Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7D

Orthogroup ID

OG0006952

Physical Location & Seq

Genomic Coordinates Reverse (-)

58703737 .. 58704519

Gene Structure 783 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7DG417100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 783 bp

ATGGTAGTGAGAATTCTCCCTTATGATGACACATTTGAAGATGATCTTTCCTACAAATTCAAGGTGGAGATCTTCTCTTTTGAGATTGGTGAATGGAGAGAGTCAATTATCTCATTCCCACAAAGATTTACACTTAATGACATCAATTCCGATGTTCACTTTGCTCACAATGAAATGCTGTATTGGTCGAGTATCTGGGGACATTATAACTTTCTGATTGGGTTGAACCCGTTCATGATCAGCGACGTCACTAATAACAACATCATTAGGACCAGTAGTACTAGCAATAGTAACTCCGGTGATAATCATCAATATTACTATAAATGTCGTTACATTGAACTCGTAGTTAAAGACGCTTATTATAATGAGTTATCTTACCTCCATAACTGGCAACGACAGGGCGTACTTGTGCACGGAGCCGGAGGGTGTCTGCAAATATGTCTTTTAGACGCTGAACATTCTGCATTCATTTGGGAATTGAAAAAAGAAGAAGATGATCTGATGATTGCGGCCGATGGAGCAGGAAAATTGCATGCGAAGCATCTTTTACTACCTTTGACCAAAGAAATGGAGCTGATTGCTTTAGACCCAAATAATGAAGGCTACTTATATGTAAGACTCAACGGATCCCTTTTTGAACTTATAAACCTTCGTAGAAGCTTGTTATTCGAGATGAACATGCCTGAAAGGGGTCGAATTGTTAGTAACTATTGCTTCTTCCCATTAAAAGCGAAACCATGGTGGCCAACACCAGTTCCCAGACTACCTCACCCATCAGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box

Protein Analysis

260

Amino Acids

30.35

Weight (kDa)

5.55

Isoelectric Point (pI)

