Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000945.1

Orthogroup ID

OG0006952

Physical Location & Seq

Genomic Coordinates Forward (+)

26946 .. 28295

Gene Structure 1350 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000945.1_g000007.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1350 bp

atgaataacactattgatgatctccctgatgttgtattggttgacattctctgtcgacttccgtgctttgattttgtgttcaaatgcaagtctgtgtgcaaacgttggagcattctcatgtcggacccatacttcattggccgctttctacttcgactccaaagccgacatacgccaattccaccacttactctgatcaatcaaaagggggagaacttccctatggcattcaatcctctttcaccactcaagtttctaactaggatgttcttgagactcatgagttccctctctttgaaaaaagagccagttgtagtaggggcgtgtaatgacttggttttgtgtttcgcaagtgagtattttcaacgtgattacttcatctgtaatccatataccacccaatgggttgctcttcctcctgtctctcgagttctccgtgacgtaccagttggattcatatgtgatccctactataattatcataagaaagaagaggaagtgcatcaaacaaaaagtactatcatacaagataagttgattaatattaacgtggactataggtgcatggtagtgagaattcttccttatgatgacacatttgaagatgaactttcctacaaattcaaagtggagatcttctctttcgagattggtgaatggagagagtcaattatctcattcccacaaagatttaaacttgatgatatcgattccaatgttcactttgcttacaatgaaatgctgtattattggtcgagtatgtggggagattataactttctgattgggttgaacccgttcatgatcagcgacgtcactaataacaacatcatcaggaccagtagtactagcaatagtaactccggtgataatcctcaatattaccctaaatgtcgttacattgaactcatagttaaagacgctaattatgatgagttatcttacctccataactgtcaaatacatgacgtagttgtgcacggaaccggagggtatctgcaaatatgtcttttagacgttgaacattctgcattcatttgggagttaacaaaagaagaagatgatctgataattgcggccgatggagcaggaaaattgtattcgaagcatcttttactgcctttggccaaagaaatggagctgattggtttagacccatataatgaaggctgcttatacgtaagactcaacggatccctttttgatcttataaaccttcgtagaagcttgttatacgagatgaacatgcctaaaaggagtcgaaatattagtaactattgcttcttcccattaaaagcgaaaccatggtggccaacaccagttcccagactacctcacccatcagcttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box

Protein Analysis

449

Amino Acids

52.42

Weight (kDa)

5.74

Isoelectric Point (pI)

