Rh7DG289700

A Receptor for Ubiquitination Targets

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7D
OG0006952
Physical Location & Seq
Forward (+)
32507461 .. 32511296
3836 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7DG289700.1

Sequence Viewer

Length: 876 bp
ATGCAGCACCTAGTTAATATCTACGATAATTATAGGTGTAAGGTTGTAAGATTTCTTCCTTATGGTGAGACAATACACCAAGCACACTGGTTTTTGATGGAGAATTCGTTCAAGTTCAAGGTGGAGATCTTTTCTTTTGAGACTGGTGAATGGAGAGAGTCAGTTATATCGTCCCCACGAAAATTCATTTTTGATGAAATCAATTCCGATATTAACTTTGCGTACAATGGAATGCTATATTGGCCGAGTAGGTCAAGTGATGCTAACTTCCTTATTGGGTTGAATCCATTCATGATCAACAACGACACTGACAACAACAGAACTCGTGCTAGTAACTTCGCCGGTGATGGTGATGGTTGCTATAGATGTCGTTTTATTGAACTAGTAGTCCCAATTGACAAAGAAATAACTTCTCGTAAGTATCATATTCAATGTTTAGATGTGCGAGAAGGGTGTCTGCATATGTGCGGCTTTGACTCAATTGATAAATTTATAATGATTTGGGAGTTGAAAGAAGATGATAATCTGACCCTCGCAACCGATGGCGTTGAAATTTTGTGTGCGAAGTATGCCGCAGATGATTATTCAATGGAATTTTCGAATTATGTGAACGTAATAGCTATAGAGCCAATTGCTTTTGACCCAAATGATGAGGATATATTGTACCTAAGACTAAGACTCGAGTACCTCAACGATGATGGAGATGGAGAGGGAGTCGAGGATGTTGATATCGATGCCAACCTTAGTACAGGAAACTTGACCTACTACTCGCCGATGATGGCTGAAAAGAGCTTCTACCCACTAACTGTGCCATTGTGGCCGACACCAGTTCCTCGACTACCACACCAATTTGCTGCTTCTGCCTTGTCTAATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box

Protein Analysis

291

Amino Acids

33.62

Weight (kDa)

4.51

Isoelectric Point (pI)