33.3

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006952)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g31431
rosa_chinensis	RchiOBHm_Chr1g0380481
rosa_laevigata	RLG00000001340 RLG00000002701 RLG00000026293 RLG00000026297
rosa_multiflora	Rmu_sc0000945.1_g000007 Rmu_sc0001733.1_g000007 Rmu_sc0006267.1_g000004
rosa_roxburghii	Rroxscaffold_3G00228330 Rroxscaffold_3G00228570 Rroxscaffold_3G00244720 Rroxscaffold_4G00279310 Rroxscaffold_4G00279330
rosa_rugosa	Rorug07G0270400
rosa_samantha	Rh1CG415600 Rh1DG431400 Rh7AG286300 Rh7AG425300 Rh7AG425800 Rh7DG289700 Rh7DG416900 Rh7DG417100
rosa_wichuraiana	Rw7G035160 Rw7G035250 Rw7G035290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	3 cut(s)	207, 363, 644
AatII	GACGTC	1 cut(s)	249
AciI	CCGC	1 cut(s)	509
AclWI	GGATC	2 cut(s)	621, 634
AcoI	YGGCCR	2 cut(s)	510, 743
AcsI	RAATTY	2 cut(s)	12, 56
AcyI	GRCGYC	1 cut(s)	246
AfaI	GTAC	2 cut(s)	280, 405
AfiI	CCNNNNNNNGG	1 cut(s)	689
AgsI	TTSAA	6 cut(s)	38, 61, 226, 338, 481, 638
AluBI	AGCT	3 cut(s)	574, 660, 779
AluI	AGCT	3 cut(s)	574, 660, 779
Alw21I	GWGCWC	1 cut(s)	414
Alw44I	GTGCAC	1 cut(s)	410
AlwI	GGATC	2 cut(s)	621, 634
AoxI	GGCC	2 cut(s)	510, 743
ApaLI	GTGCAC	1 cut(s)	410
ApoI	RAATTY	2 cut(s)	12, 56
Asp700I	GAANNNNTTC	1 cut(s)	230
AspS9I	GGNCC	1 cut(s)	270
AsuHPI	GGTGA	3 cut(s)	101, 311, 761
AvaII	GGWCC	1 cut(s)	270
BaeGI	GKGCMC	1 cut(s)	414
BalI	TGGCCA	1 cut(s)	745
BamHI	GGATCC	1 cut(s)	626
Bbv12I	GWGCWC	1 cut(s)	414
BccI	CCATC	2 cut(s)	509, 781
BclI	TGATCA	1 cut(s)	237
BfaI	CTAG	1 cut(s)	282
BglII	AGATCT	1 cut(s)	69
BisI	GCNGC	1 cut(s)	510
BlsI	GCNGC	1 cut(s)	511
BmcAI	AGTACT	1 cut(s)	280
Bme18I	GGWCC	1 cut(s)	270
BmgT120I	GGNCC	1 cut(s)	270
BmiI	GGNNCC	2 cut(s)	418, 628
BmsI	GCATC	1 cut(s)	550
BplI	GAGNNNNNCTC	2 cut(s)	59, 91
BsaBI	GATNNNNATC	1 cut(s)	306
BsaHI	GRCGYC	1 cut(s)	246
BsaJI	CCNNGG	1 cut(s)	737
BsaWI	WCCGGW	1 cut(s)	296
Bsc4I	CCNNNNNNNGG	1 cut(s)	689
Bse1I	ACTGG	3 cut(s)	273, 392, 752
Bse8I	GATNNNNATC	1 cut(s)	306
BseDI	CCNNGG	1 cut(s)	737
BseJI	GATNNNNATC	1 cut(s)	306
BseLI	CCNNNNNNNGG	1 cut(s)	689
BseNI	ACTGG	3 cut(s)	273, 392, 752
BseSI	GKGCMC	1 cut(s)	414
BseX3I	CGGCCG	1 cut(s)	510
Bsh1285I	CGRYCG	1 cut(s)	513
BshFI	GGCC	2 cut(s)	512, 745
BsiEI	CGRYCG	1 cut(s)	513
BsiHKAI	GWGCWC	1 cut(s)	414
BsiSI	CCGG	2 cut(s)	297, 420
BslFI	GGGAC	1 cut(s)	213
BslI	CCNNNNNNNGG	1 cut(s)	689
BsmFI	GGGAC	1 cut(s)	213
BsmI	GAATGC	1 cut(s)	464
BsnI	GGCC	2 cut(s)	512, 745
Bsp1286I	GDGCHC	1 cut(s)	414
