Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7A

Orthogroup ID

OG0006952

Physical Location & Seq

Genomic Coordinates Reverse (-)

57202785 .. 57204125

Gene Structure 1341 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7AG425800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1341 bp

ATGAATAACACTATTGATGATCTCCCTGATGTTGTATTGGTTGACATTCTTAGTCGACTTCCGTGCTTTGATTTTGTGTTAAAATGCAAGTCTGTGTGCAAACGTTGGAGCATTCTCATGTCGGACCCATACTTCATTGGCCGCTTTCTACTTCGACTCCAAAGCCGACATACGCCAATTCCACCACTTACTCTGATCAATAAAAAAGGGGAGAACTTCCCTATGGCATTCAATCCTCTTTCACCGCTCAAGTTTCTAACTAGGATGTTCTTAAGACTCATGAGTTCCCTCTCTTTGAAAAAAGAGCCAGTTGTAGTAGGGGCGTGTAATGACCTAGTTTTGTGTTGCGCAAGCGAGTATTTTCAACGTGATTACTTCATCTGTAATCCATATACTACCCAATGGGTTGCTCTTCCTCCTGTCTCTCGAGTTCTCCGTGACGTACCAGTTGGATTCATATGTGATCCCTACTATAATTATCATAAGAAAGAAGAGGAAGTGCATCAACCAAAAAGTACTTTCATACAAGATAAGTTGATTAATATTAACGTGGACTATAGGTGCATGGTAGTGAGAATTCTCCCTTATGATGACACATTTGAAGATGATCTTTCCTACAAATTCAAGGTGGAGATCTTCTCTTTTGAGATTGGTGAATGGAGAGAGTCAATTATCTCATTCCCACAAAGATTTACACTTAATGATATCAATTCCGATGTTCACTTTGCTCACAATGAAATGCTGTATTGGTCGAGTATCTGGGGACATCATAACTTTCTGATTGGGTTGAACCCGTTCATGATCAGCGACGTCACGAATAACATTAGGACCAGTAGTACTAGCAATAGTAACTCCGATGATAATCATCAATATTACTATAAATGTCGTTACATTGAACTCGTAGTTAAAGACGCTTATTATGATGAGTTATCTTACCTCCATAAAAGGCAACTACAGGGCGTACTTGTGCACGGAGCCGGAGGGTGTCTGCAAATATGTCTTTTAGACGCTGAACATTCTGCATTCATTTGGGAAGTGAAAAAAGAAGAAGATGATCTGATGATTGCGGCCGATGGAGCAGGAAAATTGCATGCGAAGCATCTTTTACTGCCTTTGGCCAAAGAAATGGAGCTGATTGCTTTAGACCCAAATAATGAAGGCTACTTATATGTAAGACTCAACGGATCCCTTTTTGAACTTATAAACCTTCGTAGAAGCTTGTTATGCGAGATGAACATGCCTGAAAGGGGTCGAATTATTAGTAACTATTGCTTCTTCCCATTAAAAGCGAAACCATGGTGGCCAACACCAGTTCCCAGAATACCTCACCCATCAGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box

Protein Analysis

446

Amino Acids

51.91

Weight (kDa)

6.28

Isoelectric Point (pI)

44.22

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
F-box	PF00646	5 - 45	4.5e-07	F-box domain
F-box-like	PF12937	5 - 45	4e-07	F-box-like

