Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0006952

Physical Location & Seq

Genomic Coordinates Reverse (-)

12703123 .. 12709338

Gene Structure 6216 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00228330.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 477 bp

ATGGATACGTGCACGAAGTGCATCAACCAAAAAAGTACTATCCTGCAAGATCAGTTGATTAACATTGACGTGGACTATAGGTACATGGTAGTGAGAATTCTCCCTTATGATGACACATTTGAAGATGATCTTTCCTACAAATTCAAGGTGGAGATCTTCTCTTTCGAGATTGGTGAATGGAGAGAGTCAAATATCTCATTCCCACGAAGATTTAAACTTAACGATATCAATTCCAATGTTCACTTTGCTCACAATGAAATGCTGTATTGGTCCAGTATCTGGGGCGATTATAACTTTCTGATTGGGTTGGACCCGTTCATAATCAGCGACACTAATAGCAACATCATCAGGACCAGTAGTACTAGCAATAGTAACTCCGGGGATACTCATCAATATTATTATAAATGTCGTTTCATTGAACTTATAGTTAAAGAAGGTTATGATGAGGATTTACGGTCATCCAATCAGAACAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box F-box-like

Protein Analysis

158

Amino Acids

18.78

Weight (kDa)

4.79

Isoelectric Point (pI)

42.71

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006952)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g31431
rosa_chinensis	RchiOBHm_Chr1g0380481
rosa_laevigata	RLG00000001340 RLG00000002701 RLG00000026293 RLG00000026297
rosa_multiflora	Rmu_sc0000945.1_g000007 Rmu_sc0001733.1_g000007 Rmu_sc0006267.1_g000004
rosa_roxburghii	Rroxscaffold_3G00228330 Rroxscaffold_3G00228570 Rroxscaffold_3G00244720 Rroxscaffold_4G00279310 Rroxscaffold_4G00279330
rosa_rugosa	Rorug07G0270400
rosa_samantha	Rh1CG415600 Rh1DG431400 Rh7AG286300 Rh7AG425300 Rh7AG425800 Rh7DG289700 Rh7DG416900 Rh7DG417100
rosa_wichuraiana	Rw7G035160 Rw7G035250 Rw7G035290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	291, 402
AccB7I	CCANNNNNTGG	1 cut(s)	279
AcsI	RAATTY	2 cut(s)	96, 140
AdeI	CACNNNGTG	1 cut(s)	18
AfaI	GTAC	3 cut(s)	37, 83, 361
AfiI	CCNNNNNNNGG	1 cut(s)	279
AgsI	TTSAA	3 cut(s)	122, 145, 419
AjiI	CACGTC	1 cut(s)	70
Alw21I	GWGCWC	1 cut(s)	14
Alw44I	GTGCAC	1 cut(s)	10
AlwNI	CAGNNNCTG	1 cut(s)	279
ApaLI	GTGCAC	1 cut(s)	10
ApoI	RAATTY	2 cut(s)	96, 140
AspS9I	GGNCC	3 cut(s)	270, 310, 351
AsuC2I	CCSGG	1 cut(s)	379
AsuHPI	GGTGA	1 cut(s)	185
AvaII	GGWCC	3 cut(s)	270, 310, 351
BaeGI	GKGCMC	1 cut(s)	14
Bbv12I	GWGCWC	1 cut(s)	14
BciVI	GTATCC	1 cut(s)	376
BcnI	CCSGG	1 cut(s)	379
