Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0006952

Physical Location & Seq

Genomic Coordinates Reverse (-)

37540949 .. 37543717

Gene Structure 2769 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00244720.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1587 bp

ATGAACACACGTATTGATGATCTACCTGACGTTCTATTGATTGACATCCTTTCTAGACTTGCTTGCTATAAACTCGTTTCTCAATGCAAGTGTGTGTGCAAGCGTTGGTATAAGCTCATCATGTATGATAATTCTTTAATTGGCCTCTTTATATGCAGAATACGAAATGATCATAATCAAGAACATCCAACACCACTACGTACTCTGATAAACCAAAAAGGGCAAAGTTGGCATTCATCCTCCAAGGTGCTTGAAAAACCGATGAGCTTTCACTCTTTGGAAAAAGAGCTGGTAGTCGTAGCTACGTATAATGACCTAATTTTGTGCTGCGCGACCAAGTATTTTCAACGTGATTACTTCATCTGCAATCCATACACCATGCAGTGGGTTGCTCTTCCTCCTCCTACTCTAGTTCTCCATCACGTACCGGTTGGAATCATCTGCGATGTGCCCTTCTATAATTATGAGAAAGAGAAACACAACAATTATATGAAGCACCTAGTTAATATCTACGATAATTATAGGTGTAAGGTTGTAAGATTTCTTCCTTATGGTGAGACAATACACCAAGCGCACTGGTTTTTGATGGAGAATTCGTTCAAGTTCAAGGTGGAGATCTTTTCTTTTGAGACTGGTGAATGGAGAGAGTCAGTTATATCGTCCCCACGAAAATTCATTTTTGATGAAATCAATTCCAATATTAACTTTGCGTACAATGGAATGCTATATTGGCCGAGTAGGTCAAGTGATGCTAACTTCCTTATTGGGTTGAATCCTTTCATGATCAACAACGACGCTGACAACAACAGAACTCGTGCTAGTAACTTCGCCGGTGATGGTGATGGTTGCTATAGATGTCGTTTTATTGAACTAGTAGTCACAATTGACAAAGAAATAACTTCTCGTAAGTATCATATTCAATGTTTAGATGTGCGAGAAGGGTGTCTGCATATGTGCGGCTTTGACTCAATTGATAAATTTATAATGATTTGGGAGTTGAAAGAAGATGATAATCTGACCCTTGCAGCCGATGGAGTTGAAATTTTGTGTGCGAAGTATGCCGCAGATGATTATTCAATGGAATTTTCGAATTATGTGAACGTAATAGCCATAGAGCCAATTGCTTTTGACCCAAATGATGAGGATATATTGTACCTAAGACAAAGACACGAGTACCTCAACGATGATGGAGACGGAGAGGGAGTCGAGGATGTTGATATCGATGCCAACCTTAGTACAGGACACTTGACCTACTACTCGCCGATGATGGCTGAAAAGAGCTTCTACCCACTAACTGTGCCATTGTGGCCGACACCAGTTCCTCGACTACCACACCAATTTGCTGCTTCTTTTGCTTCAACAAGGAATGAAACAAATAATAGTAAATTCAGAAACCCTGAAGCTAAAGCATTAAAGAAGGTGGAGGATAAGACCAAAGTTGCCAGGGCATTAAAGGAAAGTGTTCTCCATCAAATAAGTGAGGCAAAGCCATTGGCTTTGATCATTGATTGGAGTTCACTCCTGTCTAACAAAAACAAGAAGACTGTGATGTATTTCTTTGTATTTACAGCCGAGTCAACTGACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box

Protein Analysis

528

Amino Acids

61.28

Weight (kDa)

5.77

Isoelectric Point (pI)

38.2

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
F-box-like	PF12937	5 - 45	9.4e-08	F-box-like
b-prop_At3g26010-like	PF24750	93 - 391	9.4e-10	F-box protein At3g26010-like, beta-propeller

