Rw7G035290

A Receptor for Ubiquitination Targets

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr7
Physical Location & Seq
Reverse (-)
52607169 .. 52608626
1458 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw7G035290.1

Sequence Viewer

Length: 1458 bp
ATGTCGCAGTCATTGTCCCTTGAAGTAGTACCACTGGACTCTGTTCATCACTCAAAAAGATCAAAAAGATCATCACCAGCATCAACAACAAGATCAAATTCAAAGTTGATGAATAACACTACTATTGATGATCTCCCTGATGTTGTATTGGTTGACATTCTCAGTCGACTTCCGTGCTTTGATTTTGTGTTAAAATGCAAGTCTGTGTGCAAACGTTGGAGCATTCTCATGTCGGACCCATACTTCATTGGCCGCTTTCTACTTCGACTCCAAAGCCGACATACGCCAATTCCACCACTTACTCTGATCAATCAAAACGGGGAGAACTTCCCTATGGCATTCAATCCTCTTTCACCGCTCAAGTTTCTAACTAGGATGTTCTTAAGACTCATGAGTTCCCTCTCTTTGAAAAAAGAGCCAGTTGTAGTAGGGGCGTGTAATGACCTAGTTTTGTGTTGCGCAAGTGAGTATTTTCAACGTGATTACTTCATCTGTAATCCATATACCACCCAATGGGTTGCTCTTCCTCCTGTCTCTCGAGTTATCCGTGACGTACCAGTTGGATTCATATGTGATCCCTACTATAATTATCATAAGAAAGACAGAGACGAAATGCATCAACCAAAAAGTACTATCATTCAAGACCAGTTGATTAATATTAACGTGGACTATAGGTGCATGGTAGTGAGAATTCTCCCTTATGATGACACATTTGAAGATGAACTTTCCTACAAATTCAAGGTGGAGATCTTCTCTTTCGAGATTGGTGAATGGAGAGAGTCAATTATCTCATTCCCACAAAGATTTAAACTTGATGATATCGATTCCAATGTTCACTTTGCTCACAATGAAATGCTGTATTGGTCGAGTATCTGGGGACATTATAACTTTCTGATTGGGTTGAACCCGTTCATGATCAGCGACGTCACTAATAACAACATCATTAGGACCAGTAGTACTAGCAATAGTAACTCCGGTGATAATCATCAATATTACTATAAATGTCGTTACATTGAACTCGTAGTTAAAGACGCTTATTATGATGAGTTATCTTACCTCCATAACTGGCAACGACAGGGCGTACTTGTGCACGGAGCCGGAGGGTGTCTGCAAATATGTCTCTTAGACGCTGAACATTCTGCATTCATTTGGGAATTGAAAAAAGAAGAAGATGATCTGATGATTGCGGCCGATGGAGCGGGAAAATTGCATGCGAAGCATCTTTTACTACCTTTGACCAAAGAAATGGAGCTGGCTTTAGACCCAAATAATGAAGGCTACTTATATGTAAGACTCAACGGATCCCTTTTTGAACTTATAAACCTTCGTAGAAGCTTGTTATGCGAGATGAACATGCCTGAAAGGGGTCGAATTATTAGTAACTATTGCTTCTTCCCATTAAAAGCGAAACCATGGTGGCCAACACCAGTTCCCAGACTACCTCACCCATCAGCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

485

Amino Acids

56.27

Weight (kDa)

6.57

Isoelectric Point (pI)

