Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7A

Orthogroup ID

OG0006952

Physical Location & Seq

Genomic Coordinates Reverse (-)

57159797 .. 57161841

Gene Structure 2045 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7AG425300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1182 bp

ATGTCGGACCCATACTTCATTGGCCGCTTTCTACTTCGACTCCAAAGCCGACACACGACAATTCCACCACTTACTCTGATCAATCAAAAGGGGGAGAACTTCCCTATGGCATTCAATCCTCTTTCACCACTCAAGTTTCTAACTAGGATGTTCTTGAGACTCATGAATTCCCTCTCTTTGAAAAAAGAGCCAGTTGTAGTAGGGGCGTGTAATGACTTGGTTTTGTGTTGCGCAAGTGAGTATTTTCAACGTGATTACTTCATCTGTAATCCATATACCACCCAATGGGTTGCTCTTCCTCCTGTCTCTCGAGTTCTCCGTGACGTACCAGTTGGATTCATATGTGATCCCTACTATAATTATCATAAGAAAGAAGAGGAAGTGCATCAAACAAAAAGTACTATCATACAAGATAAGTTGATTAATATTAACGTGGACTATAGGTGCATGGTAGTGAGAATTCTTCCTTATGATGACACATTTGAAGATGAACTTTCCTACAAATTCAAGGTGGAGATCTTCTCTTTCGAGATTGGTGAATGGAGAGAGTCAATTATCTCATTCCCACAAAGATTTAAACTTGATGATATCGATTCCAATGTTCACTTTGCTTACAATGAAATGTTGTATTGGTCGAGTATGTGGGGAGATTATAACTTTCTGATTGGGTTGAACCCGTTCATGATCAGCGACGTCACTAATAACAACATCATCAGGACCAGTAGTACTAGCAATAGTAACTCCGGTGATAATCCTCAATATTACCCTAAATGTCGTTACATTGAACTCATAGTTAAAGACGCTAATTATGATGAGTTATCTTACTTCCATAACTGTCAAATACATGACGTAGTTGTGCACGGAGCCGGAGGGTATCTGCAAATATGTCTTTTAGACGTTGACCATTCTGCATTCATTTGGGAGTTAAAAAAAGAAGAAGATGATCTGATAATTGCGGCCGATGGAGCAGGAAAATTGTATTCGAAGCATCTTTTACCGCCTTTGGCCAAAGAAATGGAGCTGATTGGTTTAGACCCATATAATGTAGGGTGCTTATACCATAACTACCACAAGGTCCACAACAAATCAAGTAATTGCAAAACAAAGCATAAAGAGGCAAACTGCATCAATAATGAACTGAAATCATCTTTTCCAACATCAATACACGAAGGCATAAACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box

Protein Analysis

393

Amino Acids

45.62

Weight (kDa)

5.78

Isoelectric Point (pI)

