Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0006952

Physical Location & Seq

Genomic Coordinates Reverse (-)

2124471 .. 2125696

Gene Structure 1226 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00279310.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1044 bp

ATGTCCGACCTATACTTCAGTGGCCGCTATCTACTTCATCATAAGCAACCACCGCCACTTACTCTGATAAACAAAAGAGGAGAAACCTTCCCTATTAAATTGACTCCTTCATCTCCCAAGTTTCTATCTAGGCTTTTCAAAAGACTCATGAGTGTCATGTCCCTGACATGCGAGCCAGTCGTGGTAGGGGCGTCTAATGACAGAAAGAGTATAATCATCGATGATGGCAATGAGGAGCTAATTAGTATGAATAACTGGTATAGGTGCAAGGTTGTGAGAATCCTTCCTTATGACGACACATGTGGAGACGAACTTTCCTCCAAATTTAAGCTAGATGTCTACTCTTTTGAGACATGTGAATGGAGAGAGTCAATTATATCATTCCCACGAAGATTTCGTTTTGATAGAATCAACTCGGATATTCACTTTTCTCACAACGAAATGTTATATTGGTCCAGTATCTGGGGAGGCAGTAACTTTCTGATTGGGTTGGACCCATTCATGATCAACGACAATAACATCAATACCAATAATTCTAGCATTAGCTCCGGTGAAGATCATGCCTATCACTATGAAGGTCGTTTCATTGAATTAGTAGTTAAACACCCTGTTGATGATCTGTTAGACAATCCAGATGAACATAACTATCAGATACATGGCCTAGCCGTGCAGTCCGGAGGTGGAGGGTGTCTGCAAATGTGTGTCTTAGACTCTATTGACAACATCATATTGGTTTGGGAGTTGAAAGAAGAAAAAGATCTGATCATTGCGGGCGATGGGGCTGGAATATTGTGTTCGAGAGAAGAAGATATTTGGGTGAATACGGCGAAACAAGTGGAGCTGATAGGCTTCAACCCAGATATTGAGGGTTTCTTGTACGTAAGACTCGATGGAGTTGATGGAGCTGATGGAGCTTGCATTTTTGAGATCAACGTTCGTACTGGAGTGGCAAAAGAGGTGGACATGGGTGGAAAGAGTGTAATGAGTAACAATTGCTTCTTCCCAATAAAAGTGGATCCATGGTGGCCGACACCAGTTCCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box

Protein Analysis

347

Amino Acids

39.37

Weight (kDa)

4.88

Isoelectric Point (pI)

