG030700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	471
AccI	GTMKAC	1 cut(s)	899
AccIII	TCCGGA	1 cut(s)	905
AciI	CCGC	1 cut(s)	271
AclWI	GGATC	3 cut(s)	132, 145, 891
AcoI	YGGCCR	1 cut(s)	354
AcsI	RAATTY	2 cut(s)	959, 1029
AfiI	CCNNNNNNNGG	2 cut(s)	433, 912
AflIII	ACRYGT	4 cut(s)	339, 446, 613, 782
AgsI	TTSAA	6 cut(s)	183, 299, 329, 684, 919, 1025
AhlI	ACTAGT	1 cut(s)	577
AjiI	CACGTC	1 cut(s)	614
AjnI	CCWGG	1 cut(s)	13
AluBI	AGCT	1 cut(s)	977
AluI	AGCT	1 cut(s)	977
Alw26I	GTCTC	2 cut(s)	119, 542
AlwI	GGATC	3 cut(s)	132, 145, 891
Aor13HI	TCCGGA	1 cut(s)	905
AoxI	GGCC	2 cut(s)	354, 790
ApeKI	GCWGC	1 cut(s)	1017
ApoI	RAATTY	2 cut(s)	959, 1029
ArsI	GACNNNNNNTTYG	2 cut(s)	433, 465
Asp700I	GAANNNNTTC	1 cut(s)	419
AspS9I	GGNCC	2 cut(s)	8, 790
AvaII	GGWCC	1 cut(s)	8
BalI	TGGCCA	1 cut(s)	356
BamHI	GGATCC	1 cut(s)	137
BbsI	GAAGAC	1 cut(s)	171
BbvI	GCAGC	1 cut(s)	1004
BccI	CCATC	2 cut(s)	623, 780
BciT130I	CCWGG	1 cut(s)	15
BciVI	GTATCC	3 cut(s)	45, 454, 815
BcoDI	GTCTC	2 cut(s)	119, 542
BcuI	ACTAGT	1 cut(s)	577
BfaI	CTAG	3 cut(s)	578, 746, 839
BfmI	CTRYAG	1 cut(s)	972
BfuI	GTATCC	3 cut(s)	45, 454, 815
BisI	GCNGC	1 cut(s)	1018
BlsI	GCNGC	1 cut(s)	1019
Bme1390I	CCNGG	1 cut(s)	15
Bme18I	GGWCC	1 cut(s)	8
BmgBI	CACGTC	1 cut(s)	614
BmgT120I	GGNCC	2 cut(s)	8, 790
BmiI	GGNNCC	1 cut(s)	139
BmrFI	CCNGG	1 cut(s)	15
BmsI	GCATC	1 cut(s)	427
BpiI	GAAGAC	1 cut(s)	171
BpmI	CTGGAG	1 cut(s)	174
BsaBI	GATNNNNATC	1 cut(s)	200
BsaWI	WCCGGW	1 cut(s)	905
Bsc4I	CCNNNNNNNGG	2 cut(s)	433, 912
Bse1I	ACTGG	3 cut(s)	139, 141, 191
Bse3DI	GCAATG	2 cut(s)	352, 398
Bse8I	GATNNNNATC	1 cut(s)	200
BseAI	TCCGGA	1 cut(s)	905
BseBI	CCWGG	1 cut(s)	15
BseGI	GGATG	1 cut(s)	442
BseJI	GATNNNNATC	1 cut(s)	200
BseLI	CCNNNNNNNGG	2 cut(s)	433, 912
BseMI	GCAATG	2 cut(s)	352, 398
BseMII	CTCAG	2 cut(s)	791, 953
BseNI	ACTGG	3 cut(s)	139, 141, 191
BseXI	GCAGC	1 cut(s)	1004
BsgI	GTGCAG	1 cut(s)	1014
BshFI	GGCC	2 cut(s)	356, 792
BsiSI	CCGG	1 cut(s)	906
BslI	CCNNNNNNNGG	2 cut(s)	433, 912
BsmAI	GTCTC	2 cut(s)	119, 542
BsmBI	CGTCTC	1 cut(s)	542
BsnI	GGCC	2 cut(s)	356, 792
Bsp13I	TCCGGA	1 cut(s)	905
Bsp143I	GATC	4 cut(s)	137, 201, 619, 883
BspACI	CCGC	1 cut(s)	271
BspANI	GGCC	2 cut(s)	356, 792
BspCNI	CTCAG	2 cut(s)	792, 952
BspEI	TCCGGA	1 cut(s)	905
BspLI	GGNNCC	1 cut(s)	139
BspPI	GGATC	3 cut(s)	132, 145, 891
BsrDI	GCAATG	2 cut(s)	352, 398
BsrI	ACTGG	3 cut(s)	139, 141, 191
BssMI	GATC	4 cut(s)	137, 201, 619, 883
Bst2UI	CCWGG	1 cut(s)	15
Bst4CI	ACNGT	1 cut(s)	740
