A Receptor for Ubiquitination Targets
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| Species | Orthologous Gene IDs |
|---|---|
| fragaria_vesca | FvH4_7g31431 |
| rosa_chinensis | RchiOBHm_Chr1g0380481 |
| rosa_laevigata | RLG00000001340 RLG00000002701 RLG00000026293 RLG00000026297 |
| rosa_multiflora | Rmu_sc0000945.1_g000007 Rmu_sc0001733.1_g000007 Rmu_sc0006267.1_g000004 |
| rosa_roxburghii | Rroxscaffold_3G00228330 Rroxscaffold_3G00228570 Rroxscaffold_3G00244720 Rroxscaffold_4G00279310 Rroxscaffold_4G00279330 |
| rosa_rugosa | Rorug07G0270400 |
| rosa_samantha | Rh1CG415600 Rh1DG431400 Rh7AG286300 Rh7AG425300 Rh7AG425800 Rh7DG289700 Rh7DG416900 Rh7DG417100 |
| rosa_wichuraiana | Rw7G035160 Rw7G035250 Rw7G035290 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 2 cut(s) | 885, 1319 |
| AatII | GACGTC | 1 cut(s) | 927 |
| Acc16I | TGCGCA | 1 cut(s) | 460 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 513 |
| AccBSI | CCGCTC | 2 cut(s) | 358, 1199 |
| AccI | GTMKAC | 1 cut(s) | 166 |
| AciI | CCGC | 4 cut(s) | 253, 356, 1187, 1199 |
| AclI | AACGTT | 1 cut(s) | 214 |
| AclWI | GGATC | 3 cut(s) | 569, 1296, 1309 |
| AcoI | YGGCCR | 3 cut(s) | 250, 1188, 1418 |
| AcsI | RAATTY | 3 cut(s) | 97, 690, 734 |
| AcyI | GRCGYC | 1 cut(s) | 924 |
| AfaI | GTAC | 5 cut(s) | 30, 555, 631, 958, 1083 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 513, 1364 |
| AflII | CTTAAG | 1 cut(s) | 382 |
| AluBI | AGCT | 3 cut(s) | 1252, 1335, 1454 |
| AluI | AGCT | 3 cut(s) | 1252, 1335, 1454 |
| Alw21I | GWGCWC | 1 cut(s) | 1092 |
| Alw26I | GTCTC | 3 cut(s) | 538, 600, 1124 |
| Alw44I | GTGCAC | 1 cut(s) | 1088 |
| AlwI | GGATC | 3 cut(s) | 569, 1296, 1309 |
| Ama87I | CYCGRG | 1 cut(s) | 537 |
| AoxI | GGCC | 3 cut(s) | 250, 1188, 1418 |
| ApaLI | GTGCAC | 1 cut(s) | 1088 |
| ApoI | RAATTY | 3 cut(s) | 97, 690, 734 |
| AseI | ATTAAT | 1 cut(s) | 654 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 908 |
| AspLEI | GCGC | 1 cut(s) | 461 |
| AspS9I | GGNCC | 2 cut(s) | 235, 948 |
| AsuHPI | GGTGA | 5 cut(s) | 66, 345, 779, 989, 1436 |
| AvaI | CYCGRG | 1 cut(s) | 537 |
| AvaII | GGWCC | 2 cut(s) | 235, 948 |
| BaeGI | GKGCMC | 1 cut(s) | 1092 |
| BalI | TGGCCA | 1 cut(s) | 1420 |
| BamHI | GGATCC | 1 cut(s) | 1301 |
| Bbv12I | GWGCWC | 1 cut(s) | 1092 |
