Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr7

Orthogroup ID

OG0006952

Physical Location & Seq

Genomic Coordinates Reverse (-)

52551914 .. 52557213

Gene Structure 5300 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw7G035250.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 633 bp

ATGGGAAGTGATCACGGTGAGGAAAACACAGAGACCCAGCAAAGCTTCGTAGAGAGGAAGCATCAGTTTCCTGGAATGATGACTGCAAAATTGGAGCTCCATAATCTTTTAAAGGAGAGGACCAGTAGTACTAGCAATAGTAACTCCGGTGATAATCCTCAATATTACCCTAAATGTCGTTACATTGAACTCATAGTTAAAGACGCTAATTTTGATGAGTTATCTTACCTCCATAACTGTCAAATACATGACGTAGTTGTGCACGGAACCGGAGGGTATCTGCAAATATGTCGTTTAGACGTTGAACATTCTGCATTCATTTGGGAGTTAAAAAAAGAAGAAGATGATCTGATAATTGCGGCCGATGGAGCAGGAAAATTGTATTCGAAGCATCTTTTACTGCCTTTGGCCAAAGAAATGGAGCTGATTGGTTTAGACCCATATAATGAAGGCTGCTTATACGTAAGACTCAACGGATCCCTTTTTGATCTTATAAACCTTCGTAGAAGCTTGTTATACGAGATGAACATGCCTAAAACGGGTCGAAATATTAGTAACTGTTGCTTCTTCCCATTAAAAGCGAAACCATGGTGGCCAACACCAGTTCCCAGACTACCTCACCCATCAGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box

Protein Analysis

210

Amino Acids

24.02

Weight (kDa)

5.98

Isoelectric Point (pI)