34.02

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
b-prop_At3g26010-like PF24750 33 - 223 7.4e-06 F-box protein At3g26010-like, beta-propeller
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 494
AciI CCGC 2 cut(s) 468, 573
AcoI YGGCCR 2 cut(s) 242, 818
AcsI RAATTY 5 cut(s) 103, 182, 488, 552, 593
AfaI GTAC 4 cut(s) 224, 665, 686, 748
AgsI TTSAA 8 cut(s) 112, 118, 283, 380, 431, 511, 551, 588
AhlI ACTAGT 1 cut(s) 382
AjuI GAANNNNNNNTTGG 2 cut(s) 223, 255
AloI GAACNNNNNNTCC 4 cut(s) 92, 124, 372, 404
AluBI AGCT 2 cut(s) 620, 792
AluI AGCT 2 cut(s) 620, 792
Alw26I GTCTC 2 cut(s) 62, 134
Ama87I CYCGRG 1 cut(s) 680
AoxI GGCC 2 cut(s) 242, 818
ApeKI GCWGC 2 cut(s) 4, 854
ApoI RAATTY 5 cut(s) 103, 182, 488, 552, 593
Asp700I GAANNNNTTC 2 cut(s) 107, 287
AsuHPI GGTGA 4 cut(s) 77, 158, 356, 362
AsuII TTCGAA 1 cut(s) 599
AvaI CYCGRG 1 cut(s) 680
BaeI ACNNNNGTAYC 2 cut(s) 668, 701
BarI GAAGNNNNNNTAC 2 cut(s) 39, 71
BauI CACGAG 1 cut(s) 324
BbvI GCAGC 2 cut(s) 16, 841
BccI CCATC 7 cut(s) 91, 341, 347, 536, 692, 698, 772
BclI TGATCA 1 cut(s) 294
BcoDI GTCTC 2 cut(s) 62, 134
BcuI ACTAGT 1 cut(s) 382
BfaI CTAG 3 cut(s) 11, 330, 383
BfmI CTRYAG 2 cut(s) 361, 621
BglI GCCNNNNNGGC 1 cut(s) 817
BglII AGATCT 1 cut(s) 126
BisI GCNGC 4 cut(s) 5, 469, 573, 855
BlsI GCNGC 4 cut(s) 6, 470, 574, 856
BmeT110I CYCGRG 1 cut(s) 680
BmsI GCATC 2 cut(s) 250, 724
Bpu14I TTCGAA 1 cut(s) 599
Bsa29I ATCGAT 1 cut(s) 732
BsaBI GATNNNNATC 1 cut(s) 522
BsaXI ACNNNNNCTCC 4 cut(s) 92, 122, 699, 729
Bse118I RCCGGY 1 cut(s) 341
Bse1I ACTGG 3 cut(s) 92, 148, 827
Bse8I GATNNNNATC 1 cut(s) 522
BseCI ATCGAT 1 cut(s) 732
BseGI GGATG 1 cut(s) 727
BseJI GATNNNNATC 1 cut(s) 522
BseNI ACTGG 3 cut(s) 92, 148, 827
BseXI GCAGC 2 cut(s) 16, 841
BshFI GGCC 2 cut(s) 244, 820
BshVI ATCGAT 1 cut(s) 732
BsiHKCI CYCGRG 1 cut(s) 680
BsiSI CCGG 1 cut(s) 342
BslFI GGGAC 2 cut(s) 157, 374
BsmAI GTCTC 2 cut(s) 62, 134
BsmFI GGGAC 2 cut(s) 157, 374
BsmI GAATGC 1 cut(s) 237
BsnI GGCC 2 cut(s) 244, 820
BsoBI CYCGRG 1 cut(s) 680
Bsp119I TTCGAA 1 cut(s) 599
Bsp143I GATC 2 cut(s) 126, 294
BspACI CCGC 2 cut(s) 468, 573
BspANI GGCC 2 cut(s) 244, 820
BspDI ATCGAT 1 cut(s) 732
BspHI TCATGA 1 cut(s) 291
BspT104I TTCGAA 1 cut(s) 599
BsrFI RCCGGY 1 cut(s) 341
BsrI ACTGG 3 cut(s) 92, 148, 827
BssAI RCCGGY 1 cut(s) 341
BssMI GATC 2 cut(s) 126, 294
BssSI CACGAG 1 cut(s) 324
Bst2BI CACGAG 1 cut(s) 324
Bst4CI ACNGT 1 cut(s) 808
BstBI TTCGAA 1 cut(s) 599
BstDEI CTNAG 3 cut(s) 668, 674, 743
BstF5I GGATG 1 cut(s) 727
BstKTI GATC 2 cut(s) 129, 297
BstMAI GTCTC 2 cut(s) 62, 134
BstMBI GATC 2 cut(s) 126, 294
BstMWI GCNNNNNNNGC 4 cut(s) 241, 569, 817, 860
BstSFI CTRYAG 2 cut(s) 361, 621
BstV1I GCAGC 2 cut(s) 16, 841
BstX2I RGATCY 1 cut(s) 126
BstYI RGATCY 1 cut(s) 126
Bsu15I ATCGAT 1 cut(s) 732
BsuRI GGCC 2 cut(s) 244, 820
BsuTUI ATCGAT 1 cut(s) 732
BtsCI GGATG 1 cut(s) 727
BtsIMutI CAGTG 2 cut(s) 85, 306
CciI TCATGA 1 cut(s) 291
Cfr10I RCCGGY 1 cut(s) 341
ClaI ATCGAT 1 cut(s) 732
Csp6I GTAC 4 cut(s) 223, 664, 685, 747
CviAII CATG 1 cut(s) 292
CviJI RGCY 7 cut(s) 244, 471, 620, 628, 782, 792, 820
CviKI_1 RGCY 7 cut(s) 244, 471, 620, 628, 782, 792, 820
CviQI GTAC 4 cut(s) 223, 664, 685, 747
DdeI CTNAG 3 cut(s) 668, 674, 743
