No description available
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| fragaria_vesca | FvH4_2g12080 FvH4_3g27050 FvH4_4g08921 FvH4_5g28372 |
| rosa_chinensis | RchiOBHm_Chr1g0349481 RchiOBHm_Chr1g0374471 RchiOBHm_Chr5g0079741 |
| rosa_laevigata | RLG00000017976 |
| rosa_roxburghii | Rroxscaffold_3G00244850 |
| rosa_rugosa | Rorug04G0258600 |
| rosa_samantha | Rh1AG409300 Rh1AG410000 Rh1AG410700 Rh1BG371600 Rh1CG384300 Rh1CG385300 Rh1DG401200 Rh1DG402300 Rh2AG244300 Rh2AG246200 Rh2AG314700 Rh2AG497800 Rh2BG107600 Rh2CG109400 Rh2CG333100 Rh2CG483800 Rh2DG253100 Rh2DG254400 Rh2DG403900 Rh2DG603400 Rh4AG011800 Rh4DG085100 Rh4DG137800 Rh5AG127700 Rh5AG128200 Rh5BG534800 Rh6AG131600 Rh6BG257800 Rh7BG020500 Rh7CG030700 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AcoI | YGGCCR | 1 cut(s) | 70 |
| AcuI | CTGAAG | 2 cut(s) | 27, 144 |
| AfaI | GTAC | 1 cut(s) | 118 |
| AflIII | ACRYGT | 1 cut(s) | 238 |
| AjnI | CCWGG | 1 cut(s) | 72 |
| AluBI | AGCT | 1 cut(s) | 167 |
| AluI | AGCT | 1 cut(s) | 167 |
| Alw26I | GTCTC | 2 cut(s) | 136, 186 |
| AoxI | GGCC | 1 cut(s) | 70 |
| AsuHPI | GGTGA | 1 cut(s) | 176 |
| BalI | TGGCCA | 1 cut(s) | 72 |
| BccI | CCATC | 3 cut(s) | 62, 67, 88 |
| BceAI | ACGGC | 1 cut(s) | 36 |
| BciT130I | CCWGG | 1 cut(s) | 74 |
| BcoDI | GTCTC | 2 cut(s) | 136, 186 |
| Bme1390I | CCNGG | 1 cut(s) | 74 |
| BmiI | GGNNCC | 1 cut(s) | 78 |
| BmrFI | CCNGG | 1 cut(s) | 74 |
| BpuEI | CTTGAG | 1 cut(s) | 114 |
| BsaBI | GATNNNNATC | 1 cut(s) | 198 |
| Bse1I | ACTGG | 1 cut(s) | 195 |
| Bse8I | GATNNNNATC | 1 cut(s) | 198 |
| BseBI | CCWGG | 1 cut(s) | 74 |
| BseGI | GGATG | 2 cut(s) | 80, 199 |
| BseJI | GATNNNNATC | 1 cut(s) | 198 |
| BseNI | ACTGG | 1 cut(s) | 195 |
| BseRI | GAGGAG | 1 cut(s) | 154 |
| BshFI | GGCC | 1 cut(s) | 72 |
| BslFI | GGGAC | 1 cut(s) | 45 |
| BsmAI | GTCTC | 2 cut(s) | 136, 186 |
| BsmFI | GGGAC | 1 cut(s) | 45 |
| BsnI | GGCC | 1 cut(s) | 72 |
| Bsp143I | GATC | 1 cut(s) | 199 |
| BspANI | GGCC | 1 cut(s) | 72 |
| BspLI | GGNNCC | 1 cut(s) | 78 |
| BsrI | ACTGG | 1 cut(s) | 195 |
| BssMI | GATC | 1 cut(s) | 199 |
| Bst2UI | CCWGG | 1 cut(s) | 74 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 101 |
| BstF5I | GGATG | 2 cut(s) | 80, 199 |
| BstKTI | GATC | 1 cut(s) | 202 |
| BstMAI | GTCTC | 2 cut(s) | 136, 186 |
| BstMBI | GATC | 1 cut(s) | 199 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 101 |
| BstNI | CCWGG | 1 cut(s) | 74 |
| BstNSI | RCATGY | 1 cut(s) | 242 |
| BstSCI | CCNGG | 1 cut(s) | 72 |
| BsuRI | GGCC | 1 cut(s) | 72 |
| BtsCI | GGATG | 2 cut(s) | 80, 199 |
| BtsIMutI | CAGTG | 2 cut(s) | 156, 188 |
| Csp6I | GTAC | 1 cut(s) | 117 |
