Rh7DG416900

A Receptor for Ubiquitination Targets

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7D
OG0006952
Physical Location & Seq
Reverse (-)
58673111 .. 58674872
1762 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7DG416900.1

Sequence Viewer

Length: 1500 bp
ATGGGAGGTAGTGATACTACCAAAAGAAAAGAAAGATCCAGTACAATATCCCAGTCATTGTCCCTTGAAGCAGTACCACTGGACTCTGTTCATCACTCAAAAAGATCAAAAAGTTCATCATCAGCATCAACAACAAGATCAAATTCAAAGTTGATGAATAACACTATTGATGATCTCCCTGATGTTGTATTGGTTGACATTCTCTGTCGACTTCCGTGCTTTGATTTTGTGTTCAAATGCAAGTCTGTGTGCAAACGTTGGAGCATTCTCATGTCGGAACCATACTTCATTGGCCGCTTTCTACTTCGACTCCAAAGCCGACATACGCCAATTCCACCACTTACGCTGATCAATCAAAAGGGGGAGAACTTCCCTATGGCATTCAATCCTCTTTCACCTCTCAAGTTTCTAACTAGGATGTTCTTAAGACTCATGAGTTCCCTCTCTTTAAAAAAAGAGCCAGTTGTAGTAGGGGCGAGGAATGACTTGGTTTTGTGTTGCGCAAGTGAGTATTTTCAACGTGATTACTTCATCTGTAATCCATATACCACCCAATGGGTTGCTCTTCCCCCTGTCTCTCGAGTTCTCCGTGACGTACCAGTTGGATTCATATGTGATCCCTACTATAATTATCATAAGAAAGAAGAGGAAGTGCATCAAACAAAAAGTACTATCATACAAGATAAGTTGATTAATATTAACGTGGACTATAGGTGCATGGTAGTGAGAATTCTTCCTTATGATGACACATTTGAAGATGAACTTTCCTACAAATTCAAGGTGGAGATCTTCTCTTTCGAGATTGGTGAATGGAGAGAGTCAATTATCTCATTCCCACAAAGATTTAAACTTGATGATATCGATTCCAATGTTCACTTTGCTTACAATGAAATGCTGTATTGGTCGAGTATGTGGGGAGATTATAACTTTCTGATTGGGTTGAACCCGTTCATGATCAGCGACGTCACTAATAACAACATCATCAGGACCAGTAGTACTAGCAATAGTAACTCCGGTGATAATCCTCAATATTACCCTAAATGTCGTTACATTGAACTCATAGTTAAAGACGCTAATTTTGATGAGTTATCTTACCTCCATAACTGTCAAATACATGACGTAGTTGTGCACGGAACCGGAGGGTATCTGCAAATATGTCGTTTAGACGTTGAACATTCTGCATTCATTTGGGAGTTAAAAAAAGAAGAAGATGATCTGATAATTGCGGCCGATGGAGCAGGAAAATTGTATTCGAAGCATCTTTTACTGCCTTTGGCCAAAGAAATGGAGCTGATTGGTTTAGACCCATATAATGAAGGCTGCTTATACGTAAGACTCAACGGATCCCTTTTTGATCTTATAAACCTTCGTAGAAGCTTGTTATACGAGATGAACATGCCTAAAACGGGTCGAAATATTAGTAACTATTGCTTCTTCCCATTAAAAGCGAAACCATGGTGGCCAACACCAGTTCCCAGACTACCTCACCCATCAGCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box

Protein Analysis

499

Amino Acids

57.67

Weight (kDa)

6.86

Isoelectric Point (pI)