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006952)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g31431
rosa_chinensis	RchiOBHm_Chr1g0380481
rosa_laevigata	RLG00000001340 RLG00000002701 RLG00000026293 RLG00000026297
rosa_multiflora	Rmu_sc0000945.1_g000007 Rmu_sc0001733.1_g000007 Rmu_sc0006267.1_g000004
rosa_roxburghii	Rroxscaffold_3G00228330 Rroxscaffold_3G00228570 Rroxscaffold_3G00244720 Rroxscaffold_4G00279310 Rroxscaffold_4G00279330
rosa_rugosa	Rorug07G0270400
rosa_samantha	Rh1CG415600 Rh1DG431400 Rh7AG286300 Rh7AG425300 Rh7AG425800 Rh7DG289700 Rh7DG416900 Rh7DG417100
rosa_wichuraiana	Rw7G035160 Rw7G035250 Rw7G035290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	983
AccB7I	CCANNNNNTGG	1 cut(s)	384
AccII	CGCG	1 cut(s)	332
AciI	CCGC	2 cut(s)	957, 1062
AcoI	YGGCCR	2 cut(s)	731, 1307
AcsI	RAATTY	6 cut(s)	592, 671, 977, 1041, 1082, 1385
AcuI	CTGAAG	1 cut(s)	1419
AfaI	GTAC	6 cut(s)	202, 426, 713, 1154, 1175, 1237
AfiI	CCNNNNNNNGG	1 cut(s)	384
AflIII	ACRYGT	1 cut(s)	8
AgeI	ACCGGT	1 cut(s)	427
AhlI	ACTAGT	1 cut(s)	871
AjnI	CCWGG	1 cut(s)	1442
AjuI	GAANNNNNNNTTGG	2 cut(s)	712, 744
AloI	GAACNNNNNNTCC	2 cut(s)	581, 613
AluBI	AGCT	6 cut(s)	115, 267, 289, 302, 1281, 1403
AluI	AGCT	6 cut(s)	115, 267, 289, 302, 1281, 1403
Alw26I	GTCTC	3 cut(s)	551, 623, 1185
AoxI	GGCC	3 cut(s)	142, 731, 1307
ApeKI	GCWGC	3 cut(s)	327, 1025, 1343
ApoI	RAATTY	6 cut(s)	592, 671, 977, 1041, 1082, 1385
AsiGI	ACCGGT	1 cut(s)	427
Asp700I	GAANNNNTTC	3 cut(s)	596, 776, 1461
AspLEI	GCGC	2 cut(s)	332, 574
AsuHPI	GGTGA	4 cut(s)	566, 647, 845, 851
AsuII	TTCGAA	1 cut(s)	1088
BaeGI	GKGCMC	1 cut(s)	453
BaeI	ACNNNNGTAYC	2 cut(s)	1157, 1190
BarI	GAAGNNNNNNTAC	2 cut(s)	528, 560
BauI	CACGAG	2 cut(s)	813, 1169
BbsI	GAAGAC	1 cut(s)	1547
BbvI	GCAGC	3 cut(s)	314, 1037, 1330
BccI	CCATC	8 cut(s)	426, 580, 830, 836, 1025, 1181, 1261, 1476
BciT130I	CCWGG	1 cut(s)	1444
BclI	TGATCA	3 cut(s)	169, 783, 1500
BcoDI	GTCTC	3 cut(s)	551, 623, 1185
BcuI	ACTAGT	1 cut(s)	871
BfaI	CTAG	5 cut(s)	54, 410, 500, 819, 872
BfmI	CTRYAG	1 cut(s)	850