| BccI | CCATC | 2 cut(s) | 1187, 1456 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 156, 190 |
| BclI | TGATCA | 2 cut(s) | 306, 915 |
| BcoDI | GTCTC | 3 cut(s) | 538, 600, 1124 |
| BfaI | CTAG | 3 cut(s) | 372, 446, 960 |
| BfmI | CTRYAG | 1 cut(s) | 670 |
| BfrI | CTTAAG | 1 cut(s) | 382 |
| BglII | AGATCT | 1 cut(s) | 747 |
| BisI | GCNGC | 2 cut(s) | 253, 1188 |
| BlsI | GCNGC | 2 cut(s) | 254, 1189 |
| BmcAI | AGTACT | 2 cut(s) | 631, 958 |
| Bme18I | GGWCC | 2 cut(s) | 235, 948 |
| BmeT110I | CYCGRG | 1 cut(s) | 537 |
| BmgT120I | GGNCC | 2 cut(s) | 235, 948 |
| BmiI | GGNNCC | 3 cut(s) | 237, 1096, 1303 |
| BmsI | GCATC | 3 cut(s) | 89, 625, 1228 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 737, 769 |
| BpuEI | CTTGAG | 1 cut(s) | 344 |
| Bsa29I | ATCGAT | 1 cut(s) | 822 |
| BsaBI | GATNNNNATC | 1 cut(s) | 984 |
| BsaHI | GRCGYC | 1 cut(s) | 924 |
| BsaJI | CCNNGG | 1 cut(s) | 1412 |
| BsaWI | WCCGGW | 1 cut(s) | 974 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 252, 282 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 513, 1364 |
| Bse1I | ACTGG | 7 cut(s) | 39, 419, 557, 646, 951, 1070, 1427 |
| Bse8I | GATNNNNATC | 1 cut(s) | 984 |
| BseCI | ATCGAT | 1 cut(s) | 822 |
| BseDI | CCNNGG | 1 cut(s) | 1412 |
| BseGI | GGATG | 1 cut(s) | 381 |
| BseJI | GATNNNNATC | 1 cut(s) | 984 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 513, 1364 |
| BseMII | CTCAG | 1 cut(s) | 175 |
| BseNI | ACTGG | 7 cut(s) | 39, 419, 557, 646, 951, 1070, 1427 |
| BseSI | GKGCMC | 1 cut(s) | 1092 |
| BseX3I | CGGCCG | 1 cut(s) | 1188 |
| Bsh1285I | CGRYCG | 1 cut(s) | 1191 |
| BshFI | GGCC | 3 cut(s) | 252, 1190, 1420 |
| BshVI | ATCGAT | 1 cut(s) | 822 |
| BsiEI | CGRYCG | 1 cut(s) | 1191 |
| BsiHKAI | GWGCWC | 1 cut(s) | 1092 |
| BsiHKCI | CYCGRG | 1 cut(s) | 537 |
| BsiSI | CCGG | 2 cut(s) | 975, 1098 |
| BslFI | GGGAC | 1 cut(s) | 891 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 513, 1364 |
| BsmAI | GTCTC | 3 cut(s) | 538, 600, 1124 |
| BsmBI | CGTCTC | 1 cut(s) | 600 |
| BsmFI | GGGAC | 1 cut(s) | 891 |
| BsmI | GAATGC | 3 cut(s) | 222, 338, 1142 |
| BsnI | GGCC | 3 cut(s) | 252, 1190, 1420 |
| BsoBI | CYCGRG | 1 cut(s) | 537 |
| Bsp1286I | GDGCHC | 1 cut(s) | 1092 |
| Bsp19I | CCATGG | 1 cut(s) | 1412 |
| BspACI | CCGC | 4 cut(s) | 253, 356, 1187, 1199 |
| BspANI | GGCC | 3 cut(s) | 252, 1190, 1420 |