43.05

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006952)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g31431
rosa_chinensis	RchiOBHm_Chr1g0380481
rosa_laevigata	RLG00000001340 RLG00000002701 RLG00000026293 RLG00000026297
rosa_multiflora	Rmu_sc0000945.1_g000007 Rmu_sc0001733.1_g000007 Rmu_sc0006267.1_g000004
rosa_roxburghii	Rroxscaffold_3G00228330 Rroxscaffold_3G00228570 Rroxscaffold_3G00244720 Rroxscaffold_4G00279310 Rroxscaffold_4G00279330
rosa_rugosa	Rorug07G0270400
rosa_samantha	Rh1CG415600 Rh1DG431400 Rh7AG286300 Rh7AG425300 Rh7AG425800 Rh7DG289700 Rh7DG416900 Rh7DG417100
rosa_wichuraiana	Rw7G035160 Rw7G035250 Rw7G035290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	774, 1211
AatII	GACGTC	1 cut(s)	816
AccB7I	CCANNNNNTGG	1 cut(s)	402
AccI	GTMKAC	1 cut(s)	55
AciI	CCGC	2 cut(s)	142, 1076
AclI	AACGTT	1 cut(s)	103
AclWI	GGATC	3 cut(s)	458, 1188, 1201
AcoI	YGGCCR	4 cut(s)	139, 1077, 1125, 1310
AcsI	RAATTY	2 cut(s)	576, 620
AcyI	GRCGYC	1 cut(s)	813
AfaI	GTAC	3 cut(s)	444, 517, 847
AfiI	CCNNNNNNNGG	1 cut(s)	402
AgsI	TTSAA	9 cut(s)	82, 232, 298, 365, 602, 625, 793, 905, 1022
AluBI	AGCT	3 cut(s)	1141, 1227, 1346
AluI	AGCT	3 cut(s)	1141, 1227, 1346
Alw21I	GWGCWC	1 cut(s)	981
Alw26I	GTCTC	2 cut(s)	268, 427
Alw44I	GTGCAC	1 cut(s)	977
AlwI	GGATC	3 cut(s)	458, 1188, 1201
Ama87I	CYCGRG	1 cut(s)	426
AoxI	GGCC	4 cut(s)	139, 1077, 1125, 1310
ApaLI	GTGCAC	1 cut(s)	977
ApeKI	GCWGC	1 cut(s)	1170
ApoI	RAATTY	2 cut(s)	576, 620
AseI	ATTAAT	1 cut(s)	540
Asp700I	GAANNNNTTC	1 cut(s)	797
AspS9I	GGNCC	2 cut(s)	124, 837
AsuHPI	GGTGA	4 cut(s)	234, 665, 878, 1328
AsuII	TTCGAA	1 cut(s)	1103
AvaI	CYCGRG	1 cut(s)	426
AvaII	GGWCC	2 cut(s)	124, 837
BaeGI	GKGCMC	1 cut(s)	981
BalI	TGGCCA	2 cut(s)	1127, 1312
BamHI	GGATCC	1 cut(s)	1193
Bbv12I	GWGCWC	1 cut(s)	981
BbvI	GCAGC	1 cut(s)	1157
BccI	CCATC	2 cut(s)	1076, 1348
BcgI	CGANNNNNNTGC	2 cut(s)	45, 79
BclI	TGATCA	2 cut(s)	195, 804
BcoDI	GTCTC	2 cut(s)	268, 427
BfaI	CTAG	2 cut(s)	261, 849
BfmI	CTRYAG	1 cut(s)	556
BglII	AGATCT	1 cut(s)	633
BisI	GCNGC	3 cut(s)	142, 1077, 1171
BlsI	GCNGC	3 cut(s)	143, 1078, 1172
BmcAI	AGTACT	2 cut(s)	517, 847
Bme18I	GGWCC	2 cut(s)	124, 837
