Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0006952

Physical Location & Seq

Genomic Coordinates Reverse (-)

14330564 .. 14331163

Gene Structure 600 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000001340

Sequence Viewer

CDS Protein Promoter (2k)

Length: 600 bp

ATGGTAGTGAGAATTCTCCCTTATGATGACACATTTGAAGATGATCTTTCCTACAAATTCAAGGTGGAGATCTTCTCTTTCGAGATTGGTGAATGGAGAGAGTCAAATATCTCGTTCCTACGAAGATTTAAACTTAACGATATCAATTCCAATGTTCACTTTGCTCACAATGAAATGCTGTATTGGTCCAGTATCTGGGGCGATTATAACTTTCTGATTGGGTTGGACCCGTTCATAATCAGCGACACTAATAGCAACATCATCAGGACCAGTAGTACTAGCAATAGTAACTCCGAGGATACTCATCAATATTATTATAAATGTCGTTTCATTGAACTTATAGTTAAAGAAGGTTATGATGAGTTATCCTACCTCCATAACTGTCAAATACAGGGCCTAGGTGTGCCCAGAGCAGGAGGGTGTCTGCAAATATGTCTGTTAGACTCTAATCATTCTGCATTCATTGGGGAGTTGAAAAAAGAAGAAGATGATCTATCATTTGCGGCTGATGGAGCCGGAAAGTTGTATTCGAAGCATATTTTACTGCACTTGGCCAAAGAAATGGAGCTGATAGGTTTAGACCCAAATAATGAAGGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box

Protein Analysis

200

Amino Acids

22.93

Weight (kDa)

4.79

Isoelectric Point (pI)