| BspCNI | CTCAG | 1 cut(s) | 174 |
| BspDI | ATCGAT | 1 cut(s) | 822 |
| BspHI | TCATGA | 2 cut(s) | 390, 912 |
| BspLI | GGNNCC | 3 cut(s) | 237, 1096, 1303 |
| BspPI | GGATC | 3 cut(s) | 569, 1296, 1309 |
| BspQI | GCTCTTC | 1 cut(s) | 528 |
| BspTI | CTTAAG | 1 cut(s) | 382 |
| BsrBI | CCGCTC | 2 cut(s) | 358, 1199 |
| BsrI | ACTGG | 7 cut(s) | 39, 419, 557, 646, 951, 1070, 1427 |
| BssECI | CCNNGG | 1 cut(s) | 1412 |
| BssNI | GRCGYC | 1 cut(s) | 924 |
| BssT1I | CCWWGG | 1 cut(s) | 1412 |
| Bst6I | CTCTTC | 1 cut(s) | 528 |
| BstACI | GRCGYC | 1 cut(s) | 924 |
| BstAFI | CTTAAG | 1 cut(s) | 382 |
| BstC8I | GCNNGC | 2 cut(s) | 1212, 1254 |
| BstDEI | CTNAG | 2 cut(s) | 161, 1123 |
| BstDSI | CCRYGG | 1 cut(s) | 1412 |
| BstF5I | GGATG | 1 cut(s) | 381 |
| BstHHI | GCGC | 1 cut(s) | 461 |
| BstMAI | GTCTC | 3 cut(s) | 538, 600, 1124 |
| BstMCI | CGRYCG | 1 cut(s) | 1191 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 1196, 1216, 1341 |
| BstNSI | RCATGY | 2 cut(s) | 1214, 1357 |
| BstSFI | CTRYAG | 1 cut(s) | 670 |
| BstSLI | GKGCMC | 1 cut(s) | 1092 |
| BstX2I | RGATCY | 2 cut(s) | 747, 1301 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 1246 |
| BstYI | RGATCY | 2 cut(s) | 747, 1301 |
| BstZI | CGGCCG | 1 cut(s) | 1188 |
| Bsu15I | ATCGAT | 1 cut(s) | 822 |
| BsuRI | GGCC | 3 cut(s) | 252, 1190, 1420 |
| BsuTUI | ATCGAT | 1 cut(s) | 822 |
| BtgI | CCRYGG | 1 cut(s) | 1412 |
| BtsCI | GGATG | 1 cut(s) | 381 |
| BtsIMutI | CAGTG | 1 cut(s) | 32 |
| Cac8I | GCNNGC | 2 cut(s) | 1212, 1254 |
| CciI | TCATGA | 2 cut(s) | 390, 912 |
| CfoI | GCGC | 1 cut(s) | 461 |
| Cfr13I | GGNCC | 2 cut(s) | 235, 948 |
| ClaI | ATCGAT | 1 cut(s) | 822 |
| CseI | GACGC | 2 cut(s) | 1040, 1136 |
| Csp6I | GTAC | 5 cut(s) | 29, 554, 630, 957, 1082 |
| CviAII | CATG | 7 cut(s) | 229, 391, 679, 913, 1211, 1354, 1413 |
| CviQI | GTAC | 5 cut(s) | 29, 554, 630, 957, 1082 |
| DdeI | CTNAG | 2 cut(s) | 161, 1123 |
| DraI | TTTAAA | 1 cut(s) | 808 |
| EaeI | YGGCCR | 3 cut(s) | 250, 1188, 1418 |
| EagI | CGGCCG | 1 cut(s) | 1188 |
| Eam1104I | CTCTTC | 1 cut(s) | 528 |
| EarI | CTCTTC | 1 cut(s) | 528 |
| EclXI | CGGCCG | 1 cut(s) | 1188 |
| Eco130I | CCWWGG | 1 cut(s) | 1412 |
| Eco32I | GATATC | 1 cut(s) | 820 |
| Eco47I | GGWCC | 2 cut(s) | 235, 948 |
| Eco52I | CGGCCG | 1 cut(s) | 1188 |
