Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7A

Orthogroup ID

OG0006952

Physical Location & Seq

Genomic Coordinates Forward (+)

30723116 .. 30731763

Gene Structure 8648 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7AG286300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1281 bp

ATGGGAAACGTCAAGGGTCCTGTCCGGGAGGGCGACATCCTCACCCTTCTCGAGTCCGATAGAGAAGCAGAAAGAATACGAAATGATTATAATCAAGAACATCCAACACCACTACGTACTCTGATAAACCAAAAAGGGCAAAGTTGGCATTCATCCTCCAAGGTGCTTGAAAAACCGGTGAGCTTTCACTCTTTGGAAAAAGAGCTGGTAGTCGTAGCTACGTATAATGACCTAATTTTGTGCTGCGCGACCAAGTATTTTCAACGTGATTACTTCATCTTTAATCCATACACCATGCAGTGGGTTGCTCTTCCTCCTCCTACTCTAGTTCTCCATCACGTACCGGTTGGAATCATCTGCGATGTGCCCTTCTATAATTATGAGAAAGAGAAACACAACAATTATATGCAGCACCTAGTTAATATCTACGATAATTATAGGTGTAAGGTTGTAAGATTTCTTCCTTATGGTGAGACAATACACCAAGCACACTGGTTTTTGATGGAGAATTCGTTCAAGTTCAAGGTGGAGATCTTTTCTTTTGAGACTGGTGAATGGAGAGAGTCAGTTATATCGTCCCCACGAAAATTCATTTTTGATGAAATCAATTCCGATATTAACTTTGCGTACAATGGAATGCTATATTGGCCGAGTAGGTCAAGTGATGCTAACTTCCTTATTGGGTTGAATCCATTCATGATCAACAACGACACTGACAACAACAGAACTCGTGCTAGTAACTTCGCCGGTGATGGTGATGGTTGCTATAGATGTCGTTTTATTGAACTAGTAGTCCCAATTGACAAAGAAATAACTTCTCGTAAGTATCATATTCAATGTTTAGATGTGCGAGAAGGGTGTCTGCATATGTGCGGCTTTGACTCAATTGATAAATTTATAATGATTTGGGAGTTGAAAGAAGATGATAATCTGACCCTCGCAACCGATGGAGTTGAAATTTTGTGTGCGAAGTATGCCGCAGATGATTATTCAATGGAATTTTCGAATAATGTGAACGTAATAGCTATAGAGCCAATTGCTTTTGACCCAAATGATGAGGATATATTGTCCCTAAGACTAAGACTCGAGTACCTCAACGATGATGGAGATGGAGAGGGAGTCCAGGATGTTGATATCGATGCCAACCTTAGTACAGGAAACTTGACCTACTACTCGCCGATGATGGCTGAAAAGAGCTTCTACCCACTAACTGTGCCATTGTGGCCGACACCAGTTCCTCGACTACCACACCAATTTGCTGCTTCTGCCTTGTCTAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box

Protein Analysis

426

Amino Acids

49.24

Weight (kDa)

4.93

Isoelectric Point (pI)

35.28

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_S28e	PF01200	3 - 26	4.5e-09	Ribosomal protein S28e
b-prop_At3g26010-like	PF24750	65 - 316	1.2e-07	F-box protein At3g26010-like, beta-propeller