BmeT110I	CYCGRG	1 cut(s)	426
BmgT120I	GGNCC	2 cut(s)	124, 837
BmiI	GGNNCC	3 cut(s)	126, 985, 1195
BmsI	GCATC	2 cut(s)	511, 1117
BplI	GAGNNNNNCTC	2 cut(s)	623, 655
Bpu14I	TTCGAA	1 cut(s)	1103
BpuEI	CTTGAG	2 cut(s)	233, 292
Bsa29I	ATCGAT	1 cut(s)	708
BsaAI	YACGTR	1 cut(s)	1180
BsaHI	GRCGYC	1 cut(s)	813
BsaJI	CCNNGG	1 cut(s)	1304
BsaWI	WCCGGW	2 cut(s)	863, 986
BsaXI	ACNNNNNCTCC	2 cut(s)	141, 171
Bsc4I	CCNNNNNNNGG	1 cut(s)	402
Bse1I	ACTGG	4 cut(s)	308, 446, 840, 1319
BseCI	ATCGAT	1 cut(s)	708
BseDI	CCNNGG	1 cut(s)	1304
BseGI	GGATG	1 cut(s)	270
BseLI	CCNNNNNNNGG	1 cut(s)	402
BseNI	ACTGG	4 cut(s)	308, 446, 840, 1319
BseSI	GKGCMC	1 cut(s)	981
BseX3I	CGGCCG	1 cut(s)	1077
BseXI	GCAGC	1 cut(s)	1157
Bsh1285I	CGRYCG	1 cut(s)	1080
BshFI	GGCC	4 cut(s)	141, 1079, 1127, 1312
BshVI	ATCGAT	1 cut(s)	708
BsiEI	CGRYCG	1 cut(s)	1080
BsiHKAI	GWGCWC	1 cut(s)	981
BsiHKCI	CYCGRG	1 cut(s)	426
BsiSI	CCGG	2 cut(s)	864, 987
BslI	CCNNNNNNNGG	1 cut(s)	402
BsmAI	GTCTC	2 cut(s)	268, 427
BsmI	GAATGC	3 cut(s)	111, 227, 1031
BsnI	GGCC	4 cut(s)	141, 1079, 1127, 1312
BsoBI	CYCGRG	1 cut(s)	426
Bsp119I	TTCGAA	1 cut(s)	1103
Bsp1286I	GDGCHC	1 cut(s)	981
Bsp143I	GATC	8 cut(s)	19, 195, 463, 633, 804, 1063, 1193, 1204
Bsp19I	CCATGG	1 cut(s)	1304
BspACI	CCGC	2 cut(s)	142, 1076
BspANI	GGCC	4 cut(s)	141, 1079, 1127, 1312
BspDI	ATCGAT	1 cut(s)	708
BspHI	TCATGA	2 cut(s)	279, 801
BspLI	GGNNCC	3 cut(s)	126, 985, 1195
BspPI	GGATC	3 cut(s)	458, 1188, 1201
BspQI	GCTCTTC	1 cut(s)	417
BspT104I	TTCGAA	1 cut(s)	1103
BsrI	ACTGG	4 cut(s)	308, 446, 840, 1319
BssECI	CCNNGG	1 cut(s)	1304
BssMI	GATC	8 cut(s)	19, 195, 463, 633, 804, 1063, 1193, 1204
BssNI	GRCGYC	1 cut(s)	813
BssT1I	CCWWGG	1 cut(s)	1304
Bst4CI	ACNGT	1 cut(s)	956
Bst6I	CTCTTC	2 cut(s)	417, 486
BstACI	GRCGYC	1 cut(s)	813
BstBAI	YACGTR	1 cut(s)	1180
BstBI	TTCGAA	1 cut(s)	1103
BstDSI	CCRYGG	1 cut(s)	1304
BstF5I	GGATG	1 cut(s)	270
BstKTI	GATC	8 cut(s)	22, 198, 466, 636, 807, 1066, 1196, 1207
BstMAI	GTCTC	2 cut(s)	268, 427
BstMBI	GATC	8 cut(s)	19, 195, 463, 633, 804, 1063, 1193, 1204
BstMCI	CGRYCG	1 cut(s)	1080
BstMWI	GCNNNNNNNGC	1 cut(s)	1085
BstNSI	RCATGY	1 cut(s)	1249
BstSFI	CTRYAG	1 cut(s)	556
BstSLI	GKGCMC	1 cut(s)	981