| Eco88I | CYCGRG | 1 cut(s) | 537 |
| EcoRI | GAATTC | 1 cut(s) | 690 |
| EcoRV | GATATC | 1 cut(s) | 820 |
| EcoT14I | CCWWGG | 1 cut(s) | 1412 |
| EcoT22I | ATGCAT | 1 cut(s) | 618 |
| ErhI | CCWWGG | 1 cut(s) | 1412 |
| Esp3I | CGTCTC | 1 cut(s) | 600 |
| FaeI | CATG | 7 cut(s) | 232, 394, 682, 916, 1214, 1357, 1416 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 708, 740 |
| FaqI | GGGAC | 1 cut(s) | 891 |
| FatI | CATG | 7 cut(s) | 228, 390, 678, 912, 1210, 1353, 1412 |
| FauI | CCCGC | 1 cut(s) | 1192 |
| FauNDI | CATATG | 1 cut(s) | 569 |
| FbaI | TGATCA | 2 cut(s) | 306, 915 |
| FblI | GTMKAC | 1 cut(s) | 166 |
| Fnu4HI | GCNGC | 2 cut(s) | 253, 1188 |
| FokI | GGATG | 1 cut(s) | 388 |
| Fsp4HI | GCNGC | 2 cut(s) | 253, 1188 |
| FspBI | CTAG | 3 cut(s) | 372, 446, 960 |
| FspI | TGCGCA | 1 cut(s) | 460 |
| GlaI | GCGC | 1 cut(s) | 460 |
| GluI | GCNGC | 2 cut(s) | 253, 1188 |
| HaeIII | GGCC | 3 cut(s) | 252, 1190, 1420 |
| HapII | CCGG | 2 cut(s) | 975, 1098 |
| HgaI | GACGC | 2 cut(s) | 1040, 1136 |
| HhaI | GCGC | 1 cut(s) | 461 |
| Hin1I | GRCGYC | 1 cut(s) | 924 |
| Hin1II | CATG | 7 cut(s) | 232, 394, 682, 916, 1214, 1357, 1416 |
| Hin6I | GCGC | 1 cut(s) | 459 |
| HinP1I | GCGC | 1 cut(s) | 459 |
| HincII | GTYRAC | 2 cut(s) | 154, 167 |
| HindII | GTYRAC | 2 cut(s) | 154, 167 |
| HindIII | AAGCTT | 1 cut(s) | 1333 |
| HinfI | GANTC | 7 cut(s) | 38, 267, 387, 564, 779, 824, 1293 |
| HpaII | CCGG | 2 cut(s) | 975, 1098 |
| HphI | GGTGA | 5 cut(s) | 66, 345, 779, 989, 1436 |
| Hpy166II | GTNNAC | 5 cut(s) | 154, 167, 667, 835, 1090 |
| Hpy188I | TCNGA | 4 cut(s) | 235, 306, 894, 1179 |
| Hpy188III | TCNNGA | 5 cut(s) | 391, 537, 641, 760, 913 |
| Hpy8I | GTNNAC | 5 cut(s) | 154, 167, 667, 835, 1090 |
| Hpy99I | CGWCG | 1 cut(s) | 926 |
| HpyAV | CCTTC | 2 cut(s) | 1268, 1334 |
| HpyCH4IV | ACGT | 5 cut(s) | 214, 478, 552, 663, 924 |
| HpyCH4V | TGCA | 8 cut(s) | 198, 210, 616, 678, 1090, 1111, 1142, 1210 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 1196, 1216, 1341 |
| HpyF3I | CTNAG | 2 cut(s) | 161, 1123 |
| HpySE526I | ACGT | 5 cut(s) | 214, 478, 552, 663, 924 |
| Hsp92I | GRCGYC | 1 cut(s) | 924 |
| Hsp92II | CATG | 7 cut(s) | 232, 394, 682, 916, 1214, 1357, 1416 |
| HspAI | GCGC | 1 cut(s) | 459 |
| Ksp22I | TGATCA | 2 cut(s) | 306, 915 |
| LguI | GCTCTTC | 1 cut(s) | 528 |