47.77

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box PF00646 42 - 82 5e-07 F-box domain
F-box-like PF12937 42 - 82 4.5e-07 F-box-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 885, 1319
AatII GACGTC 1 cut(s) 927
Acc16I TGCGCA 1 cut(s) 460
AccB7I CCANNNNNTGG 1 cut(s) 513
AccBSI CCGCTC 2 cut(s) 358, 1199
AccI GTMKAC 1 cut(s) 166
AciI CCGC 4 cut(s) 253, 356, 1187, 1199
AclI AACGTT 1 cut(s) 214
AclWI GGATC 3 cut(s) 569, 1296, 1309
AcoI YGGCCR 3 cut(s) 250, 1188, 1418
AcsI RAATTY 3 cut(s) 97, 690, 734
AcyI GRCGYC 1 cut(s) 924
AfaI GTAC 5 cut(s) 30, 555, 631, 958, 1083
AfiI CCNNNNNNNGG 2 cut(s) 513, 1364
AflII CTTAAG 1 cut(s) 382
AluBI AGCT 3 cut(s) 1252, 1335, 1454
AluI AGCT 3 cut(s) 1252, 1335, 1454
Alw21I GWGCWC 1 cut(s) 1092
Alw26I GTCTC 3 cut(s) 538, 600, 1124
Alw44I GTGCAC 1 cut(s) 1088
AlwI GGATC 3 cut(s) 569, 1296, 1309
Ama87I CYCGRG 1 cut(s) 537
AoxI GGCC 3 cut(s) 250, 1188, 1418
ApaLI GTGCAC 1 cut(s) 1088
ApoI RAATTY 3 cut(s) 97, 690, 734
AseI ATTAAT 1 cut(s) 654
Asp700I GAANNNNTTC 1 cut(s) 908
AspLEI GCGC 1 cut(s) 461
AspS9I GGNCC 2 cut(s) 235, 948
AsuHPI GGTGA 5 cut(s) 66, 345, 779, 989, 1436
AvaI CYCGRG 1 cut(s) 537
AvaII GGWCC 2 cut(s) 235, 948
BaeGI GKGCMC 1 cut(s) 1092
BalI TGGCCA 1 cut(s) 1420
BamHI GGATCC 1 cut(s) 1301
Bbv12I GWGCWC 1 cut(s) 1092
BccI CCATC 2 cut(s) 1187, 1456
BcgI CGANNNNNNTGC 2 cut(s) 156, 190
BclI TGATCA 2 cut(s) 306, 915
BcoDI GTCTC 3 cut(s) 538, 600, 1124
BfaI CTAG 3 cut(s) 372, 446, 960
BfmI CTRYAG 1 cut(s) 670
BfrI CTTAAG 1 cut(s) 382
BglII AGATCT 1 cut(s) 747
BisI GCNGC 2 cut(s) 253, 1188
BlsI GCNGC 2 cut(s) 254, 1189
BmcAI AGTACT 2 cut(s) 631, 958
Bme18I GGWCC 2 cut(s) 235, 948
BmeT110I CYCGRG 1 cut(s) 537
BmgT120I GGNCC 2 cut(s) 235, 948
BmiI GGNNCC 3 cut(s) 237, 1096, 1303
BmsI GCATC 3 cut(s) 89, 625, 1228
BplI GAGNNNNNCTC 2 cut(s) 737, 769
BpuEI CTTGAG 1 cut(s) 344
Bsa29I ATCGAT 1 cut(s) 822
BsaBI GATNNNNATC 1 cut(s) 984
BsaHI GRCGYC 1 cut(s) 924
BsaJI CCNNGG 1 cut(s) 1412
BsaWI WCCGGW 1 cut(s) 974
BsaXI ACNNNNNCTCC 2 cut(s) 252, 282
Bsc4I CCNNNNNNNGG 2 cut(s) 513, 1364
Bse1I ACTGG 7 cut(s) 39, 419, 557, 646, 951, 1070, 1427
Bse8I GATNNNNATC 1 cut(s) 984
BseCI ATCGAT 1 cut(s) 822
BseDI CCNNGG 1 cut(s) 1412
BseGI GGATG 1 cut(s) 381
BseJI GATNNNNATC 1 cut(s) 984
BseLI CCNNNNNNNGG 2 cut(s) 513, 1364
BseMII CTCAG 1 cut(s) 175
BseNI ACTGG 7 cut(s) 39, 419, 557, 646, 951, 1070, 1427
BseSI GKGCMC 1 cut(s) 1092
BseX3I CGGCCG 1 cut(s) 1188
Bsh1285I CGRYCG 1 cut(s) 1191
BshFI GGCC 3 cut(s) 252, 1190, 1420
BshVI ATCGAT 1 cut(s) 822
BsiEI CGRYCG 1 cut(s) 1191