34.24

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006952)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g31431
rosa_chinensis	RchiOBHm_Chr1g0380481
rosa_laevigata	RLG00000001340 RLG00000002701 RLG00000026293 RLG00000026297
rosa_multiflora	Rmu_sc0000945.1_g000007 Rmu_sc0001733.1_g000007 Rmu_sc0006267.1_g000004
rosa_roxburghii	Rroxscaffold_3G00228330 Rroxscaffold_3G00228570 Rroxscaffold_3G00244720 Rroxscaffold_4G00279310 Rroxscaffold_4G00279330
rosa_rugosa	Rorug07G0270400
rosa_samantha	Rh1CG415600 Rh1DG431400 Rh7AG286300 Rh7AG425300 Rh7AG425800 Rh7DG289700 Rh7DG416900 Rh7DG417100
rosa_wichuraiana	Rw7G035160 Rw7G035250 Rw7G035290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	494
AciI	CCGC	1 cut(s)	359
AclWI	GGATC	2 cut(s)	471, 484
AcoI	YGGCCR	3 cut(s)	360, 408, 593
AfaI	GTAC	1 cut(s)	130
AfiI	CCNNNNNNNGG	1 cut(s)	539
AgsI	TTSAA	2 cut(s)	188, 305
AjnI	CCWGG	1 cut(s)	70
AluBI	AGCT	5 cut(s)	45, 97, 424, 510, 629
AluI	AGCT	5 cut(s)	45, 97, 424, 510, 629
Alw21I	GWGCWC	2 cut(s)	99, 264
Alw26I	GTCTC	1 cut(s)	26
Alw44I	GTGCAC	1 cut(s)	260
AlwI	GGATC	2 cut(s)	471, 484
AoxI	GGCC	3 cut(s)	360, 408, 593
ApaLI	GTGCAC	1 cut(s)	260
ApeKI	GCWGC	1 cut(s)	453
ArsI	GACNNNNNNTTYG	2 cut(s)	194, 226
AspS9I	GGNCC	1 cut(s)	120
AsuHPI	GGTGA	3 cut(s)	29, 161, 611
AsuII	TTCGAA	1 cut(s)	386
AvaII	GGWCC	1 cut(s)	120
BaeGI	GKGCMC	1 cut(s)	264
BalI	TGGCCA	2 cut(s)	410, 595
BamHI	GGATCC	1 cut(s)	476
BanII	GRGCYC	1 cut(s)	99
Bbv12I	GWGCWC	2 cut(s)	99, 264
BbvI	GCAGC	1 cut(s)	440
BccI	CCATC	2 cut(s)	359, 631
BcgI	CGANNNNNNTGC	2 cut(s)	272, 306
BciT130I	CCWGG	1 cut(s)	72
BclI	TGATCA	1 cut(s)	10
BcoDI	GTCTC	1 cut(s)	26
BfaI	CTAG	1 cut(s)	132
BisI	GCNGC	2 cut(s)	360, 454
BlsI	GCNGC	2 cut(s)	361, 455
BmcAI	AGTACT	1 cut(s)	130
Bme1390I	CCNGG	1 cut(s)	72
Bme18I	GGWCC	1 cut(s)	120
BmgT120I	GGNCC	1 cut(s)	120
BmiI	GGNNCC	2 cut(s)	268, 478
BmrFI	CCNGG	1 cut(s)	72
BmsI	GCATC	2 cut(s)	70, 400
Bpu14I	TTCGAA	1 cut(s)	386
BsaAI	YACGTR	1 cut(s)	463
BsaI	GGTCTC	1 cut(s)	26
BsaJI	CCNNGG	1 cut(s)	587
BsaWI	WCCGGW	2 cut(s)	146, 269
Bsc4I	CCNNNNNNNGG	1 cut(s)	539
Bse1I	ACTGG	2 cut(s)	123, 602
BseBI	CCWGG	1 cut(s)	72
BseDI	CCNNGG	1 cut(s)	587
BseLI	CCNNNNNNNGG	1 cut(s)	539
BseNI	ACTGG	2 cut(s)	123, 602
BseSI	GKGCMC	1 cut(s)	264
BseX3I	CGGCCG	1 cut(s)	360
BseXI	GCAGC	1 cut(s)	440
BseYI	CCCAGC	1 cut(s)	36
Bsh1285I	CGRYCG	1 cut(s)	363
BshFI	GGCC	3 cut(s)	362, 410, 595
BsiEI	CGRYCG	1 cut(s)	363
BsiHKAI	GWGCWC	2 cut(s)	99, 264
BsiSI	CCGG	2 cut(s)	147, 270
BslI	CCNNNNNNNGG	1 cut(s)	539
BsmAI	GTCTC	1 cut(s)	26
BsmI	GAATGC	1 cut(s)	314
BsnI	GGCC	3 cut(s)	362, 410, 595
Bso31I	GGTCTC	1 cut(s)	26
Bsp119I	TTCGAA	1 cut(s)	386