43.77

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box PF00646 56 - 95 1.7e-06 F-box domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 924, 1361
AatII GACGTC 1 cut(s) 966
Acc16I TGCGCA 1 cut(s) 502
AccB7I CCANNNNNTGG 1 cut(s) 555
AccI GTMKAC 1 cut(s) 208
AciI CCGC 2 cut(s) 295, 1226
AclI AACGTT 1 cut(s) 256
AclWI GGATC 4 cut(s) 30, 611, 1338, 1351
AcoI YGGCCR 4 cut(s) 292, 1227, 1275, 1460
AcsI RAATTY 3 cut(s) 142, 729, 773
AcyI GRCGYC 1 cut(s) 963
AfaI GTAC 5 cut(s) 43, 75, 597, 670, 997
AfiI CCNNNNNNNGG 2 cut(s) 555, 1406
AflII CTTAAG 1 cut(s) 424
AluBI AGCT 3 cut(s) 1291, 1377, 1496
AluI AGCT 3 cut(s) 1291, 1377, 1496
Alw21I GWGCWC 1 cut(s) 1131
Alw26I GTCTC 1 cut(s) 580
Alw44I GTGCAC 1 cut(s) 1127
AlwI GGATC 4 cut(s) 30, 611, 1338, 1351
Ama87I CYCGRG 1 cut(s) 579
AoxI GGCC 4 cut(s) 292, 1227, 1275, 1460
ApaLI GTGCAC 1 cut(s) 1127
ApeKI GCWGC 1 cut(s) 1320
ApoI RAATTY 3 cut(s) 142, 729, 773
ArsI GACNNNNNNTTYG 2 cut(s) 1061, 1093
AseI ATTAAT 1 cut(s) 693
Asp700I GAANNNNTTC 1 cut(s) 947
AspLEI GCGC 1 cut(s) 503
AspS9I GGNCC 1 cut(s) 987
AsuHPI GGTGA 4 cut(s) 387, 818, 1028, 1478
AsuII TTCGAA 1 cut(s) 1253
AvaI CYCGRG 1 cut(s) 579
AvaII GGWCC 1 cut(s) 987
BaeGI GKGCMC 1 cut(s) 1131
BalI TGGCCA 2 cut(s) 1277, 1462
BamHI GGATCC 1 cut(s) 1343
Bbv12I GWGCWC 1 cut(s) 1131
BbvI GCAGC 1 cut(s) 1307
BccI CCATC 2 cut(s) 1226, 1498
BcgI CGANNNNNNTGC 4 cut(s) 198, 232, 1139, 1173
BclI TGATCA 2 cut(s) 348, 954
BcoDI GTCTC 1 cut(s) 580
BfaI CTAG 2 cut(s) 414, 999
BfmI CTRYAG 1 cut(s) 709
BfrI CTTAAG 1 cut(s) 424
BglII AGATCT 1 cut(s) 786
BisI GCNGC 3 cut(s) 295, 1227, 1321
BlsI GCNGC 3 cut(s) 296, 1228, 1322
BmcAI AGTACT 2 cut(s) 670, 997
Bme18I GGWCC 1 cut(s) 987
BmeT110I CYCGRG 1 cut(s) 579
BmgT120I GGNCC 1 cut(s) 987
BmiI GGNNCC 3 cut(s) 279, 1135, 1345
BmrI ACTGGG 1 cut(s) 46
BmsI GCATC 3 cut(s) 134, 664, 1267
BmuI ACTGGG 1 cut(s) 46
BplI GAGNNNNNCTC 2 cut(s) 776, 808
Bpu14I TTCGAA 1 cut(s) 1253
BpuEI CTTGAG 1 cut(s) 386
Bsa29I ATCGAT 1 cut(s) 861
BsaAI YACGTR 1 cut(s) 1330
BsaHI GRCGYC 1 cut(s) 963