BsiHKAI GWGCWC 1 cut(s) 1092
BsiHKCI CYCGRG 1 cut(s) 537
BsiSI CCGG 2 cut(s) 975, 1098
BslFI GGGAC 1 cut(s) 891
BslI CCNNNNNNNGG 2 cut(s) 513, 1364
BsmAI GTCTC 3 cut(s) 538, 600, 1124
BsmBI CGTCTC 1 cut(s) 600
BsmFI GGGAC 1 cut(s) 891
BsmI GAATGC 3 cut(s) 222, 338, 1142
BsnI GGCC 3 cut(s) 252, 1190, 1420
BsoBI CYCGRG 1 cut(s) 537
Bsp1286I GDGCHC 1 cut(s) 1092
Bsp19I CCATGG 1 cut(s) 1412
BspACI CCGC 4 cut(s) 253, 356, 1187, 1199
BspANI GGCC 3 cut(s) 252, 1190, 1420
BspCNI CTCAG 1 cut(s) 174
BspDI ATCGAT 1 cut(s) 822
BspHI TCATGA 2 cut(s) 390, 912
BspLI GGNNCC 3 cut(s) 237, 1096, 1303
BspPI GGATC 3 cut(s) 569, 1296, 1309
BspQI GCTCTTC 1 cut(s) 528
BspTI CTTAAG 1 cut(s) 382
BsrBI CCGCTC 2 cut(s) 358, 1199
BsrI ACTGG 7 cut(s) 39, 419, 557, 646, 951, 1070, 1427
BssECI CCNNGG 1 cut(s) 1412
BssNI GRCGYC 1 cut(s) 924
BssT1I CCWWGG 1 cut(s) 1412
Bst6I CTCTTC 1 cut(s) 528
BstACI GRCGYC 1 cut(s) 924
BstAFI CTTAAG 1 cut(s) 382
BstC8I GCNNGC 2 cut(s) 1212, 1254
BstDEI CTNAG 2 cut(s) 161, 1123
BstDSI CCRYGG 1 cut(s) 1412
BstF5I GGATG 1 cut(s) 381
BstHHI GCGC 1 cut(s) 461
BstMAI GTCTC 3 cut(s) 538, 600, 1124
BstMCI CGRYCG 1 cut(s) 1191
BstMWI GCNNNNNNNGC 3 cut(s) 1196, 1216, 1341
BstNSI RCATGY 2 cut(s) 1214, 1357
BstSFI CTRYAG 1 cut(s) 670
BstSLI GKGCMC 1 cut(s) 1092
BstX2I RGATCY 2 cut(s) 747, 1301
BstXI CCANNNNNNTGG 1 cut(s) 1246
BstYI RGATCY 2 cut(s) 747, 1301
BstZI CGGCCG 1 cut(s) 1188
Bsu15I ATCGAT 1 cut(s) 822
BsuRI GGCC 3 cut(s) 252, 1190, 1420
BsuTUI ATCGAT 1 cut(s) 822
BtgI CCRYGG 1 cut(s) 1412
BtsCI GGATG 1 cut(s) 381
BtsIMutI CAGTG 1 cut(s) 32
Cac8I GCNNGC 2 cut(s) 1212, 1254
CciI TCATGA 2 cut(s) 390, 912
CfoI GCGC 1 cut(s) 461
Cfr13I GGNCC 2 cut(s) 235, 948
ClaI ATCGAT 1 cut(s) 822
CseI GACGC 2 cut(s) 1040, 1136
Csp6I GTAC 5 cut(s) 29, 554, 630, 957, 1082
CviAII CATG 7 cut(s) 229, 391, 679, 913, 1211, 1354, 1413
CviQI GTAC 5 cut(s) 29, 554, 630, 957, 1082
DdeI CTNAG 2 cut(s) 161, 1123
DraI TTTAAA 1 cut(s) 808
EaeI YGGCCR 3 cut(s) 250, 1188, 1418
EagI CGGCCG 1 cut(s) 1188
Eam1104I CTCTTC 1 cut(s) 528
EarI CTCTTC 1 cut(s) 528
EclXI CGGCCG 1 cut(s) 1188
Eco130I CCWWGG 1 cut(s) 1412
Eco32I GATATC 1 cut(s) 820
Eco47I GGWCC 2 cut(s) 235, 948
Eco52I CGGCCG 1 cut(s) 1188
Eco88I CYCGRG 1 cut(s) 537
EcoRI GAATTC 1 cut(s) 690
EcoRV GATATC 1 cut(s) 820
EcoT14I CCWWGG 1 cut(s) 1412
EcoT22I ATGCAT 1 cut(s) 618
ErhI CCWWGG 1 cut(s) 1412
Esp3I CGTCTC 1 cut(s) 600
FaeI CATG 7 cut(s) 232, 394, 682, 916, 1214, 1357, 1416
FalI AAGNNNNNCTT 2 cut(s) 708, 740
FaqI GGGAC 1 cut(s) 891
FatI CATG 7 cut(s) 228, 390, 678, 912, 1210, 1353, 1412