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006952)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g31431
rosa_chinensis	RchiOBHm_Chr1g0380481
rosa_laevigata	RLG00000001340 RLG00000002701 RLG00000026293 RLG00000026297
rosa_multiflora	Rmu_sc0000945.1_g000007 Rmu_sc0001733.1_g000007 Rmu_sc0006267.1_g000004
rosa_roxburghii	Rroxscaffold_3G00228330 Rroxscaffold_3G00228570 Rroxscaffold_3G00244720 Rroxscaffold_4G00279310 Rroxscaffold_4G00279330
rosa_rugosa	Rorug07G0270400
rosa_samantha	Rh1CG415600 Rh1DG431400 Rh7AG286300 Rh7AG425300 Rh7AG425800 Rh7DG289700 Rh7DG416900 Rh7DG417100
rosa_wichuraiana	Rw7G035160 Rw7G035250 Rw7G035290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1202
AatII	GACGTC	1 cut(s)	813
Acc16I	TGCGCA	1 cut(s)	349
AccBSI	CCGCTC	1 cut(s)	247
AccI	GTMKAC	1 cut(s)	55
AciI	CCGC	3 cut(s)	142, 245, 1067
AclI	AACGTT	1 cut(s)	103
AclWI	GGATC	3 cut(s)	458, 1179, 1192
AcoI	YGGCCR	4 cut(s)	139, 1068, 1116, 1301
AcsI	RAATTY	2 cut(s)	576, 620
AcyI	GRCGYC	1 cut(s)	810
AfaI	GTAC	4 cut(s)	444, 517, 838, 963
AfiI	CCNNNNNNNGG	1 cut(s)	1247
AflII	CTTAAG	1 cut(s)	271
AgsI	TTSAA	8 cut(s)	232, 298, 365, 602, 625, 790, 896, 1196
AluBI	AGCT	3 cut(s)	1132, 1218, 1337
AluI	AGCT	3 cut(s)	1132, 1218, 1337
Alw21I	GWGCWC	1 cut(s)	972
Alw26I	GTCTC	1 cut(s)	427
Alw44I	GTGCAC	1 cut(s)	968
AlwI	GGATC	3 cut(s)	458, 1179, 1192
Ama87I	CYCGRG	1 cut(s)	426
AoxI	GGCC	4 cut(s)	139, 1068, 1116, 1301
ApaLI	GTGCAC	1 cut(s)	968
ApoI	RAATTY	2 cut(s)	576, 620
AseI	ATTAAT	1 cut(s)	540
Asp700I	GAANNNNTTC	1 cut(s)	794
AspLEI	GCGC	1 cut(s)	350
AspS9I	GGNCC	2 cut(s)	124, 828
AsuHPI	GGTGA	3 cut(s)	234, 665, 1319
AvaI	CYCGRG	1 cut(s)	426
AvaII	GGWCC	2 cut(s)	124, 828
BaeGI	GKGCMC	1 cut(s)	972
BalI	TGGCCA	2 cut(s)	1118, 1303
BamHI	GGATCC	1 cut(s)	1184
Bbv12I	GWGCWC	1 cut(s)	972
BccI	CCATC	2 cut(s)	1067, 1339
BcgI	CGANNNNNNTGC	2 cut(s)	45, 79
BclI	TGATCA	2 cut(s)	195, 801
BcoDI	GTCTC	1 cut(s)	427
BfaI	CTAG	3 cut(s)	261, 335, 840
BfmI	CTRYAG	2 cut(s)	556, 953
BfrI	CTTAAG	1 cut(s)	271
BglII	AGATCT	1 cut(s)	633
BisI	GCNGC	2 cut(s)	142, 1068
BlsI	GCNGC	2 cut(s)	143, 1069
BmcAI	AGTACT	2 cut(s)	517, 838