BsaJI CCNNGG 1 cut(s) 1454
BsaWI WCCGGW 2 cut(s) 1013, 1136
BsaXI ACNNNNNCTCC 2 cut(s) 294, 324
Bsc4I CCNNNNNNNGG 2 cut(s) 555, 1406
Bse1I ACTGG 7 cut(s) 39, 52, 84, 461, 599, 990, 1469
BseCI ATCGAT 1 cut(s) 861
BseDI CCNNGG 1 cut(s) 1454
BseGI GGATG 1 cut(s) 423
BseLI CCNNNNNNNGG 2 cut(s) 555, 1406
BseNI ACTGG 7 cut(s) 39, 52, 84, 461, 599, 990, 1469
BseSI GKGCMC 1 cut(s) 1131
BseX3I CGGCCG 1 cut(s) 1227
BseXI GCAGC 1 cut(s) 1307
Bsh1285I CGRYCG 1 cut(s) 1230
BshFI GGCC 4 cut(s) 294, 1229, 1277, 1462
BshVI ATCGAT 1 cut(s) 861
BsiEI CGRYCG 1 cut(s) 1230
BsiHKAI GWGCWC 1 cut(s) 1131
BsiHKCI CYCGRG 1 cut(s) 579
BsiSI CCGG 2 cut(s) 1014, 1137
BslFI GGGAC 1 cut(s) 46
BslI CCNNNNNNNGG 2 cut(s) 555, 1406
BsmAI GTCTC 1 cut(s) 580
BsmFI GGGAC 1 cut(s) 46
BsmI GAATGC 3 cut(s) 264, 380, 1181
BsnI GGCC 4 cut(s) 294, 1229, 1277, 1462
BsoBI CYCGRG 1 cut(s) 579
Bsp119I TTCGAA 1 cut(s) 1253
Bsp1286I GDGCHC 1 cut(s) 1131
Bsp19I CCATGG 1 cut(s) 1454
BspACI CCGC 2 cut(s) 295, 1226
BspANI GGCC 4 cut(s) 294, 1229, 1277, 1462
BspDI ATCGAT 1 cut(s) 861
BspHI TCATGA 2 cut(s) 432, 951
BspLI GGNNCC 3 cut(s) 279, 1135, 1345
BspPI GGATC 4 cut(s) 30, 611, 1338, 1351
BspQI GCTCTTC 1 cut(s) 570
BspT104I TTCGAA 1 cut(s) 1253
BspTI CTTAAG 1 cut(s) 424
BsrI ACTGG 7 cut(s) 39, 52, 84, 461, 599, 990, 1469
BssECI CCNNGG 1 cut(s) 1454
BssNI GRCGYC 1 cut(s) 963
BssT1I CCWWGG 1 cut(s) 1454
Bst4CI ACNGT 1 cut(s) 1106
Bst6I CTCTTC 2 cut(s) 570, 639
BstACI GRCGYC 1 cut(s) 963
BstAFI CTTAAG 1 cut(s) 424
BstBAI YACGTR 1 cut(s) 1330
BstBI TTCGAA 1 cut(s) 1253
BstDSI CCRYGG 1 cut(s) 1454
BstF5I GGATG 1 cut(s) 423
BstHHI GCGC 1 cut(s) 503
BstMAI GTCTC 1 cut(s) 580
BstMCI CGRYCG 1 cut(s) 1230
BstMWI GCNNNNNNNGC 1 cut(s) 1235
BstNSI RCATGY 1 cut(s) 1399
BstSFI CTRYAG 1 cut(s) 709
BstSLI GKGCMC 1 cut(s) 1131
BstSNI TACGTA 1 cut(s) 1330
BstV1I GCAGC 1 cut(s) 1307
BstX2I RGATCY 3 cut(s) 35, 786, 1343
BstXI CCANNNNNNTGG 1 cut(s) 1285
BstYI RGATCY 3 cut(s) 35, 786, 1343
BstZI CGGCCG 1 cut(s) 1227
Bsu15I ATCGAT 1 cut(s) 861
BsuRI GGCC 4 cut(s) 294, 1229, 1277, 1462
BsuTUI ATCGAT 1 cut(s) 861