FauI CCCGC 1 cut(s) 1192
FauNDI CATATG 1 cut(s) 569
FbaI TGATCA 2 cut(s) 306, 915
FblI GTMKAC 1 cut(s) 166
Fnu4HI GCNGC 2 cut(s) 253, 1188
FokI GGATG 1 cut(s) 388
Fsp4HI GCNGC 2 cut(s) 253, 1188
FspBI CTAG 3 cut(s) 372, 446, 960
FspI TGCGCA 1 cut(s) 460
GlaI GCGC 1 cut(s) 460
GluI GCNGC 2 cut(s) 253, 1188
HaeIII GGCC 3 cut(s) 252, 1190, 1420
HapII CCGG 2 cut(s) 975, 1098
HgaI GACGC 2 cut(s) 1040, 1136
HhaI GCGC 1 cut(s) 461
Hin1I GRCGYC 1 cut(s) 924
Hin1II CATG 7 cut(s) 232, 394, 682, 916, 1214, 1357, 1416
Hin6I GCGC 1 cut(s) 459
HinP1I GCGC 1 cut(s) 459
HincII GTYRAC 2 cut(s) 154, 167
HindII GTYRAC 2 cut(s) 154, 167
HindIII AAGCTT 1 cut(s) 1333
HinfI GANTC 7 cut(s) 38, 267, 387, 564, 779, 824, 1293
HpaII CCGG 2 cut(s) 975, 1098
HphI GGTGA 5 cut(s) 66, 345, 779, 989, 1436
Hpy166II GTNNAC 5 cut(s) 154, 167, 667, 835, 1090
Hpy188I TCNGA 4 cut(s) 235, 306, 894, 1179
Hpy188III TCNNGA 5 cut(s) 391, 537, 641, 760, 913
Hpy8I GTNNAC 5 cut(s) 154, 167, 667, 835, 1090
Hpy99I CGWCG 1 cut(s) 926
HpyAV CCTTC 2 cut(s) 1268, 1334
HpyCH4IV ACGT 5 cut(s) 214, 478, 552, 663, 924
HpyCH4V TGCA 8 cut(s) 198, 210, 616, 678, 1090, 1111, 1142, 1210
HpyF10VI GCNNNNNNNGC 3 cut(s) 1196, 1216, 1341
HpyF3I CTNAG 2 cut(s) 161, 1123
HpySE526I ACGT 5 cut(s) 214, 478, 552, 663, 924
Hsp92I GRCGYC 1 cut(s) 924
Hsp92II CATG 7 cut(s) 232, 394, 682, 916, 1214, 1357, 1416
HspAI GCGC 1 cut(s) 459
Ksp22I TGATCA 2 cut(s) 306, 915
LguI GCTCTTC 1 cut(s) 528
LmnI GCTCC 4 cut(s) 219, 1094, 1196, 1249
LweI GCATC 3 cut(s) 89, 625, 1228
MaeI CTAG 3 cut(s) 372, 446, 960
MaeII ACGT 5 cut(s) 214, 478, 552, 663, 924
MaeIII GTNAC 5 cut(s) 548, 925, 968, 1007, 1379
MbiI CCGCTC 2 cut(s) 358, 1199
MboII GAAGA 6 cut(s) 515, 728, 742, 1178, 1181, 1384
MflI RGATCY 2 cut(s) 747, 1301
MhlI GDGCHC 1 cut(s) 1092
MlsI TGGCCA 1 cut(s) 1420
MluCI AATT 9 cut(s) 97, 288, 586, 690, 734, 783, 1154, 1205, 1371
MluNI TGGCCA 1 cut(s) 1420
MlyI GAGTC 5 cut(s) 32, 261, 381, 788, 1287
MmeI TCCRAC 3 cut(s) 197, 213, 541
MnlI CCTC 6 cut(s) 357, 410, 537, 1067, 1094, 1452
Mox20I TGGCCA 1 cut(s) 1420
Mph1103I ATGCAT 1 cut(s) 618
MroXI GAANNNNTTC 1 cut(s) 908
MscI TGGCCA 1 cut(s) 1420
MseI TTAA 7 cut(s) 191, 383, 654, 660, 807, 1026, 1400
MslI CAYNNNNRTG 2 cut(s) 227, 683
Msp20I TGGCCA 1 cut(s) 1420
MspCI CTTAAG 1 cut(s) 382
MspI CCGG 2 cut(s) 975, 1098
Mva1269I GAATGC 3 cut(s) 222, 338, 1142
MwoI GCNNNNNNNGC 3 cut(s) 1196, 1216, 1341
NcoI CCATGG 1 cut(s) 1412
NdeI CATATG 1 cut(s) 569
NlaIII CATG 7 cut(s) 232, 394, 682, 916, 1214, 1357, 1416