38.05

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006952)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g31431
rosa_chinensis	RchiOBHm_Chr1g0380481
rosa_laevigata	RLG00000001340 RLG00000002701 RLG00000026293 RLG00000026297
rosa_multiflora	Rmu_sc0000945.1_g000007 Rmu_sc0001733.1_g000007 Rmu_sc0006267.1_g000004
rosa_roxburghii	Rroxscaffold_3G00228330 Rroxscaffold_3G00228570 Rroxscaffold_3G00244720 Rroxscaffold_4G00279310 Rroxscaffold_4G00279330
rosa_rugosa	Rorug07G0270400
rosa_samantha	Rh1CG415600 Rh1DG431400 Rh7AG286300 Rh7AG425300 Rh7AG425800 Rh7DG289700 Rh7DG416900 Rh7DG417100
rosa_wichuraiana	Rw7G035160 Rw7G035250 Rw7G035290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	654
AatII	GACGTC	1 cut(s)	696
Acc16I	TGCGCA	1 cut(s)	232
AccB7I	CCANNNNNTGG	1 cut(s)	285
AciI	CCGC	3 cut(s)	25, 956, 998
AclWI	GGATC	1 cut(s)	341
AcoI	YGGCCR	3 cut(s)	22, 957, 1005
AcsI	RAATTY	3 cut(s)	166, 459, 503
AcyI	GRCGYC	1 cut(s)	693
AfaI	GTAC	3 cut(s)	327, 400, 727
AfiI	CCNNNNNNNGG	1 cut(s)	285
AgsI	TTSAA	7 cut(s)	115, 181, 248, 485, 508, 673, 785
AluBI	AGCT	1 cut(s)	1021
AluI	AGCT	1 cut(s)	1021
Alw21I	GWGCWC	1 cut(s)	861
Alw26I	GTCTC	2 cut(s)	151, 310
Alw44I	GTGCAC	1 cut(s)	857
AlwI	GGATC	1 cut(s)	341
Ama87I	CYCGRG	1 cut(s)	309
AoxI	GGCC	3 cut(s)	22, 957, 1005
ApaLI	GTGCAC	1 cut(s)	857
ApoI	RAATTY	3 cut(s)	166, 459, 503
AseI	ATTAAT	1 cut(s)	423
Asp700I	GAANNNNTTC	1 cut(s)	677
AspLEI	GCGC	1 cut(s)	233
AspS9I	GGNCC	3 cut(s)	7, 717, 1075
AsuHPI	GGTGA	3 cut(s)	117, 548, 758
AsuII	TTCGAA	1 cut(s)	983
AvaI	CYCGRG	1 cut(s)	309
AvaII	GGWCC	3 cut(s)	7, 717, 1075
BaeGI	GKGCMC	1 cut(s)	861
BalI	TGGCCA	1 cut(s)	1007
Bbv12I	GWGCWC	1 cut(s)	861
BccI	CCATC	1 cut(s)	956
BclI	TGATCA	2 cut(s)	78, 684
BcoDI	GTCTC	2 cut(s)	151, 310
BfaI	CTAG	2 cut(s)	144, 729
BfmI	CTRYAG	1 cut(s)	439
BglII	AGATCT	1 cut(s)	516
BisI	GCNGC	2 cut(s)	25, 957
BlsI	GCNGC	2 cut(s)	26, 958
BmcAI	AGTACT	2 cut(s)	400, 727
Bme18I	GGWCC	3 cut(s)	7, 717, 1075
BmeT110I	CYCGRG	1 cut(s)	309
BmgT120I	GGNCC	3 cut(s)	7, 717, 1075
BmiI	GGNNCC	2 cut(s)	9, 865
BmsI	GCATC	3 cut(s)	394, 997, 1134
BplI	GAGNNNNNCTC	2 cut(s)	506, 538
Bpu14I	TTCGAA	1 cut(s)	983
BpuEI	CTTGAG	2 cut(s)	116, 175
Bsa29I	ATCGAT	1 cut(s)	591
BsaHI	GRCGYC	1 cut(s)	693
BsaWI	WCCGGW	1 cut(s)	743
BsaXI	ACNNNNNCTCC	2 cut(s)	24, 54
Bsc4I	CCNNNNNNNGG	1 cut(s)	285