BstSNI	TACGTA	1 cut(s)	1180
BstV1I	GCAGC	1 cut(s)	1157
BstX2I	RGATCY	2 cut(s)	633, 1193
BstXI	CCANNNNNNTGG	1 cut(s)	1135
BstYI	RGATCY	2 cut(s)	633, 1193
BstZI	CGGCCG	1 cut(s)	1077
Bsu15I	ATCGAT	1 cut(s)	708
BsuRI	GGCC	4 cut(s)	141, 1079, 1127, 1312
BsuTUI	ATCGAT	1 cut(s)	708
BtgI	CCRYGG	1 cut(s)	1304
BtsCI	GGATG	1 cut(s)	270
CciI	TCATGA	2 cut(s)	279, 801
Cfr13I	GGNCC	2 cut(s)	124, 837
ClaI	ATCGAT	1 cut(s)	708
CseI	GACGC	1 cut(s)	929
Csp6I	GTAC	3 cut(s)	443, 516, 846
CviAII	CATG	7 cut(s)	118, 280, 565, 802, 965, 1246, 1305
CviQI	GTAC	3 cut(s)	443, 516, 846
DpnI	GATC	8 cut(s)	21, 197, 465, 635, 806, 1065, 1195, 1206
DpnII	GATC	8 cut(s)	19, 195, 463, 633, 804, 1063, 1193, 1204
DraI	TTTAAA	1 cut(s)	694
EaeI	YGGCCR	4 cut(s)	139, 1077, 1125, 1310
EagI	CGGCCG	1 cut(s)	1077
Eam1104I	CTCTTC	2 cut(s)	417, 486
EarI	CTCTTC	2 cut(s)	417, 486
EclXI	CGGCCG	1 cut(s)	1077
Eco105I	TACGTA	1 cut(s)	1180
Eco130I	CCWWGG	1 cut(s)	1304
Eco32I	GATATC	1 cut(s)	706
Eco47I	GGWCC	2 cut(s)	124, 837
Eco52I	CGGCCG	1 cut(s)	1077
Eco88I	CYCGRG	1 cut(s)	426
EcoRI	GAATTC	1 cut(s)	576
EcoRV	GATATC	1 cut(s)	706
EcoT14I	CCWWGG	1 cut(s)	1304
ErhI	CCWWGG	1 cut(s)	1304
FaeI	CATG	7 cut(s)	121, 283, 568, 805, 968, 1249, 1308
FalI	AAGNNNNNCTT	2 cut(s)	594, 626
FatI	CATG	7 cut(s)	117, 279, 564, 801, 964, 1245, 1304
FauNDI	CATATG	1 cut(s)	458
FbaI	TGATCA	2 cut(s)	195, 804
FblI	GTMKAC	1 cut(s)	55
Fnu4HI	GCNGC	3 cut(s)	142, 1077, 1171
FokI	GGATG	1 cut(s)	277
Fsp4HI	GCNGC	3 cut(s)	142, 1077, 1171
FspBI	CTAG	2 cut(s)	261, 849
GluI	GCNGC	3 cut(s)	142, 1077, 1171
HaeIII	GGCC	4 cut(s)	141, 1079, 1127, 1312
HapII	CCGG	2 cut(s)	864, 987
HgaI	GACGC	1 cut(s)	929
Hin1I	GRCGYC	1 cut(s)	813
Hin1II	CATG	7 cut(s)	121, 283, 568, 805, 968, 1249, 1308
HincII	GTYRAC	3 cut(s)	43, 56, 1047
HindII	GTYRAC	3 cut(s)	43, 56, 1047
HindIII	AAGCTT	1 cut(s)	1225
HinfI	GANTC	7 cut(s)	156, 276, 453, 665, 710, 1185, 1258
HpaI	GTTAAC	1 cut(s)	1047
HpaII	CCGG	2 cut(s)	864, 987
HphI	GGTGA	4 cut(s)	234, 665, 878, 1328
Hpy166II	GTNNAC	6 cut(s)	43, 56, 553, 721, 979, 1047
Hpy188I	TCNGA	4 cut(s)	124, 195, 783, 1068
Hpy188III	TCNNGA	6 cut(s)	271, 280, 426, 646, 802, 835
Hpy8I	GTNNAC	6 cut(s)	43, 56, 553, 721, 979, 1047