NlaIV GGNNCC 3 cut(s) 237, 1096, 1303
NmuCI GTSAC 2 cut(s) 548, 925
NsbI TGCGCA 1 cut(s) 460
NsiI ATGCAT 1 cut(s) 618
NspI RCATGY 2 cut(s) 1214, 1357
PaeI GCATGC 1 cut(s) 1214
PaeR7I CTCGAG 1 cut(s) 537
PagI TCATGA 2 cut(s) 390, 912
PciSI GCTCTTC 1 cut(s) 528
PcsI WCGNNNNNNNCGW 1 cut(s) 544
PctI GAATGC 3 cut(s) 222, 338, 1142
PdmI GAANNNNTTC 1 cut(s) 908
PfeI GAWTC 2 cut(s) 564, 824
PflMI CCANNNNNTGG 1 cut(s) 513
PkrI GCNGC 2 cut(s) 254, 1189
PleI GAGTC 5 cut(s) 32, 261, 381, 787, 1287
PpsI GAGTC 5 cut(s) 32, 261, 381, 787, 1287
PshBI ATTAAT 1 cut(s) 654
PsiI TTATAA 2 cut(s) 885, 1319
Psp1406I AACGTT 1 cut(s) 214
PspN4I GGNNCC 3 cut(s) 237, 1096, 1303
PspPI GGNCC 2 cut(s) 235, 948
PsuI RGATCY 2 cut(s) 747, 1301
RsaI GTAC 5 cut(s) 30, 555, 631, 958, 1083
RsaNI GTAC 5 cut(s) 29, 554, 630, 957, 1082
RseI CAYNNNNRTG 2 cut(s) 227, 683
SalI GTCGAC 1 cut(s) 165
SapI GCTCTTC 1 cut(s) 528
SaqAI TTAA 7 cut(s) 191, 383, 654, 660, 807, 1026, 1400
SatI GCNGC 2 cut(s) 253, 1188
Sau96I GGNCC 2 cut(s) 235, 948
ScaI AGTACT 2 cut(s) 631, 958
SchI GAGTC 5 cut(s) 32, 261, 381, 788, 1287
SduI GDGCHC 1 cut(s) 1092
SfaNI GCATC 3 cut(s) 89, 625, 1228
SfcI CTRYAG 1 cut(s) 670
Sfr274I CTCGAG 1 cut(s) 537
SinI GGWCC 2 cut(s) 235, 948
SlaI CTCGAG 1 cut(s) 537
SmiMI CAYNNNNRTG 2 cut(s) 227, 683
SmlI CTYRAG 3 cut(s) 359, 382, 537
SmoI CTYRAG 3 cut(s) 359, 382, 537
SphI GCATGC 1 cut(s) 1214
Sse9I AATT 9 cut(s) 97, 288, 586, 690, 734, 783, 1154, 1205, 1371
SsiI CCGC 4 cut(s) 253, 356, 1187, 1199
SspI AATATT 2 cut(s) 658, 992
SspMI CTAG 3 cut(s) 372, 446, 960
StyI CCWWGG 1 cut(s) 1412
TaiI ACGT 5 cut(s) 217, 481, 555, 666, 927
TaqI TCGA 7 cut(s) 166, 265, 538, 759, 822, 866, 1369
TasI AATT 9 cut(s) 97, 288, 586, 690, 734, 783, 1154, 1205, 1371
TatI WGTACW 2 cut(s) 629, 956
TauI GCSGC 2 cut(s) 255, 1190
TfiI GAWTC 2 cut(s) 564, 824
Tru1I TTAA 7 cut(s) 191, 383, 654, 660, 807, 1026, 1400
Tru9I TTAA 7 cut(s) 191, 383, 654, 660, 807, 1026, 1400
TscAI CASTG 1 cut(s) 39
TseFI GTSAC 2 cut(s) 548, 925
Tsp45I GTSAC 2 cut(s) 548, 925
TspGWI ACGGA 4 cut(s) 162, 536, 1107, 1314
TspRI CASTG 1 cut(s) 39
Van91I CCANNNNNTGG 1 cut(s) 513
Vha464I CTTAAG 1 cut(s) 382
VneI GTGCAC 1 cut(s) 1088
VpaK11BI GGWCC 2 cut(s) 235, 948
VspI ATTAAT 1 cut(s) 654
XapI RAATTY 3 cut(s) 97, 690, 734
XceI RCATGY 2 cut(s) 1214, 1357
XhoI CTCGAG 1 cut(s) 537
XmiI GTMKAC 1 cut(s) 166
XmnI GAANNNNTTC 1 cut(s) 908
XspI CTAG 3 cut(s) 372, 446, 960
ZraI GACGTC 1 cut(s) 925
ZrmI AGTACT 2 cut(s) 631, 958
Zsp2I ATGCAT 1 cut(s) 618
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.