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006952)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g31431
rosa_chinensis	RchiOBHm_Chr1g0380481
rosa_laevigata	RLG00000001340 RLG00000002701 RLG00000026293 RLG00000026297
rosa_multiflora	Rmu_sc0000945.1_g000007 Rmu_sc0001733.1_g000007 Rmu_sc0006267.1_g000004
rosa_roxburghii	Rroxscaffold_3G00228330 Rroxscaffold_3G00228570 Rroxscaffold_3G00244720 Rroxscaffold_4G00279310 Rroxscaffold_4G00279330
rosa_rugosa	Rorug07G0270400
rosa_samantha	Rh1CG415600 Rh1DG431400 Rh7AG286300 Rh7AG425300 Rh7AG425800 Rh7DG289700 Rh7DG416900 Rh7DG417100
rosa_wichuraiana	Rw7G035160 Rw7G035250 Rw7G035290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	90, 899
AccB7I	CCANNNNNTGG	1 cut(s)	300
AccII	CGCG	1 cut(s)	248
AciI	CCGC	2 cut(s)	873, 978
AcoI	YGGCCR	2 cut(s)	647, 1223
AcsI	RAATTY	5 cut(s)	508, 587, 893, 957, 998
AfaI	GTAC	5 cut(s)	118, 342, 629, 1091, 1153
AfiI	CCNNNNNNNGG	1 cut(s)	300
AgeI	ACCGGT	2 cut(s)	175, 343
AhlI	ACTAGT	1 cut(s)	787
AjnI	CCWGG	1 cut(s)	1122
AjuI	GAANNNNNNNTTGG	2 cut(s)	628, 660
AloI	GAACNNNNNNTCC	4 cut(s)	497, 529, 777, 809
AluBI	AGCT	5 cut(s)	183, 205, 218, 1025, 1197
AluI	AGCT	5 cut(s)	183, 205, 218, 1025, 1197
Alw26I	GTCTC	2 cut(s)	467, 539
Ama87I	CYCGRG	2 cut(s)	50, 1085
AoxI	GGCC	2 cut(s)	647, 1223
ApeKI	GCWGC	3 cut(s)	243, 409, 1259
ApoI	RAATTY	5 cut(s)	508, 587, 893, 957, 998
AsiGI	ACCGGT	2 cut(s)	175, 343
Asp700I	GAANNNNTTC	2 cut(s)	512, 692
AspLEI	GCGC	1 cut(s)	248
AspS9I	GGNCC	1 cut(s)	17
AsuC2I	CCSGG	1 cut(s)	26
AsuHPI	GGTGA	6 cut(s)	34, 190, 482, 563, 761, 767
AsuII	TTCGAA	1 cut(s)	1004
AvaI	CYCGRG	2 cut(s)	50, 1085
AvaII	GGWCC	1 cut(s)	17
BaeGI	GKGCMC	1 cut(s)	369
BaeI	ACNNNNGTAYC	2 cut(s)	1073, 1106
BarI	GAAGNNNNNNTAC	2 cut(s)	444, 476
BauI	CACGAG	1 cut(s)	729
BbvI	GCAGC	3 cut(s)	230, 421, 1246
BccI	CCATC	8 cut(s)	342, 496, 746, 752, 941, 1097, 1103, 1177
BciT130I	CCWGG	1 cut(s)	1124
BclI	TGATCA	1 cut(s)	699
BcnI	CCSGG	1 cut(s)	26
BcoDI	GTCTC	2 cut(s)	467, 539
BcuI	ACTAGT	1 cut(s)	787
BfaI	CTAG	4 cut(s)	326, 416, 735, 788