DpnI GATC 2 cut(s) 128, 296
DpnII GATC 2 cut(s) 126, 294
EaeI YGGCCR 2 cut(s) 242, 818
Eco32I GATATC 1 cut(s) 730
Eco88I CYCGRG 1 cut(s) 680
EcoRI GAATTC 1 cut(s) 103
EcoRV GATATC 1 cut(s) 730
FaeI CATG 1 cut(s) 295
FaqI GGGAC 2 cut(s) 157, 374
FatI CATG 1 cut(s) 291
FauNDI CATATG 1 cut(s) 462
FbaI TGATCA 1 cut(s) 294
Fnu4HI GCNGC 4 cut(s) 5, 469, 573, 855
FokI GGATG 1 cut(s) 734
Fsp4HI GCNGC 4 cut(s) 5, 469, 573, 855
FspBI CTAG 3 cut(s) 11, 330, 383
GluI GCNGC 4 cut(s) 5, 469, 573, 855
HaeIII GGCC 2 cut(s) 244, 820
HapII CCGG 1 cut(s) 342
Hin1II CATG 1 cut(s) 295
HinfI GANTC 5 cut(s) 158, 283, 476, 678, 714
HpaII CCGG 1 cut(s) 342
HphI GGTGA 4 cut(s) 77, 158, 356, 362
Hpy166II GTNNAC 1 cut(s) 610
Hpy188I TCNGA 2 cut(s) 208, 528
Hpy188III TCNNGA 1 cut(s) 292
Hpy8I GTNNAC 1 cut(s) 610
HpyAV CCTTC 1 cut(s) 443
HpyCH4III ACNGT 1 cut(s) 808
HpyCH4IV ACGT 1 cut(s) 612
HpyCH4V TGCA 2 cut(s) 4, 460
HpyF10VI GCNNNNNNNGC 4 cut(s) 241, 569, 817, 860
HpyF3I CTNAG 3 cut(s) 668, 674, 743
HpySE526I ACGT 1 cut(s) 612
Hsp92II CATG 1 cut(s) 295
Ksp22I TGATCA 1 cut(s) 294
Kzo9I GATC 2 cut(s) 126, 294
LpnPI CCDG 5 cut(s) 73, 129, 355, 735, 840
Lsp1109I GCAGC 2 cut(s) 16, 841
LweI GCATC 2 cut(s) 250, 724
MaeI CTAG 3 cut(s) 11, 330, 383
MaeII ACGT 1 cut(s) 612
MaeIII GTNAC 1 cut(s) 332
MalI GATC 2 cut(s) 128, 296
MboI GATC 2 cut(s) 126, 294
MboII GAAGA 2 cut(s) 47, 527
MfeI CAATTG 3 cut(s) 393, 480, 630
MflI RGATCY 1 cut(s) 126
MlyI GAGTC 4 cut(s) 167, 470, 672, 723
MnlI CCTC 6 cut(s) 542, 646, 698, 703, 712, 843
MroXI GAANNNNTTC 2 cut(s) 107, 287
MseI TTAA 2 cut(s) 15, 213
MspI CCGG 1 cut(s) 342
MunI CAATTG 3 cut(s) 393, 480, 630
Mva1269I GAATGC 1 cut(s) 237
MwoI GCNNNNNNNGC 4 cut(s) 241, 569, 817, 860
NdeI CATATG 1 cut(s) 462
NdeII GATC 2 cut(s) 126, 294
NlaIII CATG 1 cut(s) 295
NmeAIII GCCGAG 1 cut(s) 270
NspV TTCGAA 1 cut(s) 599
PaeR7I CTCGAG 1 cut(s) 680
PagI TCATGA 1 cut(s) 291
PctI GAATGC 1 cut(s) 237
PdmI GAANNNNTTC 2 cut(s) 107, 287
PfeI GAWTC 1 cut(s) 283
PkrI GCNGC 4 cut(s) 6, 470, 574, 856
PleI GAGTC 4 cut(s) 166, 470, 672, 722
PpsI GAGTC 4 cut(s) 166, 470, 672, 722
PsiI TTATAA 1 cut(s) 494
PspXI VCTCGAGB 1 cut(s) 680
PsuI RGATCY 1 cut(s) 126
RsaI GTAC 4 cut(s) 224, 665, 686, 748
RsaNI GTAC 4 cut(s) 223, 664, 685, 747
SaqAI TTAA 2 cut(s) 15, 213
SatI GCNGC 4 cut(s) 5, 469, 573, 855
Sau3AI GATC 2 cut(s) 126, 294
SchI GAGTC 4 cut(s) 167, 470, 672, 723
SfaNI GCATC 2 cut(s) 250, 724
SfcI CTRYAG 2 cut(s) 361, 621
Sfr274I CTCGAG 1 cut(s) 680
SfuI TTCGAA 1 cut(s) 599
SgrAI CRCCGGYG 1 cut(s) 341
SlaI CTCGAG 1 cut(s) 680
SmlI CTYRAG 1 cut(s) 680
SmoI CTYRAG 1 cut(s) 680
SpeI ACTAGT 1 cut(s) 382
SsiI CCGC 2 cut(s) 468, 573
SspMI CTAG 3 cut(s) 11, 330, 383
TaaI ACNGT 1 cut(s) 808
TaiI ACGT 1 cut(s) 615
TaqI TCGA 5 cut(s) 599, 681, 717, 732, 835
TatI WGTACW 1 cut(s) 746
TauI GCSGC 2 cut(s) 471, 575
TfiI GAWTC 1 cut(s) 283
Tru1I TTAA 2 cut(s) 15, 213
Tru9I TTAA 2 cut(s) 15, 213
TscAI CASTG 2 cut(s) 92, 313
TseI GCWGC 2 cut(s) 4, 854
TspDTI ATGAA 3 cut(s) 175, 210, 280
TspRI CASTG 2 cut(s) 92, 313
XapI RAATTY 5 cut(s) 103, 182, 488, 552, 593
XhoI CTCGAG 1 cut(s) 680
XmnI GAANNNNTTC 2 cut(s) 107, 287
XspI CTAG 3 cut(s) 11, 330, 383
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.