BglI	GCCNNNNNGGC	1 cut(s)	1306
BglII	AGATCT	1 cut(s)	615
BisI	GCNGC	5 cut(s)	328, 958, 1026, 1062, 1344
BlsI	GCNGC	5 cut(s)	329, 959, 1027, 1063, 1345
Bme1390I	CCNGG	1 cut(s)	1444
BmrFI	CCNGG	1 cut(s)	1444
BmsI	GCATC	2 cut(s)	739, 1213
BpiI	GAAGAC	1 cut(s)	1547
Bpu14I	TTCGAA	1 cut(s)	1088
Bsa29I	ATCGAT	1 cut(s)	1221
BsaAI	YACGTR	4 cut(s)	11, 200, 306, 424
BsaBI	GATNNNNATC	3 cut(s)	44, 174, 1011
BsaJI	CCNNGG	2 cut(s)	243, 1443
BsaWI	WCCGGW	1 cut(s)	427
BsaXI	ACNNNNNCTCC	4 cut(s)	581, 611, 1188, 1218
Bsc4I	CCNNNNNNNGG	1 cut(s)	384
Bse118I	RCCGGY	2 cut(s)	427, 830
Bse1I	ACTGG	3 cut(s)	581, 637, 1316
Bse8I	GATNNNNATC	3 cut(s)	44, 174, 1011
BseBI	CCWGG	1 cut(s)	1444
BseCI	ATCGAT	1 cut(s)	1221
BseDI	CCNNGG	2 cut(s)	243, 1443
BseGI	GGATG	4 cut(s)	45, 184, 236, 1216
BseJI	GATNNNNATC	3 cut(s)	44, 174, 1011
BseLI	CCNNNNNNNGG	1 cut(s)	384
BseNI	ACTGG	3 cut(s)	581, 637, 1316
BseRI	GAGGAG	1 cut(s)	390
BseSI	GKGCMC	1 cut(s)	453
BseXI	GCAGC	3 cut(s)	314, 1037, 1330
Bsh1236I	CGCG	1 cut(s)	332
BshFI	GGCC	3 cut(s)	144, 733, 1309
BshTI	ACCGGT	1 cut(s)	427
BshVI	ATCGAT	1 cut(s)	1221
BsiSI	CCGG	2 cut(s)	428, 831
BslFI	GGGAC	1 cut(s)	646
BslI	CCNNNNNNNGG	1 cut(s)	384
BsmAI	GTCTC	3 cut(s)	551, 623, 1185
BsmBI	CGTCTC	1 cut(s)	1185
BsmFI	GGGAC	1 cut(s)	646
BsmI	GAATGC	2 cut(s)	232, 726
BsnI	GGCC	3 cut(s)	144, 733, 1309
Bsp119I	TTCGAA	1 cut(s)	1088
Bsp1286I	GDGCHC	1 cut(s)	453
Bsp143I	GATC	5 cut(s)	19, 169, 615, 783, 1500
BspACI	CCGC	2 cut(s)	957, 1062
BspANI	GGCC	3 cut(s)	144, 733, 1309
BspDI	ATCGAT	1 cut(s)	1221
BspFNI	CGCG	1 cut(s)	332
BspHI	TCATGA	1 cut(s)	780
BspQI	GCTCTTC	1 cut(s)	399
BspT104I	TTCGAA	1 cut(s)	1088
BsrFI	RCCGGY	2 cut(s)	427, 830
BsrI	ACTGG	3 cut(s)	581, 637, 1316
BssAI	RCCGGY	2 cut(s)	427, 830
BssECI	CCNNGG	2 cut(s)	243, 1443
BssMI	GATC	5 cut(s)	19, 169, 615, 783, 1500
BssSI	CACGAG	2 cut(s)	813, 1169
BssT1I	CCWWGG	1 cut(s)	243
Bst2BI	CACGAG	2 cut(s)	813, 1169
Bst2UI	CCWGG	1 cut(s)	1444
Bst4CI	ACNGT	2 cut(s)	1297, 1546
Bst6I	CTCTTC	1 cut(s)	399
BstBAI	YACGTR	4 cut(s)	11, 200, 306, 424