Bse1I	ACTGG	3 cut(s)	191, 329, 720
BseCI	ATCGAT	1 cut(s)	591
BseGI	GGATG	1 cut(s)	153
BseLI	CCNNNNNNNGG	1 cut(s)	285
BseNI	ACTGG	3 cut(s)	191, 329, 720
BseSI	GKGCMC	1 cut(s)	861
BseX3I	CGGCCG	1 cut(s)	957
Bsh1285I	CGRYCG	1 cut(s)	960
BshFI	GGCC	3 cut(s)	24, 959, 1007
BshVI	ATCGAT	1 cut(s)	591
BsiEI	CGRYCG	1 cut(s)	960
BsiHKAI	GWGCWC	1 cut(s)	861
BsiHKCI	CYCGRG	1 cut(s)	309
BsiSI	CCGG	2 cut(s)	744, 867
BslI	CCNNNNNNNGG	1 cut(s)	285
BsmAI	GTCTC	2 cut(s)	151, 310
BsmI	GAATGC	2 cut(s)	110, 911
BsnI	GGCC	3 cut(s)	24, 959, 1007
BsoBI	CYCGRG	1 cut(s)	309
Bsp119I	TTCGAA	1 cut(s)	983
Bsp1286I	GDGCHC	1 cut(s)	861
Bsp143I	GATC	5 cut(s)	78, 346, 516, 684, 943
BspACI	CCGC	3 cut(s)	25, 956, 998
BspANI	GGCC	3 cut(s)	24, 959, 1007
BspDI	ATCGAT	1 cut(s)	591
BspHI	TCATGA	2 cut(s)	162, 681
BspLI	GGNNCC	2 cut(s)	9, 865
BspPI	GGATC	1 cut(s)	341
BspQI	GCTCTTC	1 cut(s)	300
BspT104I	TTCGAA	1 cut(s)	983
BsrI	ACTGG	3 cut(s)	191, 329, 720
BssMI	GATC	5 cut(s)	78, 346, 516, 684, 943
BssNI	GRCGYC	1 cut(s)	693
Bst4CI	ACNGT	1 cut(s)	836
Bst6I	CTCTTC	2 cut(s)	300, 369
BstACI	GRCGYC	1 cut(s)	693
BstBI	TTCGAA	1 cut(s)	983
BstF5I	GGATG	1 cut(s)	153
BstHHI	GCGC	1 cut(s)	233
BstKTI	GATC	5 cut(s)	81, 349, 519, 687, 946
BstMAI	GTCTC	2 cut(s)	151, 310
BstMBI	GATC	5 cut(s)	78, 346, 516, 684, 943
BstMCI	CGRYCG	1 cut(s)	960
BstMWI	GCNNNNNNNGC	1 cut(s)	965
BstSFI	CTRYAG	1 cut(s)	439
BstSLI	GKGCMC	1 cut(s)	861
BstX2I	RGATCY	1 cut(s)	516
BstXI	CCANNNNNNTGG	1 cut(s)	1015
BstYI	RGATCY	1 cut(s)	516
BstZI	CGGCCG	1 cut(s)	957
Bsu15I	ATCGAT	1 cut(s)	591
BsuRI	GGCC	3 cut(s)	24, 959, 1007
BsuTUI	ATCGAT	1 cut(s)	591
BtsCI	GGATG	1 cut(s)	153
CciI	TCATGA	2 cut(s)	162, 681
CfoI	GCGC	1 cut(s)	233
Cfr13I	GGNCC	3 cut(s)	7, 717, 1075
ClaI	ATCGAT	1 cut(s)	591
CseI	GACGC	1 cut(s)	809
Csp6I	GTAC	3 cut(s)	326, 399, 726
CviAII	CATG	4 cut(s)	163, 448, 682, 845
CviJI	RGCY	7 cut(s)	24, 48, 190, 866, 959, 1007, 1021
CviKI_1	RGCY	7 cut(s)	24, 48, 190, 866, 959, 1007, 1021
CviQI	GTAC	3 cut(s)	326, 399, 726
DpnI	GATC	5 cut(s)	80, 348, 518, 686, 945
DpnII	GATC	5 cut(s)	78, 346, 516, 684, 943
DraI	TTTAAA	1 cut(s)	577
EaeI	YGGCCR	3 cut(s)	22, 957, 1005
EagI	CGGCCG	1 cut(s)	957
Eam1104I	CTCTTC	2 cut(s)	300, 369
EarI	CTCTTC	2 cut(s)	300, 369
EclXI	CGGCCG	1 cut(s)	957
Eco32I	GATATC	1 cut(s)	589
Eco47I	GGWCC	3 cut(s)	7, 717, 1075