Hpy99I	CGWCG	1 cut(s)	815
HpyAV	CCTTC	2 cut(s)	1160, 1226
HpyCH4III	ACNGT	1 cut(s)	956
HpyCH4IV	ACGT	8 cut(s)	103, 367, 441, 549, 813, 969, 1017, 1179
HpyCH4V	TGCA	7 cut(s)	87, 99, 502, 564, 979, 1000, 1031
HpyF10VI	GCNNNNNNNGC	1 cut(s)	1085
HpySE526I	ACGT	8 cut(s)	103, 367, 441, 549, 813, 969, 1017, 1179
Hsp92I	GRCGYC	1 cut(s)	813
Hsp92II	CATG	7 cut(s)	121, 283, 568, 805, 968, 1249, 1308
Ksp22I	TGATCA	2 cut(s)	195, 804
KspAI	GTTAAC	1 cut(s)	1047
Kzo9I	GATC	8 cut(s)	19, 195, 463, 633, 804, 1063, 1193, 1204
LguI	GCTCTTC	1 cut(s)	417
LmnI	GCTCC	3 cut(s)	108, 1085, 1138
Lsp1109I	GCAGC	1 cut(s)	1157
LweI	GCATC	2 cut(s)	511, 1117
MaeI	CTAG	2 cut(s)	261, 849
MaeII	ACGT	8 cut(s)	103, 367, 441, 549, 813, 969, 1017, 1179
MaeIII	GTNAC	5 cut(s)	437, 814, 857, 896, 1271
MalI	GATC	8 cut(s)	21, 197, 465, 635, 806, 1065, 1195, 1206
MboI	GATC	8 cut(s)	19, 195, 463, 633, 804, 1063, 1193, 1204
MboII	GAAGA	8 cut(s)	404, 503, 572, 614, 628, 1067, 1070, 1276
MflI	RGATCY	2 cut(s)	633, 1193
MhlI	GDGCHC	1 cut(s)	981
MlsI	TGGCCA	2 cut(s)	1127, 1312
MluCI	AATT	8 cut(s)	177, 475, 576, 620, 669, 925, 1071, 1094
MluNI	TGGCCA	2 cut(s)	1127, 1312
MlyI	GAGTC	5 cut(s)	150, 270, 674, 1179, 1267
MmeI	TCCRAC	3 cut(s)	86, 102, 430
MnlI	CCTC	8 cut(s)	246, 299, 426, 487, 885, 956, 983, 1344
Mox20I	TGGCCA	2 cut(s)	1127, 1312
MroXI	GAANNNNTTC	1 cut(s)	797
MscI	TGGCCA	2 cut(s)	1127, 1312
MseI	TTAA	6 cut(s)	540, 546, 693, 915, 1046, 1292
MslI	CAYNNNNRTG	2 cut(s)	116, 569
Msp20I	TGGCCA	2 cut(s)	1127, 1312
MspI	CCGG	2 cut(s)	864, 987
Mva1269I	GAATGC	3 cut(s)	111, 227, 1031
MwoI	GCNNNNNNNGC	1 cut(s)	1085
NcoI	CCATGG	1 cut(s)	1304
NdeI	CATATG	1 cut(s)	458
NdeII	GATC	8 cut(s)	19, 195, 463, 633, 804, 1063, 1193, 1204
NlaIII	CATG	7 cut(s)	121, 283, 568, 805, 968, 1249, 1308
NlaIV	GGNNCC	3 cut(s)	126, 985, 1195
NmuCI	GTSAC	2 cut(s)	437, 814
NspI	RCATGY	1 cut(s)	1249
NspV	TTCGAA	1 cut(s)	1103
PaeR7I	CTCGAG	1 cut(s)	426
PagI	TCATGA	2 cut(s)	279, 801
PciSI	GCTCTTC	1 cut(s)	417
PcsI	WCGNNNNNNNCGW	1 cut(s)	433
PctI	GAATGC	3 cut(s)	111, 227, 1031
PdmI	GAANNNNTTC	1 cut(s)	797
PfeI	GAWTC	2 cut(s)	453, 710
PflMI	CCANNNNNTGG	1 cut(s)	402