BtgI CCRYGG 1 cut(s) 1454
BtsCI GGATG 1 cut(s) 423
BtsIMutI CAGTG 1 cut(s) 77
CciI TCATGA 2 cut(s) 432, 951
CfoI GCGC 1 cut(s) 503
Cfr13I GGNCC 1 cut(s) 987
ClaI ATCGAT 1 cut(s) 861
CseI GACGC 1 cut(s) 1079
Csp6I GTAC 5 cut(s) 42, 74, 596, 669, 996
CviAII CATG 7 cut(s) 271, 433, 718, 952, 1115, 1396, 1455
CviQI GTAC 5 cut(s) 42, 74, 596, 669, 996
DraI TTTAAA 2 cut(s) 450, 847
EaeI YGGCCR 4 cut(s) 292, 1227, 1275, 1460
EagI CGGCCG 1 cut(s) 1227
Eam1104I CTCTTC 2 cut(s) 570, 639
EarI CTCTTC 2 cut(s) 570, 639
EclXI CGGCCG 1 cut(s) 1227
Eco105I TACGTA 1 cut(s) 1330
Eco130I CCWWGG 1 cut(s) 1454
Eco32I GATATC 1 cut(s) 859
Eco47I GGWCC 1 cut(s) 987
Eco52I CGGCCG 1 cut(s) 1227
Eco88I CYCGRG 1 cut(s) 579
EcoRI GAATTC 1 cut(s) 729
EcoRV GATATC 1 cut(s) 859
EcoT14I CCWWGG 1 cut(s) 1454
ErhI CCWWGG 1 cut(s) 1454
FaeI CATG 7 cut(s) 274, 436, 721, 955, 1118, 1399, 1458
FalI AAGNNNNNCTT 2 cut(s) 747, 779
FaqI GGGAC 1 cut(s) 46
FatI CATG 7 cut(s) 270, 432, 717, 951, 1114, 1395, 1454
FauNDI CATATG 1 cut(s) 611
FbaI TGATCA 2 cut(s) 348, 954
FblI GTMKAC 1 cut(s) 208
Fnu4HI GCNGC 3 cut(s) 295, 1227, 1321
FokI GGATG 1 cut(s) 430
Fsp4HI GCNGC 3 cut(s) 295, 1227, 1321
FspBI CTAG 2 cut(s) 414, 999
FspI TGCGCA 1 cut(s) 502
GlaI GCGC 1 cut(s) 502
GluI GCNGC 3 cut(s) 295, 1227, 1321
HaeIII GGCC 4 cut(s) 294, 1229, 1277, 1462
HapII CCGG 2 cut(s) 1014, 1137
HgaI GACGC 1 cut(s) 1079
HhaI GCGC 1 cut(s) 503
Hin1I GRCGYC 1 cut(s) 963
Hin1II CATG 7 cut(s) 274, 436, 721, 955, 1118, 1399, 1458
Hin6I GCGC 1 cut(s) 501
HinP1I GCGC 1 cut(s) 501
HincII GTYRAC 2 cut(s) 196, 209
HindII GTYRAC 2 cut(s) 196, 209
HindIII AAGCTT 1 cut(s) 1375
HinfI GANTC 7 cut(s) 83, 309, 429, 606, 818, 863, 1335
HpaII CCGG 2 cut(s) 1014, 1137
HphI GGTGA 4 cut(s) 387, 818, 1028, 1478
Hpy166II GTNNAC 5 cut(s) 196, 209, 706, 874, 1129
Hpy188I TCNGA 3 cut(s) 277, 933, 1218
Hpy188III TCNNGA 5 cut(s) 433, 579, 799, 952, 985
Hpy8I GTNNAC 5 cut(s) 196, 209, 706, 874, 1129
Hpy99I CGWCG 1 cut(s) 965
HpyAV CCTTC 2 cut(s) 1310, 1376
HpyCH4III ACNGT 1 cut(s) 1106