Eco52I	CGGCCG	1 cut(s)	957
Eco88I	CYCGRG	1 cut(s)	309
EcoRI	GAATTC	2 cut(s)	166, 459
EcoRV	GATATC	1 cut(s)	589
FaeI	CATG	4 cut(s)	166, 451, 685, 848
FalI	AAGNNNNNCTT	2 cut(s)	477, 509
FatI	CATG	4 cut(s)	162, 447, 681, 844
FauNDI	CATATG	1 cut(s)	341
FbaI	TGATCA	2 cut(s)	78, 684
Fnu4HI	GCNGC	2 cut(s)	25, 957
FokI	GGATG	1 cut(s)	160
Fsp4HI	GCNGC	2 cut(s)	25, 957
FspBI	CTAG	2 cut(s)	144, 729
FspI	TGCGCA	1 cut(s)	232
GlaI	GCGC	1 cut(s)	232
GluI	GCNGC	2 cut(s)	25, 957
HaeIII	GGCC	3 cut(s)	24, 959, 1007
HapII	CCGG	2 cut(s)	744, 867
HgaI	GACGC	1 cut(s)	809
HhaI	GCGC	1 cut(s)	233
Hin1I	GRCGYC	1 cut(s)	693
Hin1II	CATG	4 cut(s)	166, 451, 685, 848
Hin6I	GCGC	1 cut(s)	231
HinP1I	GCGC	1 cut(s)	231
HincII	GTYRAC	1 cut(s)	901
HindII	GTYRAC	1 cut(s)	901
HinfI	GANTC	5 cut(s)	39, 159, 336, 548, 593
HpaII	CCGG	2 cut(s)	744, 867
HphI	GGTGA	3 cut(s)	117, 548, 758
Hpy166II	GTNNAC	5 cut(s)	436, 604, 859, 901, 1078
Hpy188I	TCNGA	4 cut(s)	7, 78, 663, 948
Hpy188III	TCNNGA	6 cut(s)	154, 163, 309, 529, 682, 715
Hpy8I	GTNNAC	5 cut(s)	436, 604, 859, 901, 1078
Hpy99I	CGWCG	1 cut(s)	695
HpyAV	CCTTC	1 cut(s)	1163
HpyCH4III	ACNGT	1 cut(s)	836
HpyCH4IV	ACGT	6 cut(s)	250, 324, 432, 693, 849, 897
HpyCH4V	TGCA	7 cut(s)	385, 447, 859, 880, 911, 1098, 1125
HpyF10VI	GCNNNNNNNGC	1 cut(s)	965
HpySE526I	ACGT	6 cut(s)	250, 324, 432, 693, 849, 897
Hsp92I	GRCGYC	1 cut(s)	693
Hsp92II	CATG	4 cut(s)	166, 451, 685, 848
HspAI	GCGC	1 cut(s)	231
Ksp22I	TGATCA	2 cut(s)	78, 684
Kzo9I	GATC	5 cut(s)	78, 346, 516, 684, 943
LguI	GCTCTTC	1 cut(s)	300
LmnI	GCTCC	3 cut(s)	863, 965, 1018
LpnPI	CCDG	8 cut(s)	204, 315, 342, 700, 733, 757, 880, 954
LweI	GCATC	3 cut(s)	394, 997, 1134
MaeI	CTAG	2 cut(s)	144, 729
MaeII	ACGT	6 cut(s)	250, 324, 432, 693, 849, 897
MaeIII	GTNAC	4 cut(s)	320, 694, 737, 776
MalI	GATC	5 cut(s)	80, 348, 518, 686, 945
MboI	GATC	5 cut(s)	78, 346, 516, 684, 943
MboII	GAAGA	7 cut(s)	287, 386, 455, 497, 511, 947, 950
MflI	RGATCY	1 cut(s)	516
MhlI	GDGCHC	1 cut(s)	861
MlsI	TGGCCA	1 cut(s)	1007
MluNI	TGGCCA	1 cut(s)	1007
MlyI	GAGTC	3 cut(s)	33, 153, 557
MmeI	TCCRAC	2 cut(s)	313, 1178
MnlI	CCTC	7 cut(s)	129, 182, 309, 370, 765, 863, 1108
Mox20I	TGGCCA	1 cut(s)	1007
MroXI	GAANNNNTTC	1 cut(s)	677
MscI	TGGCCA	1 cut(s)	1007
MseI	TTAA	5 cut(s)	423, 429, 576, 795, 926
MslI	CAYNNNNRTG	1 cut(s)	452
Msp20I	TGGCCA	1 cut(s)	1007