BfmI	CTRYAG	2 cut(s)	766, 1026
BglI	GCCNNNNNGGC	1 cut(s)	1222
BglII	AGATCT	1 cut(s)	531
BisI	GCNGC	5 cut(s)	244, 410, 874, 978, 1260
BlsI	GCNGC	5 cut(s)	245, 411, 875, 979, 1261
Bme1390I	CCNGG	2 cut(s)	26, 1124
Bme18I	GGWCC	1 cut(s)	17
BmeT110I	CYCGRG	2 cut(s)	50, 1085
BmgT120I	GGNCC	1 cut(s)	17
BmiI	GGNNCC	1 cut(s)	18
BmrFI	CCNGG	2 cut(s)	26, 1124
BmsI	GCATC	2 cut(s)	655, 1129
Bpu14I	TTCGAA	1 cut(s)	1004
BpuMI	CCSGG	1 cut(s)	26
Bsa29I	ATCGAT	1 cut(s)	1137
BsaAI	YACGTR	3 cut(s)	116, 222, 340
BsaBI	GATNNNNATC	2 cut(s)	90, 927
BsaJI	CCNNGG	1 cut(s)	159
BsaWI	WCCGGW	2 cut(s)	175, 343
BsaXI	ACNNNNNCTCC	4 cut(s)	497, 527, 1104, 1134
Bsc4I	CCNNNNNNNGG	1 cut(s)	300
Bse118I	RCCGGY	3 cut(s)	175, 343, 746
Bse1I	ACTGG	3 cut(s)	497, 553, 1232
Bse8I	GATNNNNATC	2 cut(s)	90, 927
BseBI	CCWGG	1 cut(s)	1124
BseCI	ATCGAT	1 cut(s)	1137
BseDI	CCNNGG	1 cut(s)	159
BseGI	GGATG	4 cut(s)	36, 100, 152, 1132
BseJI	GATNNNNATC	2 cut(s)	90, 927
BseLI	CCNNNNNNNGG	1 cut(s)	300
BseNI	ACTGG	3 cut(s)	497, 553, 1232
BseRI	GAGGAG	1 cut(s)	306
BseSI	GKGCMC	1 cut(s)	369
BseXI	GCAGC	3 cut(s)	230, 421, 1246
Bsh1236I	CGCG	1 cut(s)	248
BshFI	GGCC	2 cut(s)	649, 1225
BshTI	ACCGGT	2 cut(s)	175, 343
BshVI	ATCGAT	1 cut(s)	1137
BsiHKCI	CYCGRG	2 cut(s)	50, 1085
BsiSI	CCGG	4 cut(s)	25, 176, 344, 747
BslFI	GGGAC	3 cut(s)	562, 779, 1054
BslI	CCNNNNNNNGG	1 cut(s)	300
BsmAI	GTCTC	2 cut(s)	467, 539
BsmFI	GGGAC	3 cut(s)	562, 779, 1054
BsmI	GAATGC	2 cut(s)	148, 642
BsnI	GGCC	2 cut(s)	649, 1225
BsoBI	CYCGRG	2 cut(s)	50, 1085
Bsp119I	TTCGAA	1 cut(s)	1004
Bsp1286I	GDGCHC	1 cut(s)	369
Bsp143I	GATC	2 cut(s)	531, 699
BspACI	CCGC	2 cut(s)	873, 978
BspANI	GGCC	2 cut(s)	649, 1225
BspDI	ATCGAT	1 cut(s)	1137
BspFNI	CGCG	1 cut(s)	248
BspHI	TCATGA	1 cut(s)	696
BspLI	GGNNCC	1 cut(s)	18
BspQI	GCTCTTC	1 cut(s)	315
BspT104I	TTCGAA	1 cut(s)	1004
BsrFI	RCCGGY	3 cut(s)	175, 343, 746
BsrI	ACTGG	3 cut(s)	497, 553, 1232
BssAI	RCCGGY	3 cut(s)	175, 343, 746
BssECI	CCNNGG	1 cut(s)	159
BssMI	GATC	2 cut(s)	531, 699
BssSI	CACGAG	1 cut(s)	729
BssT1I	CCWWGG	1 cut(s)	159