HpyCH4IV ACGT 8 cut(s) 256, 520, 594, 702, 963, 1119, 1167, 1329
HpyCH4V TGCA 7 cut(s) 240, 252, 655, 717, 1129, 1150, 1181
HpyF10VI GCNNNNNNNGC 1 cut(s) 1235
HpySE526I ACGT 8 cut(s) 256, 520, 594, 702, 963, 1119, 1167, 1329
Hsp92I GRCGYC 1 cut(s) 963
Hsp92II CATG 7 cut(s) 274, 436, 721, 955, 1118, 1399, 1458
HspAI GCGC 1 cut(s) 501
Ksp22I TGATCA 2 cut(s) 348, 954
LguI GCTCTTC 1 cut(s) 570
LmnI GCTCC 3 cut(s) 261, 1235, 1288
Lsp1109I GCAGC 1 cut(s) 1307
LweI GCATC 3 cut(s) 134, 664, 1267
MaeI CTAG 2 cut(s) 414, 999
MaeII ACGT 8 cut(s) 256, 520, 594, 702, 963, 1119, 1167, 1329
MaeIII GTNAC 5 cut(s) 590, 964, 1007, 1046, 1421
MboII GAAGA 8 cut(s) 557, 656, 725, 767, 781, 1217, 1220, 1426
MflI RGATCY 3 cut(s) 35, 786, 1343
MhlI GDGCHC 1 cut(s) 1131
MlsI TGGCCA 2 cut(s) 1277, 1462
MluCI AATT 9 cut(s) 142, 330, 628, 729, 773, 822, 1075, 1221, 1244
MluNI TGGCCA 2 cut(s) 1277, 1462
MlyI GAGTC 5 cut(s) 77, 303, 423, 827, 1329
MmeI TCCRAC 3 cut(s) 239, 255, 583
MnlI CCTC 9 cut(s) 399, 408, 452, 471, 640, 1035, 1106, 1133, 1494
Mox20I TGGCCA 2 cut(s) 1277, 1462
MroXI GAANNNNTTC 1 cut(s) 947
MscI TGGCCA 2 cut(s) 1277, 1462
MseI TTAA 8 cut(s) 425, 449, 693, 699, 846, 1065, 1196, 1442
MslI CAYNNNNRTG 2 cut(s) 269, 722
Msp20I TGGCCA 2 cut(s) 1277, 1462
MspCI CTTAAG 1 cut(s) 424
MspI CCGG 2 cut(s) 1014, 1137
Mva1269I GAATGC 3 cut(s) 264, 380, 1181
MwoI GCNNNNNNNGC 1 cut(s) 1235
NcoI CCATGG 1 cut(s) 1454
NdeI CATATG 1 cut(s) 611
NlaIII CATG 7 cut(s) 274, 436, 721, 955, 1118, 1399, 1458
NlaIV GGNNCC 3 cut(s) 279, 1135, 1345
NmuCI GTSAC 2 cut(s) 590, 964
NsbI TGCGCA 1 cut(s) 502
NspI RCATGY 1 cut(s) 1399
NspV TTCGAA 1 cut(s) 1253
PaeR7I CTCGAG 1 cut(s) 579
PagI TCATGA 2 cut(s) 432, 951
PciSI GCTCTTC 1 cut(s) 570
PcsI WCGNNNNNNNCGW 1 cut(s) 586
PctI GAATGC 3 cut(s) 264, 380, 1181
PdmI GAANNNNTTC 1 cut(s) 947
PfeI GAWTC 2 cut(s) 606, 863
PflMI CCANNNNNTGG 1 cut(s) 555
PkrI GCNGC 3 cut(s) 296, 1228, 1322
PleI GAGTC 5 cut(s) 77, 303, 423, 826, 1329
PpsI GAGTC 5 cut(s) 77, 303, 423, 826, 1329
Ppu21I YACGTR 1 cut(s) 1330
PshBI ATTAAT 1 cut(s) 693