Bme18I	GGWCC	2 cut(s)	124, 828
BmeT110I	CYCGRG	1 cut(s)	426
BmgT120I	GGNCC	2 cut(s)	124, 828
BmiI	GGNNCC	3 cut(s)	126, 976, 1186
BmsI	GCATC	2 cut(s)	511, 1108
BplI	GAGNNNNNCTC	2 cut(s)	623, 655
BpuEI	CTTGAG	1 cut(s)	233
BsaBI	GATNNNNATC	2 cut(s)	861, 864
BsaHI	GRCGYC	1 cut(s)	810
BsaJI	CCNNGG	1 cut(s)	1295
BsaXI	ACNNNNNCTCC	2 cut(s)	141, 171
Bsc4I	CCNNNNNNNGG	1 cut(s)	1247
Bse1I	ACTGG	4 cut(s)	308, 446, 831, 1310
Bse8I	GATNNNNATC	2 cut(s)	861, 864
BseDI	CCNNGG	1 cut(s)	1295
BseGI	GGATG	1 cut(s)	270
BseJI	GATNNNNATC	2 cut(s)	861, 864
BseLI	CCNNNNNNNGG	1 cut(s)	1247
BseNI	ACTGG	4 cut(s)	308, 446, 831, 1310
BseSI	GKGCMC	1 cut(s)	972
BseX3I	CGGCCG	1 cut(s)	1068
Bsh1285I	CGRYCG	1 cut(s)	1071
BshFI	GGCC	4 cut(s)	141, 1070, 1118, 1303
BsiEI	CGRYCG	1 cut(s)	1071
BsiHKAI	GWGCWC	1 cut(s)	972
BsiHKCI	CYCGRG	1 cut(s)	426
BsiSI	CCGG	1 cut(s)	978
BslFI	GGGAC	1 cut(s)	777
BslI	CCNNNNNNNGG	1 cut(s)	1247
BsmAI	GTCTC	1 cut(s)	427
BsmFI	GGGAC	1 cut(s)	777
BsmI	GAATGC	3 cut(s)	111, 227, 1022
BsnI	GGCC	4 cut(s)	141, 1070, 1118, 1303
BsoBI	CYCGRG	1 cut(s)	426
Bsp1286I	GDGCHC	1 cut(s)	972
Bsp143I	GATC	8 cut(s)	19, 195, 463, 607, 633, 801, 1054, 1184
Bsp19I	CCATGG	1 cut(s)	1295
BspACI	CCGC	3 cut(s)	142, 245, 1067
BspANI	GGCC	4 cut(s)	141, 1070, 1118, 1303
BspHI	TCATGA	2 cut(s)	279, 798
BspLI	GGNNCC	3 cut(s)	126, 976, 1186
BspPI	GGATC	3 cut(s)	458, 1179, 1192
BspQI	GCTCTTC	1 cut(s)	417
BspTI	CTTAAG	1 cut(s)	271
BsrBI	CCGCTC	1 cut(s)	247
BsrI	ACTGG	4 cut(s)	308, 446, 831, 1310
BssECI	CCNNGG	1 cut(s)	1295
BssMI	GATC	8 cut(s)	19, 195, 463, 607, 633, 801, 1054, 1184
BssNI	GRCGYC	1 cut(s)	810
BssT1I	CCWWGG	1 cut(s)	1295
Bst6I	CTCTTC	2 cut(s)	417, 486
BstACI	GRCGYC	1 cut(s)	810
BstAFI	CTTAAG	1 cut(s)	271
BstC8I	GCNNGC	2 cut(s)	352, 1092
BstDEI	CTNAG	1 cut(s)	50
BstDSI	CCRYGG	1 cut(s)	1295
BstF5I	GGATG	1 cut(s)	270
BstHHI	GCGC	1 cut(s)	350
BstKTI	GATC	8 cut(s)	22, 198, 466, 610, 636, 804, 1057, 1187
BstMAI	GTCTC	1 cut(s)	427
BstMBI	GATC	8 cut(s)	19, 195, 463, 607, 633, 801, 1054, 1184
BstMCI	CGRYCG	1 cut(s)	1071
BstMWI	GCNNNNNNNGC	3 cut(s)	1076, 1096, 1224
BstNSI	RCATGY	2 cut(s)	1094, 1240