35.54

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006952)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g31431
rosa_chinensis	RchiOBHm_Chr1g0380481
rosa_laevigata	RLG00000001340 RLG00000002701 RLG00000026293 RLG00000026297
rosa_multiflora	Rmu_sc0000945.1_g000007 Rmu_sc0001733.1_g000007 Rmu_sc0006267.1_g000004
rosa_roxburghii	Rroxscaffold_3G00228330 Rroxscaffold_3G00228570 Rroxscaffold_3G00244720 Rroxscaffold_4G00279310 Rroxscaffold_4G00279330
rosa_rugosa	Rorug07G0270400
rosa_samantha	Rh1CG415600 Rh1DG431400 Rh7AG286300 Rh7AG425300 Rh7AG425800 Rh7DG289700 Rh7DG416900 Rh7DG417100
rosa_wichuraiana	Rw7G035160 Rw7G035250 Rw7G035290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	207, 318
AccB7I	CCANNNNNTGG	1 cut(s)	195
AciI	CCGC	1 cut(s)	503
AcoI	YGGCCR	1 cut(s)	552
AcsI	RAATTY	2 cut(s)	12, 56
AfaI	GTAC	1 cut(s)	277
AfiI	CCNNNNNNNGG	2 cut(s)	195, 413
AgsI	TTSAA	4 cut(s)	38, 61, 335, 475
AluBI	AGCT	1 cut(s)	568
AluI	AGCT	1 cut(s)	568
AlwNI	CAGNNNCTG	1 cut(s)	195
AoxI	GGCC	2 cut(s)	394, 552
ApoI	RAATTY	2 cut(s)	12, 56
AspA2I	CCTAGG	1 cut(s)	397
AspS9I	GGNCC	4 cut(s)	186, 226, 267, 394
AsuHPI	GGTGA	1 cut(s)	101
AsuII	TTCGAA	1 cut(s)	530
AvaII	GGWCC	3 cut(s)	186, 226, 267
AvrII	CCTAGG	1 cut(s)	397
BaeGI	GKGCMC	1 cut(s)	408
BalI	TGGCCA	1 cut(s)	554
BccI	CCATC	1 cut(s)	503
BciVI	GTATCC	1 cut(s)	292
BfaI	CTAG	2 cut(s)	279, 398
BfuI	GTATCC	1 cut(s)	292
BglII	AGATCT	1 cut(s)	69
BisI	GCNGC	1 cut(s)	504
BlnI	CCTAGG	1 cut(s)	397
BlsI	GCNGC	1 cut(s)	505
BmcAI	AGTACT	1 cut(s)	277
Bme18I	GGWCC	3 cut(s)	186, 226, 267
BmgT120I	GGNCC	4 cut(s)	186, 226, 267, 394
BmiI	GGNNCC	2 cut(s)	228, 514
BplI	GAGNNNNNCTC	2 cut(s)	59, 91
Bpu14I	TTCGAA	1 cut(s)	530
BsaBI	GATNNNNATC	1 cut(s)	303
BsaJI	CCNNGG	2 cut(s)	294, 397
Bsc4I	CCNNNNNNNGG	2 cut(s)	195, 413
Bse1I	ACTGG	2 cut(s)	189, 270
Bse8I	GATNNNNATC	1 cut(s)	303
BseDI	CCNNGG	2 cut(s)	294, 397
BseJI	GATNNNNATC	1 cut(s)	303
BseLI	CCNNNNNNNGG	2 cut(s)	195, 413
BseNI	ACTGG	2 cut(s)	189, 270
BseSI	GKGCMC	1 cut(s)	408
BsgI	GTGCAG	1 cut(s)	530
BshFI	GGCC	2 cut(s)	396, 554
BsiSI	CCGG	1 cut(s)	516
BslI	CCNNNNNNNGG	2 cut(s)	195, 413
BsmI	GAATGC	1 cut(s)	458
BsnI	GGCC	2 cut(s)	396, 554
Bsp119I	TTCGAA	1 cut(s)	530
Bsp1286I	GDGCHC	1 cut(s)	408
Bsp143I	GATC	3 cut(s)	43, 69, 490
BspACI	CCGC	1 cut(s)	503
BspANI	GGCC	2 cut(s)	396, 554
BspLI	GGNNCC	2 cut(s)	228, 514
BspT104I	TTCGAA	1 cut(s)	530
BsrI	ACTGG	2 cut(s)	189, 270
BssECI	CCNNGG	2 cut(s)	294, 397
BssMI	GATC	3 cut(s)	43, 69, 490
BssT1I	CCWWGG	1 cut(s)	397
Bst4CI	ACNGT	1 cut(s)	383
BstBI	TTCGAA	1 cut(s)	530
BstKTI	GATC	3 cut(s)	46, 72, 493
BstMBI	GATC	3 cut(s)	43, 69, 490
BstMWI	GCNNNNNNNGC	1 cut(s)	512
BstSLI	GKGCMC	1 cut(s)	408
BstX2I	RGATCY	1 cut(s)	69
BstXI	CCANNNNNNTGG	1 cut(s)	562
BstYI	RGATCY	1 cut(s)	69
BsuI	GTATCC	1 cut(s)	292
BsuRI	GGCC	2 cut(s)	396, 554
CaiI	CAGNNNCTG	1 cut(s)	195
Cfr13I	GGNCC	4 cut(s)	186, 226, 267, 394
Csp6I	GTAC	1 cut(s)	276
CviJI	RGCY	6 cut(s)	396, 506, 515, 554, 568, 597
CviKI_1	RGCY	6 cut(s)	396, 506, 515, 554, 568, 597