PsiI TTATAA 2 cut(s) 924, 1361
Psp1406I AACGTT 1 cut(s) 256
PspN4I GGNNCC 3 cut(s) 279, 1135, 1345
PspPI GGNCC 1 cut(s) 987
PsuI RGATCY 3 cut(s) 35, 786, 1343
RsaI GTAC 5 cut(s) 43, 75, 597, 670, 997
RsaNI GTAC 5 cut(s) 42, 74, 596, 669, 996
RseI CAYNNNNRTG 2 cut(s) 269, 722
SalI GTCGAC 1 cut(s) 207
SapI GCTCTTC 1 cut(s) 570
SaqAI TTAA 8 cut(s) 425, 449, 693, 699, 846, 1065, 1196, 1442
SatI GCNGC 3 cut(s) 295, 1227, 1321
Sau96I GGNCC 1 cut(s) 987
ScaI AGTACT 2 cut(s) 670, 997
SchI GAGTC 5 cut(s) 77, 303, 423, 827, 1329
SduI GDGCHC 1 cut(s) 1131
SfaNI GCATC 3 cut(s) 134, 664, 1267
SfcI CTRYAG 1 cut(s) 709
Sfr274I CTCGAG 1 cut(s) 579
SfuI TTCGAA 1 cut(s) 1253
SinI GGWCC 1 cut(s) 987
SlaI CTCGAG 1 cut(s) 579
SmiMI CAYNNNNRTG 2 cut(s) 269, 722
SmlI CTYRAG 3 cut(s) 401, 424, 579
SmoI CTYRAG 3 cut(s) 401, 424, 579
SnaBI TACGTA 1 cut(s) 1330
Sse9I AATT 9 cut(s) 142, 330, 628, 729, 773, 822, 1075, 1221, 1244
SsiI CCGC 2 cut(s) 295, 1226
SspI AATATT 3 cut(s) 697, 1031, 1417
SspMI CTAG 2 cut(s) 414, 999
StyI CCWWGG 1 cut(s) 1454
TaaI ACNGT 1 cut(s) 1106
TaiI ACGT 8 cut(s) 259, 523, 597, 705, 966, 1122, 1170, 1332
TaqI TCGA 8 cut(s) 208, 307, 580, 798, 861, 905, 1253, 1411
TasI AATT 9 cut(s) 142, 330, 628, 729, 773, 822, 1075, 1221, 1244
TatI WGTACW 3 cut(s) 41, 668, 995
TauI GCSGC 2 cut(s) 297, 1229
TfiI GAWTC 2 cut(s) 606, 863
Tru1I TTAA 8 cut(s) 425, 449, 693, 699, 846, 1065, 1196, 1442
Tru9I TTAA 8 cut(s) 425, 449, 693, 699, 846, 1065, 1196, 1442
TscAI CASTG 1 cut(s) 84
TseFI GTSAC 2 cut(s) 590, 964
TseI GCWGC 1 cut(s) 1320
Tsp45I GTSAC 2 cut(s) 590, 964
TspGWI ACGGA 4 cut(s) 204, 578, 1146, 1356
TspRI CASTG 1 cut(s) 84
Van91I CCANNNNNTGG 1 cut(s) 555
Vha464I CTTAAG 1 cut(s) 424
VneI GTGCAC 1 cut(s) 1127
VpaK11BI GGWCC 1 cut(s) 987
VspI ATTAAT 1 cut(s) 693
XapI RAATTY 3 cut(s) 142, 729, 773
XceI RCATGY 1 cut(s) 1399
XhoI CTCGAG 1 cut(s) 579
XmiI GTMKAC 1 cut(s) 208
XmnI GAANNNNTTC 1 cut(s) 947
XspI CTAG 2 cut(s) 414, 999
ZraI GACGTC 1 cut(s) 964
ZrmI AGTACT 2 cut(s) 670, 997
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.