BstBI	TTCGAA	1 cut(s)	1088
BstC8I	GCNNGC	2 cut(s)	64, 101
BstDEI	CTNAG	2 cut(s)	1157, 1232
BstF5I	GGATG	4 cut(s)	45, 184, 236, 1216
BstFNI	CGCG	1 cut(s)	332
BstHHI	GCGC	2 cut(s)	332, 574
BstKTI	GATC	5 cut(s)	22, 172, 618, 786, 1503
BstMAI	GTCTC	3 cut(s)	551, 623, 1185
BstMBI	GATC	5 cut(s)	19, 169, 615, 783, 1500
BstMWI	GCNNNNNNNGC	5 cut(s)	229, 730, 1058, 1306, 1352
BstNI	CCWGG	1 cut(s)	1444
BstSCI	CCNGG	1 cut(s)	1442
BstSFI	CTRYAG	1 cut(s)	850
BstSLI	GKGCMC	1 cut(s)	453
BstSNI	TACGTA	2 cut(s)	200, 306
BstUI	CGCG	1 cut(s)	332
BstV1I	GCAGC	3 cut(s)	314, 1037, 1330
BstV2I	GAAGAC	1 cut(s)	1547
BstX2I	RGATCY	1 cut(s)	615
BstYI	RGATCY	1 cut(s)	615
Bsu15I	ATCGAT	1 cut(s)	1221
BsuRI	GGCC	3 cut(s)	144, 733, 1309
BsuTUI	ATCGAT	1 cut(s)	1221
BtgZI	GCGATG	1 cut(s)	459
BtsCI	GGATG	4 cut(s)	45, 184, 236, 1216
BtsI	GCAGTG	1 cut(s)	389
BtsIMutI	CAGTG	2 cut(s)	389, 574
Cac8I	GCNNGC	2 cut(s)	64, 101
CciI	TCATGA	1 cut(s)	780
CfoI	GCGC	2 cut(s)	332, 574
Cfr10I	RCCGGY	2 cut(s)	427, 830
ClaI	ATCGAT	1 cut(s)	1221
CseI	GACGC	1 cut(s)	803
Csp6I	GTAC	6 cut(s)	201, 425, 712, 1153, 1174, 1236
CspAI	ACCGGT	1 cut(s)	427
CviAII	CATG	3 cut(s)	121, 379, 781
CviQI	GTAC	6 cut(s)	201, 425, 712, 1153, 1174, 1236
DdeI	CTNAG	2 cut(s)	1157, 1232
DpnI	GATC	5 cut(s)	21, 171, 617, 785, 1502
DpnII	GATC	5 cut(s)	19, 169, 615, 783, 1500
EaeI	YGGCCR	2 cut(s)	731, 1307
Eam1104I	CTCTTC	1 cut(s)	399
EarI	CTCTTC	1 cut(s)	399
Eco105I	TACGTA	2 cut(s)	200, 306
Eco130I	CCWWGG	1 cut(s)	243
Eco32I	GATATC	1 cut(s)	1219
Eco57I	CTGAAG	1 cut(s)	1419
EcoRI	GAATTC	1 cut(s)	592
EcoRII	CCWGG	1 cut(s)	1442
EcoRV	GATATC	1 cut(s)	1219
EcoT14I	CCWWGG	1 cut(s)	243
ErhI	CCWWGG	1 cut(s)	243
Esp3I	CGTCTC	1 cut(s)	1185
FaeI	CATG	3 cut(s)	124, 382, 784
FaqI	GGGAC	1 cut(s)	646
FatI	CATG	3 cut(s)	120, 378, 780
FauNDI	CATATG	1 cut(s)	951
FbaI	TGATCA	3 cut(s)	169, 783, 1500
Fnu4HI	GCNGC	5 cut(s)	328, 958, 1026, 1062, 1344
FokI	GGATG	4 cut(s)	32, 171, 223, 1223
Fsp4HI	GCNGC	5 cut(s)	328, 958, 1026, 1062, 1344
FspBI	CTAG	5 cut(s)	54, 410, 500, 819, 872
GlaI	GCGC	2 cut(s)	331, 573