Bsp1286I	GDGCHC	2 cut(s)	99, 264
Bsp143I	GATC	4 cut(s)	10, 346, 476, 487
Bsp19I	CCATGG	1 cut(s)	587
BspACI	CCGC	1 cut(s)	359
BspANI	GGCC	3 cut(s)	362, 410, 595
BspLI	GGNNCC	2 cut(s)	268, 478
BspPI	GGATC	2 cut(s)	471, 484
BspT104I	TTCGAA	1 cut(s)	386
BspTNI	GGTCTC	1 cut(s)	26
BsrI	ACTGG	2 cut(s)	123, 602
BssECI	CCNNGG	1 cut(s)	587
BssMI	GATC	4 cut(s)	10, 346, 476, 487
BssT1I	CCWWGG	1 cut(s)	587
Bst2UI	CCWGG	1 cut(s)	72
Bst4CI	ACNGT	3 cut(s)	17, 239, 560
BstBAI	YACGTR	1 cut(s)	463
BstBI	TTCGAA	1 cut(s)	386
BstDSI	CCRYGG	1 cut(s)	587
BstKTI	GATC	4 cut(s)	13, 349, 479, 490
BstMAI	GTCTC	1 cut(s)	26
BstMBI	GATC	4 cut(s)	10, 346, 476, 487
BstMCI	CGRYCG	1 cut(s)	363
BstMWI	GCNNNNNNNGC	1 cut(s)	368
BstNI	CCWGG	1 cut(s)	72
BstNSI	RCATGY	1 cut(s)	532
BstSCI	CCNGG	1 cut(s)	70
BstSLI	GKGCMC	1 cut(s)	264
BstSNI	TACGTA	1 cut(s)	463
BstV1I	GCAGC	1 cut(s)	440
BstX2I	RGATCY	1 cut(s)	476
BstXI	CCANNNNNNTGG	1 cut(s)	418
BstYI	RGATCY	1 cut(s)	476
BstZI	CGGCCG	1 cut(s)	360
BsuRI	GGCC	3 cut(s)	362, 410, 595
BtgI	CCRYGG	1 cut(s)	587
Cfr13I	GGNCC	1 cut(s)	120
CseI	GACGC	1 cut(s)	212
Csp6I	GTAC	1 cut(s)	129
CviAII	CATG	3 cut(s)	248, 529, 588
CviJI	RGCY	9 cut(s)	45, 97, 362, 410, 424, 453, 510, 595, 629
CviKI_1	RGCY	9 cut(s)	45, 97, 362, 410, 424, 453, 510, 595, 629
CviQI	GTAC	1 cut(s)	129
DpnI	GATC	4 cut(s)	12, 348, 478, 489
DpnII	GATC	4 cut(s)	10, 346, 476, 487
DraI	TTTAAA	1 cut(s)	111
EaeI	YGGCCR	3 cut(s)	360, 408, 593
EagI	CGGCCG	1 cut(s)	360
Ecl136II	GAGCTC	1 cut(s)	97
EclXI	CGGCCG	1 cut(s)	360
Eco105I	TACGTA	1 cut(s)	463
Eco130I	CCWWGG	1 cut(s)	587
Eco24I	GRGCYC	1 cut(s)	99
Eco31I	GGTCTC	1 cut(s)	26
Eco47I	GGWCC	1 cut(s)	120
Eco52I	CGGCCG	1 cut(s)	360
Eco53kI	GAGCTC	1 cut(s)	97
EcoICRI	GAGCTC	1 cut(s)	97
EcoRII	CCWGG	1 cut(s)	70
EcoT14I	CCWWGG	1 cut(s)	587
EcoT38I	GRGCYC	1 cut(s)	99
ErhI	CCWWGG	1 cut(s)	587
FaeI	CATG	3 cut(s)	251, 532, 591
FatI	CATG	3 cut(s)	247, 528, 587
FbaI	TGATCA	1 cut(s)	10
Fnu4HI	GCNGC	2 cut(s)	360, 454
FriOI	GRGCYC	1 cut(s)	99
Fsp4HI	GCNGC	2 cut(s)	360, 454
FspBI	CTAG	1 cut(s)	132
GluI	GCNGC	2 cut(s)	360, 454
GsaI	CCCAGC	1 cut(s)	40
HaeIII	GGCC	3 cut(s)	362, 410, 595
HapII	CCGG	2 cut(s)	147, 270
HgaI	GACGC	1 cut(s)	212
Hin1II	CATG	3 cut(s)	251, 532, 591
HindIII	AAGCTT	2 cut(s)	43, 508
HinfI	GANTC	1 cut(s)	468
HpaII	CCGG	2 cut(s)	147, 270
HphI	GGTGA	3 cut(s)	29, 161, 611
Hpy166II	GTNNAC	1 cut(s)	262
Hpy188I	TCNGA	1 cut(s)	351
Hpy8I	GTNNAC	1 cut(s)	262
HpyAV	CCTTC	2 cut(s)	443, 509
HpyCH4III	ACNGT	3 cut(s)	17, 239, 560
HpyCH4IV	ACGT	3 cut(s)	252, 300, 462
HpyCH4V	TGCA	4 cut(s)	86, 262, 283, 314
HpyF10VI	GCNNNNNNNGC	1 cut(s)	368
HpySE526I	ACGT	3 cut(s)	252, 300, 462