Bst2BI	CACGAG	1 cut(s)	729
Bst2UI	CCWGG	1 cut(s)	1124
Bst4CI	ACNGT	1 cut(s)	1213
Bst6I	CTCTTC	1 cut(s)	315
BstBAI	YACGTR	3 cut(s)	116, 222, 340
BstBI	TTCGAA	1 cut(s)	1004
BstDEI	CTNAG	4 cut(s)	1073, 1079, 1148, 1275
BstF5I	GGATG	4 cut(s)	36, 100, 152, 1132
BstFNI	CGCG	1 cut(s)	248
BstHHI	GCGC	1 cut(s)	248
BstKTI	GATC	2 cut(s)	534, 702
BstMAI	GTCTC	2 cut(s)	467, 539
BstMBI	GATC	2 cut(s)	531, 699
BstMWI	GCNNNNNNNGC	5 cut(s)	145, 646, 974, 1222, 1265
BstNI	CCWGG	1 cut(s)	1124
BstSCI	CCNGG	2 cut(s)	24, 1122
BstSFI	CTRYAG	2 cut(s)	766, 1026
BstSLI	GKGCMC	1 cut(s)	369
BstSNI	TACGTA	2 cut(s)	116, 222
BstUI	CGCG	1 cut(s)	248
BstV1I	GCAGC	3 cut(s)	230, 421, 1246
BstX2I	RGATCY	1 cut(s)	531
BstYI	RGATCY	1 cut(s)	531
Bsu15I	ATCGAT	1 cut(s)	1137
BsuRI	GGCC	2 cut(s)	649, 1225
BsuTUI	ATCGAT	1 cut(s)	1137
BtgZI	GCGATG	1 cut(s)	375
BtsCI	GGATG	4 cut(s)	36, 100, 152, 1132
BtsI	GCAGTG	1 cut(s)	305
BtsIMutI	CAGTG	3 cut(s)	305, 490, 711
CciI	TCATGA	1 cut(s)	696
CfoI	GCGC	1 cut(s)	248
Cfr10I	RCCGGY	3 cut(s)	175, 343, 746
Cfr13I	GGNCC	1 cut(s)	17
ClaI	ATCGAT	1 cut(s)	1137
Csp6I	GTAC	5 cut(s)	117, 341, 628, 1090, 1152
CspAI	ACCGGT	2 cut(s)	175, 343
CviAII	CATG	2 cut(s)	295, 697
CviQI	GTAC	5 cut(s)	117, 341, 628, 1090, 1152
DdeI	CTNAG	4 cut(s)	1073, 1079, 1148, 1275
DpnI	GATC	2 cut(s)	533, 701
DpnII	GATC	2 cut(s)	531, 699
EaeI	YGGCCR	2 cut(s)	647, 1223
Eam1104I	CTCTTC	1 cut(s)	315
EarI	CTCTTC	1 cut(s)	315
Eco105I	TACGTA	2 cut(s)	116, 222
Eco130I	CCWWGG	1 cut(s)	159
Eco32I	GATATC	1 cut(s)	1135
Eco47I	GGWCC	1 cut(s)	17
Eco88I	CYCGRG	2 cut(s)	50, 1085
EcoO109I	RGGNCCY	1 cut(s)	17
EcoRI	GAATTC	1 cut(s)	508
EcoRII	CCWGG	1 cut(s)	1122
EcoRV	GATATC	1 cut(s)	1135
EcoT14I	CCWWGG	1 cut(s)	159
ErhI	CCWWGG	1 cut(s)	159
FaeI	CATG	2 cut(s)	298, 700
FaqI	GGGAC	3 cut(s)	562, 779, 1054
FatI	CATG	2 cut(s)	294, 696
FauNDI	CATATG	1 cut(s)	867
FbaI	TGATCA	1 cut(s)	699
Fnu4HI	GCNGC	5 cut(s)	244, 410, 874, 978, 1260
FokI	GGATG	4 cut(s)	23, 87, 139, 1139
Fsp4HI	GCNGC	5 cut(s)	244, 410, 874, 978, 1260
FspBI	CTAG	4 cut(s)	326, 416, 735, 788