Bsp143I	GATC	5 cut(s)	43, 69, 237, 496, 626
Bsp19I	CCATGG	1 cut(s)	737
BspACI	CCGC	1 cut(s)	509
BspANI	GGCC	2 cut(s)	512, 745
BspHI	TCATGA	1 cut(s)	234
BspLI	GGNNCC	2 cut(s)	418, 628
BspPI	GGATC	2 cut(s)	621, 634
BsrI	ACTGG	3 cut(s)	273, 392, 752
BssECI	CCNNGG	1 cut(s)	737
BssMI	GATC	5 cut(s)	43, 69, 237, 496, 626
BssNI	GRCGYC	1 cut(s)	246
BssT1I	CCWWGG	1 cut(s)	737
BstACI	GRCGYC	1 cut(s)	246
BstC8I	GCNNGC	1 cut(s)	534
BstDSI	CCRYGG	1 cut(s)	737
BstKTI	GATC	5 cut(s)	46, 72, 240, 499, 629
BstMBI	GATC	5 cut(s)	43, 69, 237, 496, 626
BstMCI	CGRYCG	1 cut(s)	513
BstMWI	GCNNNNNNNGC	2 cut(s)	518, 538
BstNSI	RCATGY	2 cut(s)	536, 682
BstSLI	GKGCMC	1 cut(s)	414
BstX2I	RGATCY	2 cut(s)	69, 626
BstXI	CCANNNNNNTGG	1 cut(s)	568
BstYI	RGATCY	2 cut(s)	69, 626
BstZI	CGGCCG	1 cut(s)	510
BsuRI	GGCC	2 cut(s)	512, 745
BtgI	CCRYGG	1 cut(s)	737
Cac8I	GCNNGC	1 cut(s)	534
CciI	TCATGA	1 cut(s)	234
Cfr13I	GGNCC	1 cut(s)	270
CseI	GACGC	2 cut(s)	362, 458
Csp6I	GTAC	2 cut(s)	279, 404
CviAII	CATG	4 cut(s)	235, 533, 679, 738
CviJI	RGCY	7 cut(s)	419, 512, 574, 603, 660, 745, 779
CviKI_1	RGCY	7 cut(s)	419, 512, 574, 603, 660, 745, 779
CviQI	GTAC	2 cut(s)	279, 404
DpnI	GATC	5 cut(s)	45, 71, 239, 498, 628
DpnII	GATC	5 cut(s)	43, 69, 237, 496, 626
EaeI	YGGCCR	2 cut(s)	510, 743
EagI	CGGCCG	1 cut(s)	510
EclXI	CGGCCG	1 cut(s)	510
Eco130I	CCWWGG	1 cut(s)	737
Eco47I	GGWCC	1 cut(s)	270
Eco52I	CGGCCG	1 cut(s)	510
EcoRI	GAATTC	1 cut(s)	12
EcoT14I	CCWWGG	1 cut(s)	737
ErhI	CCWWGG	1 cut(s)	737
FaeI	CATG	4 cut(s)	238, 536, 682, 741
FalI	AAGNNNNNCTT	2 cut(s)	30, 62
FaqI	GGGAC	1 cut(s)	213
FatI	CATG	4 cut(s)	234, 532, 678, 737
FbaI	TGATCA	1 cut(s)	237
Fnu4HI	GCNGC	1 cut(s)	510
Fsp4HI	GCNGC	1 cut(s)	510
FspBI	CTAG	1 cut(s)	282
GluI	GCNGC	1 cut(s)	510
HaeIII	GGCC	2 cut(s)	512, 745
HapII	CCGG	2 cut(s)	297, 420
HgaI	GACGC	2 cut(s)	362, 458
Hin1I	GRCGYC	1 cut(s)	246
Hin1II	CATG	4 cut(s)	238, 536, 682, 741
HindIII	AAGCTT	1 cut(s)	658
HinfI	GANTC	2 cut(s)	101, 618
HpaII	CCGG	2 cut(s)	297, 420
HphI	GGTGA	3 cut(s)	101, 311, 761
Hpy166II	GTNNAC	2 cut(s)	157, 412
Hpy188I	TCNGA	3 cut(s)	151, 216, 501
Hpy188III	TCNNGA	2 cut(s)	235, 670
Hpy8I	GTNNAC	2 cut(s)	157, 412
Hpy99I	CGWCG	1 cut(s)	248
HpyAV	CCTTC	2 cut(s)	593, 659
HpyCH4IV	ACGT	1 cut(s)	246
HpyCH4V	TGCA	4 cut(s)	412, 433, 464, 532
HpyF10VI	GCNNNNNNNGC	2 cut(s)	518, 538
HpySE526I	ACGT	1 cut(s)	246
Hsp92I	GRCGYC	1 cut(s)	246
Hsp92II	CATG	4 cut(s)	238, 536, 682, 741
Ksp22I	TGATCA	1 cut(s)	237