BstSFI	CTRYAG	2 cut(s)	556, 953
BstSLI	GKGCMC	1 cut(s)	972
BstX2I	RGATCY	2 cut(s)	633, 1184
BstXI	CCANNNNNNTGG	1 cut(s)	1126
BstYI	RGATCY	2 cut(s)	633, 1184
BstZI	CGGCCG	1 cut(s)	1068
BsuRI	GGCC	4 cut(s)	141, 1070, 1118, 1303
BtgI	CCRYGG	1 cut(s)	1295
BtsCI	GGATG	1 cut(s)	270
Cac8I	GCNNGC	2 cut(s)	352, 1092
CciI	TCATGA	2 cut(s)	279, 798
CfoI	GCGC	1 cut(s)	350
Cfr13I	GGNCC	2 cut(s)	124, 828
CseI	GACGC	2 cut(s)	920, 1016
Csp6I	GTAC	4 cut(s)	443, 516, 837, 962
CviAII	CATG	7 cut(s)	118, 280, 565, 799, 1091, 1237, 1296
CviQI	GTAC	4 cut(s)	443, 516, 837, 962
DdeI	CTNAG	1 cut(s)	50
DpnI	GATC	8 cut(s)	21, 197, 465, 609, 635, 803, 1056, 1186
DpnII	GATC	8 cut(s)	19, 195, 463, 607, 633, 801, 1054, 1184
EaeI	YGGCCR	4 cut(s)	139, 1068, 1116, 1301
EagI	CGGCCG	1 cut(s)	1068
Eam1104I	CTCTTC	2 cut(s)	417, 486
EarI	CTCTTC	2 cut(s)	417, 486
EclXI	CGGCCG	1 cut(s)	1068
Eco130I	CCWWGG	1 cut(s)	1295
Eco32I	GATATC	1 cut(s)	706
Eco47I	GGWCC	2 cut(s)	124, 828
Eco52I	CGGCCG	1 cut(s)	1068
Eco88I	CYCGRG	1 cut(s)	426
EcoRI	GAATTC	1 cut(s)	576
EcoRV	GATATC	1 cut(s)	706
EcoT14I	CCWWGG	1 cut(s)	1295
ErhI	CCWWGG	1 cut(s)	1295
FaeI	CATG	7 cut(s)	121, 283, 568, 802, 1094, 1240, 1299
FalI	AAGNNNNNCTT	2 cut(s)	594, 626
FaqI	GGGAC	1 cut(s)	777
FatI	CATG	7 cut(s)	117, 279, 564, 798, 1090, 1236, 1295
FauNDI	CATATG	1 cut(s)	458
FbaI	TGATCA	2 cut(s)	195, 801
FblI	GTMKAC	1 cut(s)	55
Fnu4HI	GCNGC	2 cut(s)	142, 1068
FokI	GGATG	1 cut(s)	277
Fsp4HI	GCNGC	2 cut(s)	142, 1068
FspBI	CTAG	3 cut(s)	261, 335, 840
FspI	TGCGCA	1 cut(s)	349
GlaI	GCGC	1 cut(s)	349
GluI	GCNGC	2 cut(s)	142, 1068
HaeIII	GGCC	4 cut(s)	141, 1070, 1118, 1303
HapII	CCGG	1 cut(s)	978
HgaI	GACGC	2 cut(s)	920, 1016
HhaI	GCGC	1 cut(s)	350
Hin1I	GRCGYC	1 cut(s)	810
Hin1II	CATG	7 cut(s)	121, 283, 568, 802, 1094, 1240, 1299
Hin6I	GCGC	1 cut(s)	348
HinP1I	GCGC	1 cut(s)	348
HincII	GTYRAC	2 cut(s)	43, 56
HindII	GTYRAC	2 cut(s)	43, 56
HindIII	AAGCTT	1 cut(s)	1216
HinfI	GANTC	5 cut(s)	156, 276, 453, 665, 1176
HpaII	CCGG	1 cut(s)	978
HphI	GGTGA	3 cut(s)	234, 665, 1319
Hpy166II	GTNNAC	5 cut(s)	43, 56, 553, 721, 970
Hpy188I	TCNGA	6 cut(s)	124, 195, 715, 780, 856, 1059