GlaI	GCGC	1 cut(s)	247
GluI	GCNGC	5 cut(s)	244, 410, 874, 978, 1260
HaeIII	GGCC	2 cut(s)	649, 1225
HapII	CCGG	4 cut(s)	25, 176, 344, 747
HhaI	GCGC	1 cut(s)	248
Hin1II	CATG	2 cut(s)	298, 700
Hin6I	GCGC	1 cut(s)	246
HinP1I	GCGC	1 cut(s)	246
HinfI	GANTC	7 cut(s)	53, 351, 563, 688, 881, 1083, 1119
HpaII	CCGG	4 cut(s)	25, 176, 344, 747
HphI	GGTGA	6 cut(s)	34, 190, 482, 563, 761, 767
Hpy166II	GTNNAC	1 cut(s)	1015
Hpy188I	TCNGA	4 cut(s)	58, 123, 613, 933
Hpy188III	TCNNGA	3 cut(s)	50, 95, 697
Hpy8I	GTNNAC	1 cut(s)	1015
HpyAV	CCTTC	3 cut(s)	56, 379, 848
HpyCH4III	ACNGT	1 cut(s)	1213
HpyCH4IV	ACGT	6 cut(s)	9, 115, 221, 265, 339, 1017
HpyCH4V	TGCA	3 cut(s)	298, 409, 865
HpyF10VI	GCNNNNNNNGC	5 cut(s)	145, 646, 974, 1222, 1265
HpyF3I	CTNAG	4 cut(s)	1073, 1079, 1148, 1275
HpySE526I	ACGT	6 cut(s)	9, 115, 221, 265, 339, 1017
Hsp92II	CATG	2 cut(s)	298, 700
HspAI	GCGC	1 cut(s)	246
Ksp22I	TGATCA	1 cut(s)	699
Kzo9I	GATC	2 cut(s)	531, 699
LguI	GCTCTTC	1 cut(s)	315
Lsp1109I	GCAGC	3 cut(s)	230, 421, 1246
LweI	GCATC	2 cut(s)	655, 1129
MaeI	CTAG	4 cut(s)	326, 416, 735, 788
MaeII	ACGT	6 cut(s)	9, 115, 221, 265, 339, 1017
MaeIII	GTNAC	1 cut(s)	737
MalI	GATC	2 cut(s)	533, 701
MboI	GATC	2 cut(s)	531, 699
MboII	GAAGA	3 cut(s)	302, 452, 932
MfeI	CAATTG	3 cut(s)	798, 885, 1035
MflI	RGATCY	1 cut(s)	531
MhlI	GDGCHC	1 cut(s)	369
MlyI	GAGTC	5 cut(s)	62, 572, 875, 1077, 1128
MmeI	TCCRAC	2 cut(s)	128, 328
MroXI	GAANNNNTTC	2 cut(s)	512, 692
MseI	TTAA	3 cut(s)	282, 420, 618
MspI	CCGG	4 cut(s)	25, 176, 344, 747
MspR9I	CCNGG	2 cut(s)	26, 1124
MunI	CAATTG	3 cut(s)	798, 885, 1035
Mva1269I	GAATGC	2 cut(s)	148, 642
MvaI	CCWGG	1 cut(s)	1124
MvnI	CGCG	1 cut(s)	248
MwoI	GCNNNNNNNGC	5 cut(s)	145, 646, 974, 1222, 1265
NciI	CCSGG	1 cut(s)	26
NdeI	CATATG	1 cut(s)	867
NdeII	GATC	2 cut(s)	531, 699
NlaIII	CATG	2 cut(s)	298, 700
NlaIV	GGNNCC	1 cut(s)	18
NmeAIII	GCCGAG	1 cut(s)	675
NspV	TTCGAA	1 cut(s)	1004
PaeR7I	CTCGAG	2 cut(s)	50, 1085
PagI	TCATGA	1 cut(s)	696
PciSI	GCTCTTC	1 cut(s)	315
PctI	GAATGC	2 cut(s)	148, 642
PdmI	GAANNNNTTC	2 cut(s)	512, 692