GluI	GCNGC	5 cut(s)	328, 958, 1026, 1062, 1344
HaeIII	GGCC	3 cut(s)	144, 733, 1309
HapII	CCGG	2 cut(s)	428, 831
HgaI	GACGC	1 cut(s)	803
HhaI	GCGC	2 cut(s)	332, 574
Hin1II	CATG	3 cut(s)	124, 382, 784
Hin6I	GCGC	2 cut(s)	330, 572
HinP1I	GCGC	2 cut(s)	330, 572
HincII	GTYRAC	1 cut(s)	1578
HindII	GTYRAC	1 cut(s)	1578
HinfI	GANTC	6 cut(s)	435, 647, 772, 965, 1203, 1574
HpaII	CCGG	2 cut(s)	428, 831
HphI	GGTGA	4 cut(s)	566, 647, 845, 851
Hpy166II	GTNNAC	3 cut(s)	1099, 1517, 1578
Hpy188I	TCNGA	3 cut(s)	207, 1017, 1391
Hpy188III	TCNNGA	3 cut(s)	54, 179, 781
Hpy8I	GTNNAC	3 cut(s)	1099, 1517, 1578
Hpy99I	CGWCG	1 cut(s)	797
HpyAV	CCTTC	3 cut(s)	463, 932, 1411
HpyCH4III	ACNGT	2 cut(s)	1297, 1546
HpyCH4IV	ACGT	7 cut(s)	10, 30, 199, 305, 349, 423, 1101
HpyCH4V	TGCA	7 cut(s)	87, 99, 156, 366, 382, 949, 1025
HpyF10VI	GCNNNNNNNGC	5 cut(s)	229, 730, 1058, 1306, 1352
HpyF3I	CTNAG	2 cut(s)	1157, 1232
HpySE526I	ACGT	7 cut(s)	10, 30, 199, 305, 349, 423, 1101
Hsp92II	CATG	3 cut(s)	124, 382, 784
HspAI	GCGC	2 cut(s)	330, 572
Ksp22I	TGATCA	3 cut(s)	169, 783, 1500
Kzo9I	GATC	5 cut(s)	19, 169, 615, 783, 1500
LguI	GCTCTTC	1 cut(s)	399
Lsp1109I	GCAGC	3 cut(s)	314, 1037, 1330
LweI	GCATC	2 cut(s)	739, 1213
MaeI	CTAG	5 cut(s)	54, 410, 500, 819, 872
MaeII	ACGT	7 cut(s)	10, 30, 199, 305, 349, 423, 1101
MaeIII	GTNAC	2 cut(s)	821, 877
MalI	GATC	5 cut(s)	21, 171, 617, 785, 1502
MboI	GATC	5 cut(s)	19, 169, 615, 783, 1500
MboII	GAAGA	4 cut(s)	386, 536, 1016, 1552
MfeI	CAATTG	3 cut(s)	882, 969, 1119
MflI	RGATCY	1 cut(s)	615
MhlI	GDGCHC	1 cut(s)	453
MlyI	GAGTC	4 cut(s)	656, 959, 1212, 1583
MmeI	TCCRAC	2 cut(s)	212, 412
MroXI	GAANNNNTTC	3 cut(s)	596, 776, 1461
MseI	TTAA	5 cut(s)	137, 504, 702, 1412, 1451
MspI	CCGG	2 cut(s)	428, 831
MspR9I	CCNGG	1 cut(s)	1444
MunI	CAATTG	3 cut(s)	882, 969, 1119
Mva1269I	GAATGC	2 cut(s)	232, 726
MvaI	CCWGG	1 cut(s)	1444
MvnI	CGCG	1 cut(s)	332
MwoI	GCNNNNNNNGC	5 cut(s)	229, 730, 1058, 1306, 1352
NdeI	CATATG	1 cut(s)	951
NdeII	GATC	5 cut(s)	19, 169, 615, 783, 1500
NlaIII	CATG	3 cut(s)	124, 382, 784