CviQI	GTAC	1 cut(s)	276
DpnI	GATC	3 cut(s)	45, 71, 492
DpnII	GATC	3 cut(s)	43, 69, 490
DraI	TTTAAA	1 cut(s)	130
EaeI	YGGCCR	1 cut(s)	552
Eco130I	CCWWGG	1 cut(s)	397
Eco32I	GATATC	1 cut(s)	142
Eco47I	GGWCC	3 cut(s)	186, 226, 267
EcoO109I	RGGNCCY	1 cut(s)	394
EcoRI	GAATTC	1 cut(s)	12
EcoRV	GATATC	1 cut(s)	142
EcoT14I	CCWWGG	1 cut(s)	397
ErhI	CCWWGG	1 cut(s)	397
FaiI	YATR	9 cut(s)	24, 207, 236, 318, 341, 357, 378, 433, 537
FalI	AAGNNNNNCTT	2 cut(s)	30, 62
Fnu4HI	GCNGC	1 cut(s)	504
Fsp4HI	GCNGC	1 cut(s)	504
FspBI	CTAG	2 cut(s)	279, 398
GluI	GCNGC	1 cut(s)	504
HaeIII	GGCC	2 cut(s)	396, 554
HapII	CCGG	1 cut(s)	516
HinfI	GANTC	2 cut(s)	101, 443
HpaII	CCGG	1 cut(s)	516
HphI	GGTGA	1 cut(s)	101
Hpy166II	GTNNAC	1 cut(s)	157
Hpy188I	TCNGA	2 cut(s)	216, 295
Hpy188III	TCNNGA	2 cut(s)	82, 265
Hpy8I	GTNNAC	1 cut(s)	157
HpyAV	CCTTC	2 cut(s)	344, 587
HpyCH4III	ACNGT	1 cut(s)	383
HpyCH4V	TGCA	3 cut(s)	427, 458, 547
HpyF10VI	GCNNNNNNNGC	1 cut(s)	512
Kzo9I	GATC	3 cut(s)	43, 69, 490
LmnI	GCTCC	2 cut(s)	512, 565
LpnPI	CCDG	8 cut(s)	181, 202, 250, 283, 377, 399, 421, 529
MaeI	CTAG	2 cut(s)	279, 398
MaeIII	GTNAC	1 cut(s)	287
MalI	GATC	3 cut(s)	45, 71, 492
MboI	GATC	3 cut(s)	43, 69, 490
MboII	GAAGA	5 cut(s)	50, 64, 135, 494, 497
MflI	RGATCY	1 cut(s)	69
MhlI	GDGCHC	1 cut(s)	408
MlsI	TGGCCA	1 cut(s)	554
MluCI	AATT	3 cut(s)	12, 56, 145
MluNI	TGGCCA	1 cut(s)	554
MlyI	GAGTC	2 cut(s)	110, 437
MmeI	TCCRAC	1 cut(s)	204
MnlI	CCTC	3 cut(s)	289, 383, 410
Mox20I	TGGCCA	1 cut(s)	554
MscI	TGGCCA	1 cut(s)	554
MseI	TTAA	3 cut(s)	129, 135, 345
Msp20I	TGGCCA	1 cut(s)	554
MspI	CCGG	1 cut(s)	516
Mva1269I	GAATGC	1 cut(s)	458
MwoI	GCNNNNNNNGC	1 cut(s)	512
NdeII	GATC	3 cut(s)	43, 69, 490
NlaIV	GGNNCC	2 cut(s)	228, 514
NspV	TTCGAA	1 cut(s)	530
PctI	GAATGC	1 cut(s)	458
PflMI	CCANNNNNTGG	1 cut(s)	195
PkrI	GCNGC	1 cut(s)	505
PleI	GAGTC	2 cut(s)	109, 437
PpsI	GAGTC	2 cut(s)	109, 437
PsiI	TTATAA	2 cut(s)	207, 318
PspN4I	GGNNCC	2 cut(s)	228, 514
PspPI	GGNCC	4 cut(s)	186, 226, 267, 394
PstNI	CAGNNNCTG	1 cut(s)	195
PsuI	RGATCY	1 cut(s)	69
RsaI	GTAC	1 cut(s)	277
RsaNI	GTAC	1 cut(s)	276
SaqAI	TTAA	3 cut(s)	129, 135, 345
SatI	GCNGC	1 cut(s)	504
Sau3AI	GATC	3 cut(s)	43, 69, 490
Sau96I	GGNCC	4 cut(s)	186, 226, 267, 394
ScaI	AGTACT	1 cut(s)	277
SchI	GAGTC	2 cut(s)	110, 437
SduI	GDGCHC	1 cut(s)	408
SetI	ASST	6 cut(s)	66, 355, 375, 403, 570, 577
SfuI	TTCGAA	1 cut(s)	530
SinI	GGWCC	3 cut(s)	186, 226, 267
Sse9I	AATT	3 cut(s)	12, 56, 145
SsiI	CCGC	1 cut(s)	503
SspI	AATATT	1 cut(s)	311
SspMI	CTAG	2 cut(s)	279, 398
StyI	CCWWGG	1 cut(s)	397
TaaI	ACNGT	1 cut(s)	383
TaqI	TCGA	2 cut(s)	81, 530
TasI	AATT	3 cut(s)	12, 56, 145
TatI	WGTACW	1 cut(s)	275
TauI	GCSGC	1 cut(s)	506
Tru1I	TTAA	3 cut(s)	129, 135, 345
Tru9I	TTAA	3 cut(s)	129, 135, 345
TspDTI	ATGAA	4 cut(s)	186, 223, 319, 451
Van91I	CCANNNNNTGG	1 cut(s)	195
VpaK11BI	GGWCC	3 cut(s)	186, 226, 267
XapI	RAATTY	2 cut(s)	12, 56
XmaJI	CCTAGG	1 cut(s)	397
XspI	CTAG	2 cut(s)	279, 398
ZrmI	AGTACT	1 cut(s)	277

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.