| LmnI | GCTCC | 4 cut(s) | 219, 1094, 1196, 1249 |
| LweI | GCATC | 3 cut(s) | 89, 625, 1228 |
| MaeI | CTAG | 3 cut(s) | 372, 446, 960 |
| MaeII | ACGT | 5 cut(s) | 214, 478, 552, 663, 924 |
| MaeIII | GTNAC | 5 cut(s) | 548, 925, 968, 1007, 1379 |
| MbiI | CCGCTC | 2 cut(s) | 358, 1199 |
| MboII | GAAGA | 6 cut(s) | 515, 728, 742, 1178, 1181, 1384 |
| MflI | RGATCY | 2 cut(s) | 747, 1301 |
| MhlI | GDGCHC | 1 cut(s) | 1092 |
| MlsI | TGGCCA | 1 cut(s) | 1420 |
| MluCI | AATT | 9 cut(s) | 97, 288, 586, 690, 734, 783, 1154, 1205, 1371 |
| MluNI | TGGCCA | 1 cut(s) | 1420 |
| MlyI | GAGTC | 5 cut(s) | 32, 261, 381, 788, 1287 |
| MmeI | TCCRAC | 3 cut(s) | 197, 213, 541 |
| MnlI | CCTC | 6 cut(s) | 357, 410, 537, 1067, 1094, 1452 |
| Mox20I | TGGCCA | 1 cut(s) | 1420 |
| Mph1103I | ATGCAT | 1 cut(s) | 618 |
| MroXI | GAANNNNTTC | 1 cut(s) | 908 |
| MscI | TGGCCA | 1 cut(s) | 1420 |
| MseI | TTAA | 7 cut(s) | 191, 383, 654, 660, 807, 1026, 1400 |
| MslI | CAYNNNNRTG | 2 cut(s) | 227, 683 |
| Msp20I | TGGCCA | 1 cut(s) | 1420 |
| MspCI | CTTAAG | 1 cut(s) | 382 |
| MspI | CCGG | 2 cut(s) | 975, 1098 |
| Mva1269I | GAATGC | 3 cut(s) | 222, 338, 1142 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 1196, 1216, 1341 |
| NcoI | CCATGG | 1 cut(s) | 1412 |
| NdeI | CATATG | 1 cut(s) | 569 |
| NlaIII | CATG | 7 cut(s) | 232, 394, 682, 916, 1214, 1357, 1416 |
| NlaIV | GGNNCC | 3 cut(s) | 237, 1096, 1303 |
| NmuCI | GTSAC | 2 cut(s) | 548, 925 |
| NsbI | TGCGCA | 1 cut(s) | 460 |
| NsiI | ATGCAT | 1 cut(s) | 618 |
| NspI | RCATGY | 2 cut(s) | 1214, 1357 |
| PaeI | GCATGC | 1 cut(s) | 1214 |
| PaeR7I | CTCGAG | 1 cut(s) | 537 |
| PagI | TCATGA | 2 cut(s) | 390, 912 |
| PciSI | GCTCTTC | 1 cut(s) | 528 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 544 |
| PctI | GAATGC | 3 cut(s) | 222, 338, 1142 |
| PdmI | GAANNNNTTC | 1 cut(s) | 908 |
| PfeI | GAWTC | 2 cut(s) | 564, 824 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 513 |
| PkrI | GCNGC | 2 cut(s) | 254, 1189 |
| PleI | GAGTC | 5 cut(s) | 32, 261, 381, 787, 1287 |
| PpsI | GAGTC | 5 cut(s) | 32, 261, 381, 787, 1287 |
| PshBI | ATTAAT | 1 cut(s) | 654 |
| PsiI | TTATAA | 2 cut(s) | 885, 1319 |
| Psp1406I | AACGTT | 1 cut(s) | 214 |
| PspN4I | GGNNCC | 3 cut(s) | 237, 1096, 1303 |
| PspPI | GGNCC | 2 cut(s) | 235, 948 |
| PsuI | RGATCY | 2 cut(s) | 747, 1301 |