Hsp92II	CATG	3 cut(s)	251, 532, 591
Ksp22I	TGATCA	1 cut(s)	10
Kzo9I	GATC	4 cut(s)	10, 346, 476, 487
LmnI	GCTCC	4 cut(s)	94, 102, 368, 421
LpnPI	CCDG	9 cut(s)	50, 57, 84, 136, 160, 283, 357, 615, 622
Lsp1109I	GCAGC	1 cut(s)	440
LweI	GCATC	2 cut(s)	70, 400
MaeI	CTAG	1 cut(s)	132
MaeII	ACGT	3 cut(s)	252, 300, 462
MaeIII	GTNAC	3 cut(s)	140, 179, 554
MalI	GATC	4 cut(s)	12, 348, 478, 489
MboI	GATC	4 cut(s)	10, 346, 476, 487
MboII	GAAGA	3 cut(s)	350, 353, 559
MflI	RGATCY	1 cut(s)	476
MhlI	GDGCHC	2 cut(s)	99, 264
MlsI	TGGCCA	2 cut(s)	410, 595
MluCI	AATT	4 cut(s)	89, 208, 354, 377
MluNI	TGGCCA	2 cut(s)	410, 595
MlyI	GAGTC	1 cut(s)	462
MnlI	CCTC	7 cut(s)	13, 48, 111, 168, 239, 266, 627
Mox20I	TGGCCA	2 cut(s)	410, 595
MscI	TGGCCA	2 cut(s)	410, 595
MseI	TTAA	4 cut(s)	110, 198, 329, 575
Msp20I	TGGCCA	2 cut(s)	410, 595
MspI	CCGG	2 cut(s)	147, 270
MspR9I	CCNGG	1 cut(s)	72
Mva1269I	GAATGC	1 cut(s)	314
MvaI	CCWGG	1 cut(s)	72
MwoI	GCNNNNNNNGC	1 cut(s)	368
NcoI	CCATGG	1 cut(s)	587
NdeII	GATC	4 cut(s)	10, 346, 476, 487
NlaIII	CATG	3 cut(s)	251, 532, 591
NlaIV	GGNNCC	2 cut(s)	268, 478
NspI	RCATGY	1 cut(s)	532
NspV	TTCGAA	1 cut(s)	386
PctI	GAATGC	1 cut(s)	314
PfoI	TCCNGGA	1 cut(s)	70
PkrI	GCNGC	2 cut(s)	361, 455
PleI	GAGTC	1 cut(s)	462
PpsI	GAGTC	1 cut(s)	462
Ppu21I	YACGTR	1 cut(s)	463
PsiI	TTATAA	1 cut(s)	494
Psp124BI	GAGCTC	1 cut(s)	99
Psp6I	CCWGG	1 cut(s)	70
PspFI	CCCAGC	1 cut(s)	36
PspGI	CCWGG	1 cut(s)	70
PspN4I	GGNNCC	2 cut(s)	268, 478
PspPI	GGNCC	1 cut(s)	120
PsuI	RGATCY	1 cut(s)	476
RsaI	GTAC	1 cut(s)	130
RsaNI	GTAC	1 cut(s)	129
SacI	GAGCTC	1 cut(s)	99
SaqAI	TTAA	4 cut(s)	110, 198, 329, 575
SatI	GCNGC	2 cut(s)	360, 454
Sau3AI	GATC	4 cut(s)	10, 346, 476, 487
Sau96I	GGNCC	1 cut(s)	120
ScaI	AGTACT	1 cut(s)	130
SchI	GAGTC	1 cut(s)	462
ScrFI	CCNGG	1 cut(s)	72
SduI	GDGCHC	2 cut(s)	99, 264
SfaNI	GCATC	2 cut(s)	70, 400
SfuI	TTCGAA	1 cut(s)	386
SinI	GGWCC	1 cut(s)	120
SnaBI	TACGTA	1 cut(s)	463
Sse9I	AATT	4 cut(s)	89, 208, 354, 377
SsiI	CCGC	1 cut(s)	359
SspI	AATATT	2 cut(s)	164, 550
SspMI	CTAG	1 cut(s)	132
SstI	GAGCTC	1 cut(s)	99
StyD4I	CCNGG	1 cut(s)	70
StyI	CCWWGG	1 cut(s)	587
TaaI	ACNGT	3 cut(s)	17, 239, 560
TaiI	ACGT	3 cut(s)	255, 303, 465
TaqI	TCGA	2 cut(s)	386, 544
TasI	AATT	4 cut(s)	89, 208, 354, 377
TatI	WGTACW	1 cut(s)	128
TauI	GCSGC	1 cut(s)	362
Tru1I	TTAA	4 cut(s)	110, 198, 329, 575
Tru9I	TTAA	4 cut(s)	110, 198, 329, 575
TseI	GCWGC	1 cut(s)	453
TspDTI	ATGAA	3 cut(s)	307, 462, 539
TspGWI	ACGGA	2 cut(s)	279, 489
VneI	GTGCAC	1 cut(s)	260
VpaK11BI	GGWCC	1 cut(s)	120
XceI	RCATGY	1 cut(s)	532
XspI	CTAG	1 cut(s)	132
ZrmI	AGTACT	1 cut(s)	130

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.