Bst6I	CTCTTC	1 cut(s)	536
BstC8I	GCNNGC	1 cut(s)	405
BstDEI	CTNAG	2 cut(s)	800, 939
BstF5I	GGATG	1 cut(s)	442
BstKTI	GATC	4 cut(s)	140, 204, 622, 886
BstMAI	GTCTC	2 cut(s)	119, 542
BstMBI	GATC	4 cut(s)	137, 201, 619, 883
BstMWI	GCNNNNNNNGC	2 cut(s)	362, 1017
BstNI	CCWGG	1 cut(s)	15
BstNSI	RCATGY	3 cut(s)	343, 450, 786
BstSCI	CCNGG	1 cut(s)	13
BstSFI	CTRYAG	1 cut(s)	972
BstV1I	GCAGC	1 cut(s)	1004
BstV2I	GAAGAC	1 cut(s)	171
BstX2I	RGATCY	1 cut(s)	137
BstYI	RGATCY	1 cut(s)	137
BsuI	GTATCC	3 cut(s)	45, 454, 815
BsuRI	GGCC	2 cut(s)	356, 792
BtrI	CACGTC	1 cut(s)	614
BtsCI	GGATG	1 cut(s)	442
BtsI	GCAGTG	1 cut(s)	1002
BtsIMutI	CAGTG	2 cut(s)	198, 1002
Cac8I	GCNNGC	1 cut(s)	405
Cfr13I	GGNCC	2 cut(s)	8, 790
CviAII	CATG	5 cut(s)	340, 447, 490, 783, 805
CviJI	RGCY	7 cut(s)	356, 476, 526, 584, 706, 792, 977
CviKI_1	RGCY	7 cut(s)	356, 476, 526, 584, 706, 792, 977
DdeI	CTNAG	2 cut(s)	800, 939
DpnI	GATC	4 cut(s)	139, 203, 621, 885
DpnII	GATC	4 cut(s)	137, 201, 619, 883
EaeI	YGGCCR	1 cut(s)	354
Eam1104I	CTCTTC	1 cut(s)	536
EarI	CTCTTC	1 cut(s)	536
Eco32I	GATATC	2 cut(s)	106, 571
Eco47I	GGWCC	1 cut(s)	8
EcoRII	CCWGG	1 cut(s)	13
EcoRV	GATATC	2 cut(s)	106, 571
Esp3I	CGTCTC	1 cut(s)	542
FaeI	CATG	5 cut(s)	343, 450, 493, 786, 808
FalI	AAGNNNNNCTT	4 cut(s)	302, 334, 407, 439
FatI	CATG	5 cut(s)	339, 446, 489, 782, 804
FauI	CCCGC	1 cut(s)	264
FblI	GTMKAC	1 cut(s)	899
Fnu4HI	GCNGC	1 cut(s)	1018
FokI	GGATG	1 cut(s)	449
Fsp4HI	GCNGC	1 cut(s)	1018
FspBI	CTAG	3 cut(s)	578, 746, 839
GluI	GCNGC	1 cut(s)	1018
GsuI	CTGGAG	1 cut(s)	174
HaeIII	GGCC	2 cut(s)	356, 792
HapII	CCGG	1 cut(s)	906
Hin1II	CATG	5 cut(s)	343, 450, 493, 786, 808
HincII	GTYRAC	1 cut(s)	900
HindII	GTYRAC	1 cut(s)	900
HinfI	GANTC	6 cut(s)	127, 176, 187, 229, 256, 731
HpaII	CCGG	1 cut(s)	906
Hpy166II	GTNNAC	2 cut(s)	337, 900
Hpy188I	TCNGA	4 cut(s)	222, 261, 541, 801
Hpy188III	TCNNGA	5 cut(s)	38, 566, 595, 640, 906
Hpy8I	GTNNAC	2 cut(s)	337, 900
Hpy99I	CGWCG	3 cut(s)	445, 500, 615
HpyAV	CCTTC	2 cut(s)	868, 906
HpyCH4III	ACNGT	1 cut(s)	740
HpyCH4IV	ACGT	1 cut(s)	613
HpyCH4V	TGCA	6 cut(s)	253, 345, 407, 489, 758, 995
HpyF10VI	GCNNNNNNNGC	2 cut(s)	362, 1017
HpyF3I	CTNAG	2 cut(s)	800, 939
HpySE526I	ACGT	1 cut(s)	613
Hsp92II	CATG	5 cut(s)	343, 450, 493, 786, 808
Kpn2I	TCCGGA	1 cut(s)	905
Kzo9I	GATC	4 cut(s)	137, 201, 619, 883
LpnPI	CCDG	9 cut(s)	27, 51, 114, 120, 154, 204, 733, 839, 919
Lsp1109I	GCAGC	1 cut(s)	1004
LweI	GCATC	1 cut(s)	427
MaeI	CTAG	3 cut(s)	578, 746, 839