Kzo9I	GATC	5 cut(s)	43, 69, 237, 496, 626
LmnI	GCTCC	3 cut(s)	416, 518, 571
LweI	GCATC	1 cut(s)	550
MaeI	CTAG	1 cut(s)	282
MaeII	ACGT	1 cut(s)	246
MaeIII	GTNAC	4 cut(s)	247, 290, 329, 704
MalI	GATC	5 cut(s)	45, 71, 239, 498, 628
MboI	GATC	5 cut(s)	43, 69, 237, 496, 626
MboII	GAAGA	5 cut(s)	50, 64, 500, 503, 709
MflI	RGATCY	2 cut(s)	69, 626
MhlI	GDGCHC	1 cut(s)	414
MlsI	TGGCCA	1 cut(s)	745
MluCI	AATT	7 cut(s)	12, 56, 105, 145, 476, 527, 696
MluNI	TGGCCA	1 cut(s)	745
MlyI	GAGTC	2 cut(s)	110, 612
MnlI	CCTC	3 cut(s)	389, 416, 777
Mox20I	TGGCCA	1 cut(s)	745
MroXI	GAANNNNTTC	1 cut(s)	230
MscI	TGGCCA	1 cut(s)	745
MseI	TTAA	3 cut(s)	135, 348, 725
Msp20I	TGGCCA	1 cut(s)	745
MspI	CCGG	2 cut(s)	297, 420
Mva1269I	GAATGC	1 cut(s)	464
MwoI	GCNNNNNNNGC	2 cut(s)	518, 538
NcoI	CCATGG	1 cut(s)	737
NdeII	GATC	5 cut(s)	43, 69, 237, 496, 626
NlaIII	CATG	4 cut(s)	238, 536, 682, 741
NlaIV	GGNNCC	2 cut(s)	418, 628
NmuCI	GTSAC	1 cut(s)	247
NspI	RCATGY	2 cut(s)	536, 682
PaeI	GCATGC	1 cut(s)	536
PagI	TCATGA	1 cut(s)	234
PctI	GAATGC	1 cut(s)	464
PdmI	GAANNNNTTC	1 cut(s)	230
PkrI	GCNGC	1 cut(s)	511
PleI	GAGTC	2 cut(s)	109, 612
PpsI	GAGTC	2 cut(s)	109, 612
PsiI	TTATAA	3 cut(s)	207, 363, 644
PspN4I	GGNNCC	2 cut(s)	418, 628
PspPI	GGNCC	1 cut(s)	270
PsuI	RGATCY	2 cut(s)	69, 626
RsaI	GTAC	2 cut(s)	280, 405
RsaNI	GTAC	2 cut(s)	279, 404
SaqAI	TTAA	3 cut(s)	135, 348, 725
SatI	GCNGC	1 cut(s)	510
Sau3AI	GATC	5 cut(s)	43, 69, 237, 496, 626
Sau96I	GGNCC	1 cut(s)	270
ScaI	AGTACT	1 cut(s)	280
SchI	GAGTC	2 cut(s)	110, 612
SduI	GDGCHC	1 cut(s)	414
SetI	ASST	9 cut(s)	66, 249, 381, 556, 576, 651, 662, 769, 781
SfaNI	GCATC	1 cut(s)	550
SinI	GGWCC	1 cut(s)	270
SphI	GCATGC	1 cut(s)	536
Sse9I	AATT	7 cut(s)	12, 56, 105, 145, 476, 527, 696
SsiI	CCGC	1 cut(s)	509
SspI	AATATT	1 cut(s)	314
SspMI	CTAG	1 cut(s)	282
StyI	CCWWGG	1 cut(s)	737
TaiI	ACGT	1 cut(s)	249
TaqI	TCGA	3 cut(s)	188, 669, 694
TasI	AATT	7 cut(s)	12, 56, 105, 145, 476, 527, 696
TatI	WGTACW	1 cut(s)	278
TauI	GCSGC	1 cut(s)	512
Tru1I	TTAA	3 cut(s)	135, 348, 725
Tru9I	TTAA	3 cut(s)	135, 348, 725
TseFI	GTSAC	1 cut(s)	247
Tsp45I	GTSAC	1 cut(s)	247
TspDTI	ATGAA	5 cut(s)	186, 223, 457, 612, 689
TspGWI	ACGGA	2 cut(s)	429, 639
VneI	GTGCAC	1 cut(s)	410
VpaK11BI	GGWCC	1 cut(s)	270
XapI	RAATTY	2 cut(s)	12, 56
XceI	RCATGY	2 cut(s)	536, 682
XmnI	GAANNNNTTC	1 cut(s)	230
XspI	CTAG	1 cut(s)	282
ZraI	GACGTC	1 cut(s)	247
ZrmI	AGTACT	1 cut(s)	280

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.