Hpy188III	TCNNGA	4 cut(s)	280, 426, 799, 814
Hpy8I	GTNNAC	5 cut(s)	43, 56, 553, 721, 970
Hpy99I	CGWCG	1 cut(s)	812
HpyAV	CCTTC	2 cut(s)	1151, 1217
HpyCH4IV	ACGT	5 cut(s)	103, 367, 441, 549, 810
HpyCH4V	TGCA	8 cut(s)	87, 99, 502, 564, 970, 991, 1022, 1090
HpyF10VI	GCNNNNNNNGC	3 cut(s)	1076, 1096, 1224
HpyF3I	CTNAG	1 cut(s)	50
HpySE526I	ACGT	5 cut(s)	103, 367, 441, 549, 810
Hsp92I	GRCGYC	1 cut(s)	810
Hsp92II	CATG	7 cut(s)	121, 283, 568, 802, 1094, 1240, 1299
HspAI	GCGC	1 cut(s)	348
Ksp22I	TGATCA	2 cut(s)	195, 801
Kzo9I	GATC	8 cut(s)	19, 195, 463, 607, 633, 801, 1054, 1184
LguI	GCTCTTC	1 cut(s)	417
LmnI	GCTCC	4 cut(s)	108, 974, 1076, 1129
LweI	GCATC	2 cut(s)	511, 1108
MaeI	CTAG	3 cut(s)	261, 335, 840
MaeII	ACGT	5 cut(s)	103, 367, 441, 549, 810
MaeIII	GTNAC	5 cut(s)	437, 811, 848, 887, 1262
MalI	GATC	8 cut(s)	21, 197, 465, 609, 635, 803, 1056, 1186
MbiI	CCGCTC	1 cut(s)	247
MboI	GATC	8 cut(s)	19, 195, 463, 607, 633, 801, 1054, 1184
MboII	GAAGA	7 cut(s)	404, 503, 614, 628, 1058, 1061, 1267
MflI	RGATCY	2 cut(s)	633, 1184
MhlI	GDGCHC	1 cut(s)	972
MlsI	TGGCCA	2 cut(s)	1118, 1303
MluCI	AATT	8 cut(s)	177, 475, 576, 620, 669, 709, 1085, 1254
MluNI	TGGCCA	2 cut(s)	1118, 1303
MlyI	GAGTC	4 cut(s)	150, 270, 674, 1170
MmeI	TCCRAC	3 cut(s)	86, 102, 430
MnlI	CCTC	7 cut(s)	246, 299, 426, 487, 947, 974, 1335
Mox20I	TGGCCA	2 cut(s)	1118, 1303
MroXI	GAANNNNTTC	1 cut(s)	794
MscI	TGGCCA	2 cut(s)	1118, 1303
MseI	TTAA	7 cut(s)	80, 272, 540, 546, 699, 906, 1283
MslI	CAYNNNNRTG	2 cut(s)	116, 569
Msp20I	TGGCCA	2 cut(s)	1118, 1303
MspCI	CTTAAG	1 cut(s)	271
MspI	CCGG	1 cut(s)	978
Mva1269I	GAATGC	3 cut(s)	111, 227, 1022
MwoI	GCNNNNNNNGC	3 cut(s)	1076, 1096, 1224
NcoI	CCATGG	1 cut(s)	1295
NdeI	CATATG	1 cut(s)	458
NdeII	GATC	8 cut(s)	19, 195, 463, 607, 633, 801, 1054, 1184
NlaIII	CATG	7 cut(s)	121, 283, 568, 802, 1094, 1240, 1299
NlaIV	GGNNCC	3 cut(s)	126, 976, 1186
NmuCI	GTSAC	2 cut(s)	437, 811
NsbI	TGCGCA	1 cut(s)	349
NspI	RCATGY	2 cut(s)	1094, 1240
PaeI	GCATGC	1 cut(s)	1094
PaeR7I	CTCGAG	1 cut(s)	426
PagI	TCATGA	2 cut(s)	279, 798
PciSI	GCTCTTC	1 cut(s)	417
PcsI	WCGNNNNNNNCGW	1 cut(s)	433