BfaI	CTAG	1 cut(s)	363
BfmI	CTRYAG	1 cut(s)	76
BfuI	GTATCC	1 cut(s)	376
BglII	AGATCT	1 cut(s)	153
BmcAI	AGTACT	2 cut(s)	37, 361
Bme1390I	CCNGG	1 cut(s)	379
Bme18I	GGWCC	3 cut(s)	270, 310, 351
BmgBI	CACGTC	1 cut(s)	70
BmgT120I	GGNCC	3 cut(s)	270, 310, 351
BmiI	GGNNCC	1 cut(s)	312
BmrFI	CCNGG	1 cut(s)	379
BmsI	GCATC	1 cut(s)	30
BplI	GAGNNNNNCTC	2 cut(s)	143, 175
BpuMI	CCSGG	1 cut(s)	379
BsaAI	YACGTR	1 cut(s)	9
BsaBI	GATNNNNATC	1 cut(s)	387
BsaJI	CCNNGG	1 cut(s)	378
Bsc4I	CCNNNNNNNGG	1 cut(s)	279
Bse1I	ACTGG	2 cut(s)	273, 354
Bse8I	GATNNNNATC	1 cut(s)	387
BseDI	CCNNGG	1 cut(s)	378
BseGI	GGATG	1 cut(s)	458
BseJI	GATNNNNATC	1 cut(s)	387
BseLI	CCNNNNNNNGG	1 cut(s)	279
BseNI	ACTGG	2 cut(s)	273, 354
BseSI	GKGCMC	1 cut(s)	14
BsiHKAI	GWGCWC	1 cut(s)	14
BsiSI	CCGG	1 cut(s)	378
BslI	CCNNNNNNNGG	1 cut(s)	279
Bsp1286I	GDGCHC	1 cut(s)	14
Bsp143I	GATC	3 cut(s)	49, 127, 153
BspLI	GGNNCC	1 cut(s)	312
BsrI	ACTGG	2 cut(s)	273, 354
BssECI	CCNNGG	1 cut(s)	378
BssMI	GATC	3 cut(s)	49, 127, 153
Bst4CI	ACNGT	1 cut(s)	456
BstAPI	GCANNNNNTGC	1 cut(s)	18
BstBAI	YACGTR	1 cut(s)	9
BstF5I	GGATG	1 cut(s)	458
BstKTI	GATC	3 cut(s)	52, 130, 156
BstMBI	GATC	3 cut(s)	49, 127, 153
BstMWI	GCNNNNNNNGC	1 cut(s)	18
BstSCI	CCNGG	1 cut(s)	377
BstSFI	CTRYAG	1 cut(s)	76
BstSLI	GKGCMC	1 cut(s)	14
BstX2I	RGATCY	1 cut(s)	153
BstYI	RGATCY	1 cut(s)	153
BsuI	GTATCC	1 cut(s)	376
BtrI	CACGTC	1 cut(s)	70
BtsCI	GGATG	1 cut(s)	458
CaiI	CAGNNNCTG	1 cut(s)	279
Cfr13I	GGNCC	3 cut(s)	270, 310, 351
Csp6I	GTAC	3 cut(s)	36, 82, 360
CviAII	CATG	1 cut(s)	85
CviQI	GTAC	3 cut(s)	36, 82, 360
DpnI	GATC	3 cut(s)	51, 129, 155
DpnII	GATC	3 cut(s)	49, 127, 153
DraI	TTTAAA	1 cut(s)	214
DraIII	CACNNNGTG	1 cut(s)	18
Eco32I	GATATC	1 cut(s)	226
Eco47I	GGWCC	3 cut(s)	270, 310, 351
EcoRI	GAATTC	1 cut(s)	96
EcoRV	GATATC	1 cut(s)	226
FaeI	CATG	1 cut(s)	88
FaiI	YATR	8 cut(s)	78, 86, 108, 291, 320, 402, 425, 441
FalI	AAGNNNNNCTT	2 cut(s)	114, 146
FatI	CATG	1 cut(s)	84
FokI	GGATG	1 cut(s)	445
FspBI	CTAG	1 cut(s)	363
HapII	CCGG	1 cut(s)	378
Hin1II	CATG	1 cut(s)	88
HinfI	GANTC	1 cut(s)	185
HpaII	CCGG	1 cut(s)	378
HphI	GGTGA	1 cut(s)	185
Hpy166II	GTNNAC	3 cut(s)	12, 73, 241
Hpy188I	TCNGA	2 cut(s)	300, 468
Hpy188III	TCNNGA	2 cut(s)	166, 349
Hpy8I	GTNNAC	3 cut(s)	12, 73, 241