| RsaI | GTAC | 5 cut(s) | 30, 555, 631, 958, 1083 |
| RsaNI | GTAC | 5 cut(s) | 29, 554, 630, 957, 1082 |
| RseI | CAYNNNNRTG | 2 cut(s) | 227, 683 |
| SalI | GTCGAC | 1 cut(s) | 165 |
| SapI | GCTCTTC | 1 cut(s) | 528 |
| SaqAI | TTAA | 7 cut(s) | 191, 383, 654, 660, 807, 1026, 1400 |
| SatI | GCNGC | 2 cut(s) | 253, 1188 |
| Sau96I | GGNCC | 2 cut(s) | 235, 948 |
| ScaI | AGTACT | 2 cut(s) | 631, 958 |
| SchI | GAGTC | 5 cut(s) | 32, 261, 381, 788, 1287 |
| SduI | GDGCHC | 1 cut(s) | 1092 |
| SfaNI | GCATC | 3 cut(s) | 89, 625, 1228 |
| SfcI | CTRYAG | 1 cut(s) | 670 |
| Sfr274I | CTCGAG | 1 cut(s) | 537 |
| SinI | GGWCC | 2 cut(s) | 235, 948 |
| SlaI | CTCGAG | 1 cut(s) | 537 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 227, 683 |
| SmlI | CTYRAG | 3 cut(s) | 359, 382, 537 |
| SmoI | CTYRAG | 3 cut(s) | 359, 382, 537 |
| SphI | GCATGC | 1 cut(s) | 1214 |
| Sse9I | AATT | 9 cut(s) | 97, 288, 586, 690, 734, 783, 1154, 1205, 1371 |
| SsiI | CCGC | 4 cut(s) | 253, 356, 1187, 1199 |
| SspI | AATATT | 2 cut(s) | 658, 992 |
| SspMI | CTAG | 3 cut(s) | 372, 446, 960 |
| StyI | CCWWGG | 1 cut(s) | 1412 |
| TaiI | ACGT | 5 cut(s) | 217, 481, 555, 666, 927 |
| TaqI | TCGA | 7 cut(s) | 166, 265, 538, 759, 822, 866, 1369 |
| TasI | AATT | 9 cut(s) | 97, 288, 586, 690, 734, 783, 1154, 1205, 1371 |
| TatI | WGTACW | 2 cut(s) | 629, 956 |
| TauI | GCSGC | 2 cut(s) | 255, 1190 |
| TfiI | GAWTC | 2 cut(s) | 564, 824 |
| Tru1I | TTAA | 7 cut(s) | 191, 383, 654, 660, 807, 1026, 1400 |
| Tru9I | TTAA | 7 cut(s) | 191, 383, 654, 660, 807, 1026, 1400 |
| TscAI | CASTG | 1 cut(s) | 39 |
| TseFI | GTSAC | 2 cut(s) | 548, 925 |
| Tsp45I | GTSAC | 2 cut(s) | 548, 925 |
| TspGWI | ACGGA | 4 cut(s) | 162, 536, 1107, 1314 |
| TspRI | CASTG | 1 cut(s) | 39 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 513 |
| Vha464I | CTTAAG | 1 cut(s) | 382 |
| VneI | GTGCAC | 1 cut(s) | 1088 |
| VpaK11BI | GGWCC | 2 cut(s) | 235, 948 |
| VspI | ATTAAT | 1 cut(s) | 654 |
| XapI | RAATTY | 3 cut(s) | 97, 690, 734 |
| XceI | RCATGY | 2 cut(s) | 1214, 1357 |
| XhoI | CTCGAG | 1 cut(s) | 537 |
| XmiI | GTMKAC | 1 cut(s) | 166 |
| XmnI | GAANNNNTTC | 1 cut(s) | 908 |
| XspI | CTAG | 3 cut(s) | 372, 446, 960 |
| ZraI | GACGTC | 1 cut(s) | 925 |
| ZrmI | AGTACT | 2 cut(s) | 631, 958 |
| Zsp2I | ATGCAT | 1 cut(s) | 618 |