PctI	GAATGC	3 cut(s)	111, 227, 1022
PdmI	GAANNNNTTC	1 cut(s)	794
PfeI	GAWTC	1 cut(s)	453
PkrI	GCNGC	2 cut(s)	143, 1069
PleI	GAGTC	4 cut(s)	150, 270, 673, 1170
PpsI	GAGTC	4 cut(s)	150, 270, 673, 1170
PshBI	ATTAAT	1 cut(s)	540
PsiI	TTATAA	1 cut(s)	1202
Psp1406I	AACGTT	1 cut(s)	103
PspN4I	GGNNCC	3 cut(s)	126, 976, 1186
PspPI	GGNCC	2 cut(s)	124, 828
PsuI	RGATCY	2 cut(s)	633, 1184
RsaI	GTAC	4 cut(s)	444, 517, 838, 963
RsaNI	GTAC	4 cut(s)	443, 516, 837, 962
RseI	CAYNNNNRTG	2 cut(s)	116, 569
SalI	GTCGAC	1 cut(s)	54
SapI	GCTCTTC	1 cut(s)	417
SaqAI	TTAA	7 cut(s)	80, 272, 540, 546, 699, 906, 1283
SatI	GCNGC	2 cut(s)	142, 1068
Sau3AI	GATC	8 cut(s)	19, 195, 463, 607, 633, 801, 1054, 1184
Sau96I	GGNCC	2 cut(s)	124, 828
ScaI	AGTACT	2 cut(s)	517, 838
SchI	GAGTC	4 cut(s)	150, 270, 674, 1170
SduI	GDGCHC	1 cut(s)	972
SfaNI	GCATC	2 cut(s)	511, 1108
SfcI	CTRYAG	2 cut(s)	556, 953
Sfr274I	CTCGAG	1 cut(s)	426
SinI	GGWCC	2 cut(s)	124, 828
SlaI	CTCGAG	1 cut(s)	426
SmiMI	CAYNNNNRTG	2 cut(s)	116, 569
SmlI	CTYRAG	3 cut(s)	248, 271, 426
SmoI	CTYRAG	3 cut(s)	248, 271, 426
SphI	GCATGC	1 cut(s)	1094
Sse9I	AATT	8 cut(s)	177, 475, 576, 620, 669, 709, 1085, 1254
SsiI	CCGC	3 cut(s)	142, 245, 1067
SspI	AATATT	2 cut(s)	544, 872
SspMI	CTAG	3 cut(s)	261, 335, 840
StyI	CCWWGG	1 cut(s)	1295
TaiI	ACGT	5 cut(s)	106, 370, 444, 552, 813
TaqI	TCGA	5 cut(s)	55, 154, 427, 752, 1252
TasI	AATT	8 cut(s)	177, 475, 576, 620, 669, 709, 1085, 1254
TatI	WGTACW	2 cut(s)	515, 836
TauI	GCSGC	2 cut(s)	144, 1070
TfiI	GAWTC	1 cut(s)	453
Tru1I	TTAA	7 cut(s)	80, 272, 540, 546, 699, 906, 1283
Tru9I	TTAA	7 cut(s)	80, 272, 540, 546, 699, 906, 1283
TseFI	GTSAC	2 cut(s)	437, 811
Tsp45I	GTSAC	2 cut(s)	437, 811
TspGWI	ACGGA	4 cut(s)	51, 425, 987, 1197
Vha464I	CTTAAG	1 cut(s)	271
VneI	GTGCAC	1 cut(s)	968
VpaK11BI	GGWCC	2 cut(s)	124, 828
VspI	ATTAAT	1 cut(s)	540
XapI	RAATTY	2 cut(s)	576, 620
XceI	RCATGY	2 cut(s)	1094, 1240
XhoI	CTCGAG	1 cut(s)	426
XmiI	GTMKAC	1 cut(s)	55
XmnI	GAANNNNTTC	1 cut(s)	794
XspI	CTAG	3 cut(s)	261, 335, 840
ZraI	GACGTC	1 cut(s)	811
ZrmI	AGTACT	2 cut(s)	517, 838

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.