HpyAV	CCTTC	1 cut(s)	428
HpyCH4III	ACNGT	1 cut(s)	456
HpyCH4IV	ACGT	2 cut(s)	8, 69
HpyCH4V	TGCA	3 cut(s)	12, 21, 46
HpyF10VI	GCNNNNNNNGC	1 cut(s)	18
HpySE526I	ACGT	2 cut(s)	8, 69
Hsp92II	CATG	1 cut(s)	88
Kzo9I	GATC	3 cut(s)	49, 127, 153
LpnPI	CCDG	6 cut(s)	56, 265, 286, 334, 367, 391
LweI	GCATC	1 cut(s)	30
MaeI	CTAG	1 cut(s)	363
MaeII	ACGT	2 cut(s)	8, 69
MaeIII	GTNAC	1 cut(s)	371
MalI	GATC	3 cut(s)	51, 129, 155
MboI	GATC	3 cut(s)	49, 127, 153
MboII	GAAGA	3 cut(s)	134, 148, 219
MflI	RGATCY	1 cut(s)	153
MhlI	GDGCHC	1 cut(s)	14
MluCI	AATT	3 cut(s)	96, 140, 229
MlyI	GAGTC	1 cut(s)	194
MmeI	TCCRAC	1 cut(s)	288
MnlI	CCTC	1 cut(s)	439
MseI	TTAA	4 cut(s)	60, 213, 219, 429
MslI	CAYNNNNRTG	2 cut(s)	68, 89
MspI	CCGG	1 cut(s)	378
MspR9I	CCNGG	1 cut(s)	379
MwoI	GCNNNNNNNGC	1 cut(s)	18
NciI	CCSGG	1 cut(s)	379
NdeII	GATC	3 cut(s)	49, 127, 153
NlaIII	CATG	1 cut(s)	88
NlaIV	GGNNCC	1 cut(s)	312
PflMI	CCANNNNNTGG	1 cut(s)	279
PleI	GAGTC	1 cut(s)	193
PpsI	GAGTC	1 cut(s)	193
Ppu21I	YACGTR	1 cut(s)	9
PsiI	TTATAA	2 cut(s)	291, 402
PspN4I	GGNNCC	1 cut(s)	312
PspPI	GGNCC	3 cut(s)	270, 310, 351
PstNI	CAGNNNCTG	1 cut(s)	279
PsuI	RGATCY	1 cut(s)	153
RsaI	GTAC	3 cut(s)	37, 83, 361
RsaNI	GTAC	3 cut(s)	36, 82, 360
RseI	CAYNNNNRTG	2 cut(s)	68, 89
SaqAI	TTAA	4 cut(s)	60, 213, 219, 429
Sau3AI	GATC	3 cut(s)	49, 127, 153
Sau96I	GGNCC	3 cut(s)	270, 310, 351
ScaI	AGTACT	2 cut(s)	37, 361
SchI	GAGTC	1 cut(s)	194
ScrFI	CCNGG	1 cut(s)	379
SduI	GDGCHC	1 cut(s)	14
SetI	ASST	5 cut(s)	11, 72, 83, 150, 439
SfaNI	GCATC	1 cut(s)	30
SfcI	CTRYAG	1 cut(s)	76
SinI	GGWCC	3 cut(s)	270, 310, 351
SmiMI	CAYNNNNRTG	2 cut(s)	68, 89
Sse9I	AATT	3 cut(s)	96, 140, 229
SspI	AATATT	1 cut(s)	395
SspMI	CTAG	1 cut(s)	363
StyD4I	CCNGG	1 cut(s)	377
TaaI	ACNGT	1 cut(s)	456
TaiI	ACGT	2 cut(s)	11, 72
TaqI	TCGA	1 cut(s)	165
TasI	AATT	3 cut(s)	96, 140, 229
TatI	WGTACW	2 cut(s)	35, 359
Tru1I	TTAA	4 cut(s)	60, 213, 219, 429
Tru9I	TTAA	4 cut(s)	60, 213, 219, 429
TspDTI	ATGAA	3 cut(s)	270, 307, 403
Van91I	CCANNNNNTGG	1 cut(s)	279
VneI	GTGCAC	1 cut(s)	10
VpaK11BI	GGWCC	3 cut(s)	270, 310, 351
XapI	RAATTY	2 cut(s)	96, 140
XspI	CTAG	1 cut(s)	363
ZrmI	AGTACT	2 cut(s)	37, 361

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.