NmeAIII	GCCGAG	1 cut(s)	759
NmuCI	GTSAC	1 cut(s)	877
NspV	TTCGAA	1 cut(s)	1088
PagI	TCATGA	1 cut(s)	780
PciSI	GCTCTTC	1 cut(s)	399
PctI	GAATGC	2 cut(s)	232, 726
PdmI	GAANNNNTTC	3 cut(s)	596, 776, 1461
PfeI	GAWTC	2 cut(s)	435, 772
PflMI	CCANNNNNTGG	1 cut(s)	384
PinAI	ACCGGT	1 cut(s)	427
PkrI	GCNGC	5 cut(s)	329, 959, 1027, 1063, 1345
PleI	GAGTC	4 cut(s)	655, 959, 1211, 1582
PpsI	GAGTC	4 cut(s)	655, 959, 1211, 1582
Ppu21I	YACGTR	4 cut(s)	11, 200, 306, 424
PsiI	TTATAA	1 cut(s)	983
Psp6I	CCWGG	1 cut(s)	1442
PspGI	CCWGG	1 cut(s)	1442
PsuI	RGATCY	1 cut(s)	615
RsaI	GTAC	6 cut(s)	202, 426, 713, 1154, 1175, 1237
RsaNI	GTAC	6 cut(s)	201, 425, 712, 1153, 1174, 1236
SapI	GCTCTTC	1 cut(s)	399
SaqAI	TTAA	5 cut(s)	137, 504, 702, 1412, 1451
SatI	GCNGC	5 cut(s)	328, 958, 1026, 1062, 1344
Sau3AI	GATC	5 cut(s)	19, 169, 615, 783, 1500
SchI	GAGTC	4 cut(s)	656, 959, 1212, 1583
ScrFI	CCNGG	1 cut(s)	1444
SduI	GDGCHC	1 cut(s)	453
SfaNI	GCATC	2 cut(s)	739, 1213
SfcI	CTRYAG	1 cut(s)	850
SfuI	TTCGAA	1 cut(s)	1088
SgrAI	CRCCGGYG	1 cut(s)	830
SnaBI	TACGTA	2 cut(s)	200, 306
SpeI	ACTAGT	1 cut(s)	871
SsiI	CCGC	2 cut(s)	957, 1062
SspI	AATATT	1 cut(s)	700
SspMI	CTAG	5 cut(s)	54, 410, 500, 819, 872
StyD4I	CCNGG	1 cut(s)	1442
StyI	CCWWGG	1 cut(s)	243
TaaI	ACNGT	2 cut(s)	1297, 1546
TaiI	ACGT	7 cut(s)	13, 33, 202, 308, 352, 426, 1104
TaqI	TCGA	4 cut(s)	1088, 1206, 1221, 1324
TatI	WGTACW	1 cut(s)	1235
TauI	GCSGC	2 cut(s)	960, 1064
TfiI	GAWTC	2 cut(s)	435, 772
Tru1I	TTAA	5 cut(s)	137, 504, 702, 1412, 1451
Tru9I	TTAA	5 cut(s)	137, 504, 702, 1412, 1451
TscAI	CASTG	2 cut(s)	389, 581
TseFI	GTSAC	1 cut(s)	877
TseI	GCWGC	3 cut(s)	327, 1025, 1343
Tsp45I	GTSAC	1 cut(s)	877
TspDTI	ATGAA	8 cut(s)	17, 225, 349, 506, 664, 699, 769, 1383
TspGWI	ACGGA	1 cut(s)	1209
TspRI	CASTG	2 cut(s)	389, 581
Van91I	CCANNNNNTGG	1 cut(s)	384
XapI	RAATTY	6 cut(s)	592, 671, 977, 1041, 1082, 1385
XbaI	TCTAGA	1 cut(s)	53
XmnI	GAANNNNTTC	3 cut(s)	596, 776, 1461
XspI	CTAG	5 cut(s)	54, 410, 500, 819, 872

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.