PkrI	GCNGC	3 cut(s)	143, 1078, 1172
PleI	GAGTC	5 cut(s)	150, 270, 673, 1179, 1266
PpsI	GAGTC	5 cut(s)	150, 270, 673, 1179, 1266
Ppu21I	YACGTR	1 cut(s)	1180
PshBI	ATTAAT	1 cut(s)	540
PsiI	TTATAA	2 cut(s)	774, 1211
Psp1406I	AACGTT	1 cut(s)	103
PspN4I	GGNNCC	3 cut(s)	126, 985, 1195
PspPI	GGNCC	2 cut(s)	124, 837
PsuI	RGATCY	2 cut(s)	633, 1193
RsaI	GTAC	3 cut(s)	444, 517, 847
RsaNI	GTAC	3 cut(s)	443, 516, 846
RseI	CAYNNNNRTG	2 cut(s)	116, 569
SalI	GTCGAC	1 cut(s)	54
SapI	GCTCTTC	1 cut(s)	417
SaqAI	TTAA	6 cut(s)	540, 546, 693, 915, 1046, 1292
SatI	GCNGC	3 cut(s)	142, 1077, 1171
Sau3AI	GATC	8 cut(s)	19, 195, 463, 633, 804, 1063, 1193, 1204
Sau96I	GGNCC	2 cut(s)	124, 837
ScaI	AGTACT	2 cut(s)	517, 847
SchI	GAGTC	5 cut(s)	150, 270, 674, 1179, 1267
SduI	GDGCHC	1 cut(s)	981
SfaNI	GCATC	2 cut(s)	511, 1117
SfcI	CTRYAG	1 cut(s)	556
Sfr274I	CTCGAG	1 cut(s)	426
SfuI	TTCGAA	1 cut(s)	1103
SinI	GGWCC	2 cut(s)	124, 837
SlaI	CTCGAG	1 cut(s)	426
SmiMI	CAYNNNNRTG	2 cut(s)	116, 569
SmlI	CTYRAG	3 cut(s)	248, 271, 426
SmoI	CTYRAG	3 cut(s)	248, 271, 426
SnaBI	TACGTA	1 cut(s)	1180
Sse9I	AATT	8 cut(s)	177, 475, 576, 620, 669, 925, 1071, 1094
SsiI	CCGC	2 cut(s)	142, 1076
SspI	AATATT	3 cut(s)	544, 881, 1267
SspMI	CTAG	2 cut(s)	261, 849
StyI	CCWWGG	1 cut(s)	1304
TaaI	ACNGT	1 cut(s)	956
TaiI	ACGT	8 cut(s)	106, 370, 444, 552, 816, 972, 1020, 1182
TaqI	TCGA	8 cut(s)	55, 154, 427, 645, 708, 755, 1103, 1261
TasI	AATT	8 cut(s)	177, 475, 576, 620, 669, 925, 1071, 1094
TatI	WGTACW	2 cut(s)	515, 845
TauI	GCSGC	2 cut(s)	144, 1079
TfiI	GAWTC	2 cut(s)	453, 710
Tru1I	TTAA	6 cut(s)	540, 546, 693, 915, 1046, 1292
Tru9I	TTAA	6 cut(s)	540, 546, 693, 915, 1046, 1292
TseFI	GTSAC	2 cut(s)	437, 814
TseI	GCWGC	1 cut(s)	1170
Tsp45I	GTSAC	2 cut(s)	437, 814
TspGWI	ACGGA	4 cut(s)	51, 425, 996, 1206
Van91I	CCANNNNNTGG	1 cut(s)	402
VneI	GTGCAC	1 cut(s)	977
VpaK11BI	GGWCC	2 cut(s)	124, 837
VspI	ATTAAT	1 cut(s)	540
XapI	RAATTY	2 cut(s)	576, 620
XceI	RCATGY	1 cut(s)	1249
XhoI	CTCGAG	1 cut(s)	426
XmiI	GTMKAC	1 cut(s)	55
XmnI	GAANNNNTTC	1 cut(s)	797
XspI	CTAG	2 cut(s)	261, 849
ZraI	GACGTC	1 cut(s)	814
ZrmI	AGTACT	2 cut(s)	517, 847

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.