MspI	CCGG	2 cut(s)	744, 867
Mva1269I	GAATGC	2 cut(s)	110, 911
MwoI	GCNNNNNNNGC	1 cut(s)	965
NdeI	CATATG	1 cut(s)	341
NdeII	GATC	5 cut(s)	78, 346, 516, 684, 943
NlaIII	CATG	4 cut(s)	166, 451, 685, 848
NlaIV	GGNNCC	2 cut(s)	9, 865
NmuCI	GTSAC	2 cut(s)	320, 694
NsbI	TGCGCA	1 cut(s)	232
NspV	TTCGAA	1 cut(s)	983
PaeR7I	CTCGAG	1 cut(s)	309
PagI	TCATGA	2 cut(s)	162, 681
PciSI	GCTCTTC	1 cut(s)	300
PcsI	WCGNNNNNNNCGW	1 cut(s)	316
PctI	GAATGC	2 cut(s)	110, 911
PdmI	GAANNNNTTC	1 cut(s)	677
PfeI	GAWTC	2 cut(s)	336, 593
PflMI	CCANNNNNTGG	1 cut(s)	285
PkrI	GCNGC	2 cut(s)	26, 958
PleI	GAGTC	3 cut(s)	33, 153, 556
PpsI	GAGTC	3 cut(s)	33, 153, 556
PshBI	ATTAAT	1 cut(s)	423
PsiI	TTATAA	1 cut(s)	654
PspN4I	GGNNCC	2 cut(s)	9, 865
PspPI	GGNCC	3 cut(s)	7, 717, 1075
PsuI	RGATCY	1 cut(s)	516
RsaI	GTAC	3 cut(s)	327, 400, 727
RsaNI	GTAC	3 cut(s)	326, 399, 726
RseI	CAYNNNNRTG	1 cut(s)	452
SapI	GCTCTTC	1 cut(s)	300
SaqAI	TTAA	5 cut(s)	423, 429, 576, 795, 926
SatI	GCNGC	2 cut(s)	25, 957
Sau3AI	GATC	5 cut(s)	78, 346, 516, 684, 943
Sau96I	GGNCC	3 cut(s)	7, 717, 1075
ScaI	AGTACT	2 cut(s)	400, 727
SchI	GAGTC	3 cut(s)	33, 153, 557
SduI	GDGCHC	1 cut(s)	861
SfaNI	GCATC	3 cut(s)	394, 997, 1134
SfcI	CTRYAG	1 cut(s)	439
Sfr274I	CTCGAG	1 cut(s)	309
SfuI	TTCGAA	1 cut(s)	983
SinI	GGWCC	3 cut(s)	7, 717, 1075
SlaI	CTCGAG	1 cut(s)	309
SmiMI	CAYNNNNRTG	1 cut(s)	452
SmlI	CTYRAG	3 cut(s)	131, 154, 309
SmoI	CTYRAG	3 cut(s)	131, 154, 309
SsiI	CCGC	3 cut(s)	25, 956, 998
SspI	AATATT	2 cut(s)	427, 761
SspMI	CTAG	2 cut(s)	144, 729
TaaI	ACNGT	1 cut(s)	836
TaiI	ACGT	6 cut(s)	253, 327, 435, 696, 852, 900
TaqI	TCGA	6 cut(s)	37, 310, 528, 591, 635, 983
TatI	WGTACW	2 cut(s)	398, 725
TauI	GCSGC	2 cut(s)	27, 959
TfiI	GAWTC	2 cut(s)	336, 593
Tru1I	TTAA	5 cut(s)	423, 429, 576, 795, 926
Tru9I	TTAA	5 cut(s)	423, 429, 576, 795, 926
TseFI	GTSAC	2 cut(s)	320, 694
Tsp45I	GTSAC	2 cut(s)	320, 694
TspDTI	ATGAA	9 cut(s)	7, 179, 250, 328, 504, 633, 670, 904, 1149
TspGWI	ACGGA	2 cut(s)	308, 876
Van91I	CCANNNNNTGG	1 cut(s)	285
VneI	GTGCAC	1 cut(s)	857
VpaK11BI	GGWCC	3 cut(s)	7, 717, 1075
VspI	ATTAAT	1 cut(s)	423
XapI	RAATTY	3 cut(s)	166, 459, 503
XhoI	CTCGAG	1 cut(s)	309
XmnI	GAANNNNTTC	1 cut(s)	677
XspI	CTAG	2 cut(s)	144, 729
ZraI	GACGTC	1 cut(s)	694
ZrmI	AGTACT	2 cut(s)	400, 727

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.