MaeII	ACGT	1 cut(s)	613
MaeIII	GTNAC	3 cut(s)	314, 428, 967
MalI	GATC	4 cut(s)	139, 203, 621, 885
MboI	GATC	4 cut(s)	137, 201, 619, 883
MflI	RGATCY	1 cut(s)	137
MlsI	TGGCCA	1 cut(s)	356
MluCI	AATT	5 cut(s)	95, 264, 695, 959, 1029
MluNI	TGGCCA	1 cut(s)	356
MlyI	GAGTC	4 cut(s)	121, 181, 185, 223
MmeI	TCCRAC	3 cut(s)	102, 155, 438
MnlI	CCTC	9 cut(s)	21, 40, 255, 398, 493, 537, 694, 873, 902
Mox20I	TGGCCA	1 cut(s)	356
MroI	TCCGGA	1 cut(s)	905
MroXI	GAANNNNTTC	1 cut(s)	419
MscI	TGGCCA	1 cut(s)	356
MseI	TTAA	3 cut(s)	116, 483, 507
MslI	CAYNNNNRTG	1 cut(s)	861
Msp20I	TGGCCA	1 cut(s)	356
MspI	CCGG	1 cut(s)	906
MspR9I	CCNGG	1 cut(s)	15
MvaI	CCWGG	1 cut(s)	15
MwoI	GCNNNNNNNGC	2 cut(s)	362, 1017
NdeII	GATC	4 cut(s)	137, 201, 619, 883
NlaIII	CATG	5 cut(s)	343, 450, 493, 786, 808
NlaIV	GGNNCC	1 cut(s)	139
NmuCI	GTSAC	1 cut(s)	428
NspI	RCATGY	3 cut(s)	343, 450, 786
PciI	ACATGT	3 cut(s)	339, 446, 782
PcsI	WCGNNNNNNNCGW	1 cut(s)	619
PdmI	GAANNNNTTC	1 cut(s)	419
PfeI	GAWTC	2 cut(s)	256, 731
PkrI	GCNGC	1 cut(s)	1019
PleI	GAGTC	4 cut(s)	121, 181, 184, 223
PpsI	GAGTC	4 cut(s)	121, 181, 184, 223
PscI	ACATGT	3 cut(s)	339, 446, 782
PsiI	TTATAA	1 cut(s)	471
Psp6I	CCWGG	1 cut(s)	13
PspGI	CCWGG	1 cut(s)	13
PspN4I	GGNNCC	1 cut(s)	139
PspPI	GGNCC	2 cut(s)	8, 790
PsuI	RGATCY	1 cut(s)	137
RseI	CAYNNNNRTG	1 cut(s)	861
SalI	GTCGAC	1 cut(s)	898
SaqAI	TTAA	3 cut(s)	116, 483, 507
SatI	GCNGC	1 cut(s)	1018
Sau3AI	GATC	4 cut(s)	137, 201, 619, 883
Sau96I	GGNCC	2 cut(s)	8, 790
SchI	GAGTC	4 cut(s)	121, 181, 185, 223
ScrFI	CCNGG	1 cut(s)	15
SfaNI	GCATC	1 cut(s)	427
SfcI	CTRYAG	1 cut(s)	972
SinI	GGWCC	1 cut(s)	8
SmiMI	CAYNNNNRTG	1 cut(s)	861
SpeI	ACTAGT	1 cut(s)	577
Sse9I	AATT	5 cut(s)	95, 264, 695, 959, 1029
SsiI	CCGC	1 cut(s)	271
SspMI	CTAG	3 cut(s)	578, 746, 839
StyD4I	CCNGG	1 cut(s)	13
TaaI	ACNGT	1 cut(s)	740
TaiI	ACGT	1 cut(s)	616
TaqI	TCGA	3 cut(s)	285, 886, 899
TaqII	GACCGA	1 cut(s)	509
TasI	AATT	5 cut(s)	95, 264, 695, 959, 1029
TfiI	GAWTC	2 cut(s)	256, 731
Tru1I	TTAA	3 cut(s)	116, 483, 507
Tru9I	TTAA	3 cut(s)	116, 483, 507
TscAI	CASTG	2 cut(s)	198, 1002
TseFI	GTSAC	1 cut(s)	428
TseI	GCWGC	1 cut(s)	1017
Tsp45I	GTSAC	1 cut(s)	428
TspDTI	ATGAA	1 cut(s)	972
TspGWI	ACGGA	1 cut(s)	416
TspRI	CASTG	2 cut(s)	198, 1002
VpaK11BI	GGWCC	1 cut(s)	8
XapI	RAATTY	2 cut(s)	959, 1029
XceI	RCATGY	3 cut(s)	343, 450, 786
XmiI	GTMKAC	1 cut(s)	899
XmnI	GAANNNNTTC	1 cut(s)	419
XspI	CTAG	3 cut(s)	578, 746, 839

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.