PfeI	GAWTC	2 cut(s)	351, 688
PflMI	CCANNNNNTGG	1 cut(s)	300
PfoI	TCCNGGA	2 cut(s)	24, 1122
PinAI	ACCGGT	2 cut(s)	175, 343
PkrI	GCNGC	5 cut(s)	245, 411, 875, 979, 1261
PleI	GAGTC	5 cut(s)	61, 571, 875, 1077, 1127
PpsI	GAGTC	5 cut(s)	61, 571, 875, 1077, 1127
Ppu21I	YACGTR	3 cut(s)	116, 222, 340
PpuMI	RGGWCCY	1 cut(s)	17
PsiI	TTATAA	2 cut(s)	90, 899
Psp5II	RGGWCCY	1 cut(s)	17
Psp6I	CCWGG	1 cut(s)	1122
PspGI	CCWGG	1 cut(s)	1122
PspN4I	GGNNCC	1 cut(s)	18
PspPI	GGNCC	1 cut(s)	17
PspPPI	RGGWCCY	1 cut(s)	17
PspXI	VCTCGAGB	1 cut(s)	1085
PsuI	RGATCY	1 cut(s)	531
RsaI	GTAC	5 cut(s)	118, 342, 629, 1091, 1153
RsaNI	GTAC	5 cut(s)	117, 341, 628, 1090, 1152
SapI	GCTCTTC	1 cut(s)	315
SaqAI	TTAA	3 cut(s)	282, 420, 618
SatI	GCNGC	5 cut(s)	244, 410, 874, 978, 1260
Sau3AI	GATC	2 cut(s)	531, 699
Sau96I	GGNCC	1 cut(s)	17
SchI	GAGTC	5 cut(s)	62, 572, 875, 1077, 1128
ScrFI	CCNGG	2 cut(s)	26, 1124
SduI	GDGCHC	1 cut(s)	369
SfaNI	GCATC	2 cut(s)	655, 1129
SfcI	CTRYAG	2 cut(s)	766, 1026
Sfr274I	CTCGAG	2 cut(s)	50, 1085
SfuI	TTCGAA	1 cut(s)	1004
SgrAI	CRCCGGYG	1 cut(s)	746
SinI	GGWCC	1 cut(s)	17
SlaI	CTCGAG	2 cut(s)	50, 1085
SmlI	CTYRAG	2 cut(s)	50, 1085
SmoI	CTYRAG	2 cut(s)	50, 1085
SnaBI	TACGTA	2 cut(s)	116, 222
SpeI	ACTAGT	1 cut(s)	787
SsiI	CCGC	2 cut(s)	873, 978
SspMI	CTAG	4 cut(s)	326, 416, 735, 788
StyD4I	CCNGG	2 cut(s)	24, 1122
StyI	CCWWGG	1 cut(s)	159
TaaI	ACNGT	1 cut(s)	1213
TaiI	ACGT	6 cut(s)	12, 118, 224, 268, 342, 1020
TaqI	TCGA	5 cut(s)	51, 1004, 1086, 1137, 1240
TatI	WGTACW	1 cut(s)	1151
TauI	GCSGC	2 cut(s)	876, 980
TfiI	GAWTC	2 cut(s)	351, 688
Tru1I	TTAA	3 cut(s)	282, 420, 618
Tru9I	TTAA	3 cut(s)	282, 420, 618
TscAI	CASTG	3 cut(s)	305, 497, 718
TseI	GCWGC	3 cut(s)	243, 409, 1259
TspDTI	ATGAA	5 cut(s)	141, 265, 580, 615, 685
TspRI	CASTG	3 cut(s)	305, 497, 718
Van91I	CCANNNNNTGG	1 cut(s)	300
VpaK11BI	GGWCC	1 cut(s)	17
XapI	RAATTY	5 cut(s)	508, 587, 893, 957, 998
XhoI	CTCGAG	2 cut(s)	50, 1085
XmnI	GAANNNNTTC	2 cut(s)	512, 692
XspI	CTAG	4 cut(s)	326, 416, 735, 788

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.