| CviAII | CATG | 3 cut(s) | 92, 215, 239 |
| CviJI | RGCY | 4 cut(s) | 5, 58, 72, 167 |
| CviKI_1 | RGCY | 4 cut(s) | 5, 58, 72, 167 |
| CviQI | GTAC | 1 cut(s) | 117 |
| DpnI | GATC | 1 cut(s) | 201 |
| DpnII | GATC | 1 cut(s) | 199 |
| EaeI | YGGCCR | 1 cut(s) | 70 |
| Eco57I | CTGAAG | 2 cut(s) | 27, 144 |
| EcoRII | CCWGG | 1 cut(s) | 72 |
| FaeI | CATG | 3 cut(s) | 95, 218, 242 |
| FaiI | YATR | 4 cut(s) | 29, 93, 216, 240 |
| FaqI | GGGAC | 1 cut(s) | 45 |
| FatI | CATG | 3 cut(s) | 91, 214, 238 |
| FokI | GGATG | 2 cut(s) | 67, 206 |
| HaeIII | GGCC | 1 cut(s) | 72 |
| Hin1II | CATG | 3 cut(s) | 95, 218, 242 |
| HphI | GGTGA | 1 cut(s) | 176 |
| Hpy166II | GTNNAC | 1 cut(s) | 244 |
| Hpy188I | TCNGA | 1 cut(s) | 163 |
| Hpy188III | TCNNGA | 1 cut(s) | 19 |
| Hpy8I | GTNNAC | 1 cut(s) | 244 |
| HpyCH4V | TGCA | 3 cut(s) | 95, 104, 214 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 101 |
| Hsp92II | CATG | 3 cut(s) | 95, 218, 242 |
| Kzo9I | GATC | 1 cut(s) | 199 |
| LpnPI | CCDG | 5 cut(s) | 32, 59, 86, 176, 188 |
| MaeIII | GTNAC | 1 cut(s) | 234 |
| MalI | GATC | 1 cut(s) | 201 |
| MboI | GATC | 1 cut(s) | 199 |
| MboII | GAAGA | 3 cut(s) | 33, 150, 209 |
| MfeI | CAATTG | 1 cut(s) | 247 |
| MlsI | TGGCCA | 1 cut(s) | 72 |
| MluCI | AATT | 2 cut(s) | 208, 247 |
| MluNI | TGGCCA | 1 cut(s) | 72 |
| MnlI | CCTC | 2 cut(s) | 132, 136 |
| Mox20I | TGGCCA | 1 cut(s) | 72 |
| MscI | TGGCCA | 1 cut(s) | 72 |
| MseI | TTAA | 1 cut(s) | 207 |
| Msp20I | TGGCCA | 1 cut(s) | 72 |
| MspR9I | CCNGG | 1 cut(s) | 74 |
| MunI | CAATTG | 1 cut(s) | 247 |
| MvaI | CCWGG | 1 cut(s) | 74 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 101 |
| NdeII | GATC | 1 cut(s) | 199 |
| NlaIII | CATG | 3 cut(s) | 95, 218, 242 |
| NlaIV | GGNNCC | 1 cut(s) | 78 |
| NspI | RCATGY | 1 cut(s) | 242 |
| PciI | ACATGT | 1 cut(s) | 238 |
| PscI | ACATGT | 1 cut(s) | 238 |
| Psp6I | CCWGG | 1 cut(s) | 72 |
| PspGI | CCWGG | 1 cut(s) | 72 |
| PspN4I | GGNNCC | 1 cut(s) | 78 |
| RsaI | GTAC | 1 cut(s) | 118 |
| RsaNI | GTAC | 1 cut(s) | 117 |
| SaqAI | TTAA | 1 cut(s) | 207 |
| Sau3AI | GATC | 1 cut(s) | 199 |
| ScrFI | CCNGG | 1 cut(s) | 74 |
| SetI | ASST | 3 cut(s) | 128, 169, 207 |
| SmlI | CTYRAG | 1 cut(s) | 129 |
| SmoI | CTYRAG | 1 cut(s) | 129 |
| Sse9I | AATT | 2 cut(s) | 208, 247 |
| StyD4I | CCNGG | 1 cut(s) | 72 |
| TaqI | TCGA | 1 cut(s) | 62 |
| TasI | AATT | 2 cut(s) | 208, 247 |
| TatI | WGTACW | 1 cut(s) | 116 |
| Tru1I | TTAA | 1 cut(s) | 207 |
| Tru9I | TTAA | 1 cut(s) | 207 |
| TscAI | CASTG | 2 cut(s) | 156, 195 |
| TspDTI | ATGAA | 3 cut(s) | 33, 80, 210 |
| TspRI | CASTG | 2 cut(s) | 156, 195 |
| XceI | RCATGY | 1 cut(s) | 242 |