42.66

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006952)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g31431
rosa_chinensis	RchiOBHm_Chr1g0380481
rosa_laevigata	RLG00000001340 RLG00000002701 RLG00000026293 RLG00000026297
rosa_multiflora	Rmu_sc0000945.1_g000007 Rmu_sc0001733.1_g000007 Rmu_sc0006267.1_g000004
rosa_roxburghii	Rroxscaffold_3G00228330 Rroxscaffold_3G00228570 Rroxscaffold_3G00244720 Rroxscaffold_4G00279310 Rroxscaffold_4G00279330
rosa_rugosa	Rorug07G0270400
rosa_samantha	Rh1CG415600 Rh1DG431400 Rh7AG286300 Rh7AG425300 Rh7AG425800 Rh7DG289700 Rh7DG416900 Rh7DG417100
rosa_wichuraiana	Rw7G035160 Rw7G035250 Rw7G035290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	462
AccI	GTMKAC	1 cut(s)	339
AccIII	TCCGGA	1 cut(s)	674
AciI	CCGC	3 cut(s)	25, 53, 770
AclI	AACGTT	1 cut(s)	933
AclWI	GGATC	2 cut(s)	1010, 1023
AcoI	YGGCCR	2 cut(s)	22, 1025
AcsI	RAATTY	1 cut(s)	323
AcyI	GRCGYC	1 cut(s)	191
AfaI	GTAC	2 cut(s)	878, 940
AfiI	CCNNNNNNNGG	1 cut(s)	462
AflIII	ACRYGT	2 cut(s)	299, 353
AgsI	TTSAA	4 cut(s)	139, 590, 745, 853
AluBI	AGCT	6 cut(s)	238, 331, 546, 841, 905, 914
AluI	AGCT	6 cut(s)	238, 331, 546, 841, 905, 914
Alw26I	GTCTC	2 cut(s)	300, 344
AlwI	GGATC	2 cut(s)	1010, 1023
AlwNI	CAGNNNCTG	1 cut(s)	462
Aor13HI	TCCGGA	1 cut(s)	674
AoxI	GGCC	3 cut(s)	22, 658, 1025
ApoI	RAATTY	1 cut(s)	323
AspS9I	GGNCC	2 cut(s)	453, 493
AsuHPI	GGTGA	2 cut(s)	563, 829
AvaII	GGWCC	2 cut(s)	453, 493
BamHI	GGATCC	1 cut(s)	1015
BccI	CCATC	5 cut(s)	218, 770, 884, 893, 902
BceAI	ACGGC	2 cut(s)	650, 840
BclI	TGATCA	2 cut(s)	504, 762
BcoDI	GTCTC	2 cut(s)	300, 344
BfaI	CTAG	4 cut(s)	129, 332, 537, 662
BglII	AGATCT	1 cut(s)	757
BisI	GCNGC	1 cut(s)	25
BlsI	GCNGC	1 cut(s)	26
Bme18I	GGWCC	2 cut(s)	453, 493
BmgT120I	GGNCC	2 cut(s)	453, 493
BmiI	GGNNCC	2 cut(s)	495, 1017
BpmI	CTGGAG	1 cut(s)	963
Bsa29I	ATCGAT	1 cut(s)	219
BsaAI	YACGTR	1 cut(s)	880
BsaHI	GRCGYC	1 cut(s)	191
BsaJI	CCNNGG	1 cut(s)	1019
BsaWI	WCCGGW	2 cut(s)	548, 674
Bsc4I	CCNNNNNNNGG	1 cut(s)	462
Bse1I	ACTGG	5 cut(s)	176, 260, 456, 946, 1034
Bse3DI	GCAATG	2 cut(s)	235, 765
BseAI	TCCGGA	1 cut(s)	674
BseCI	ATCGAT	1 cut(s)	219
BseDI	CCNNGG	1 cut(s)	1019
BseLI	CCNNNNNNNGG	1 cut(s)	462
BseMI	GCAATG	2 cut(s)	235, 765
BseNI	ACTGG	5 cut(s)	176, 260, 456, 946, 1034
BseRI	GAGGAG	2 cut(s)	93, 248
BsgI	GTGCAG	1 cut(s)	689
BshFI	GGCC	3 cut(s)	24, 660, 1027
BshVI	ATCGAT	1 cut(s)	219
BsiSI	CCGG	2 cut(s)	549, 675
BslFI	GGGAC	1 cut(s)	145
BslI	CCNNNNNNNGG	1 cut(s)	462
BsmAI	GTCTC	2 cut(s)	300, 344
BsmBI	CGTCTC	1 cut(s)	300
BsmFI	GGGAC	1 cut(s)	145
BsnI	GGCC	3 cut(s)	24, 660, 1027
Bsp13I	TCCGGA	1 cut(s)	674
Bsp143I	GATC	7 cut(s)	504, 556, 616, 757, 762, 927, 1015
Bsp19I	CCATGG	1 cut(s)	1019
BspACI	CCGC	3 cut(s)	25, 53, 770
BspANI	GGCC	3 cut(s)	24, 660, 1027
BspDI	ATCGAT	1 cut(s)	219
BspEI	TCCGGA	1 cut(s)	674
BspHI	TCATGA	2 cut(s)	147, 501
BspLI	GGNNCC	2 cut(s)	495, 1017
BspPI	GGATC	2 cut(s)	1010, 1023
BsrDI	GCAATG	2 cut(s)	235, 765
BsrI	ACTGG	5 cut(s)	176, 260, 456, 946, 1034
BssECI	CCNNGG	1 cut(s)	1019
BssMI	GATC	7 cut(s)	504, 556, 616, 757, 762, 927, 1015
BssNI	GRCGYC	1 cut(s)	191
BssT1I	CCWWGG	1 cut(s)	1019
BstACI	GRCGYC	1 cut(s)	191
BstBAI	YACGTR	1 cut(s)	880
BstC8I	GCNNGC	3 cut(s)	173, 772, 916
BstDEI	CTNAG	1 cut(s)	706
BstDSI	CCRYGG	1 cut(s)	1019
BstKTI	GATC	7 cut(s)	507, 559, 619, 760, 765, 930, 1018
BstMAI	GTCTC	2 cut(s)	300, 344
BstMBI	GATC	7 cut(s)	504, 556, 616, 757, 762, 927, 1015
BstMWI	GCNNNNNNNGC	2 cut(s)	52, 911
BstNSI	RCATGY	3 cut(s)	171, 303, 357
BstSNI	TACGTA	1 cut(s)	880
BstX2I	RGATCY	2 cut(s)	757, 1015
BstYI	RGATCY	2 cut(s)	757, 1015
Bsu15I	ATCGAT	1 cut(s)	219
BsuRI	GGCC	3 cut(s)	24, 660, 1027
BsuTUI	ATCGAT	1 cut(s)	219
BtgI	CCRYGG	1 cut(s)	1019
BtgZI	GCGATG	1 cut(s)	789
BtsIMutI	CAGTG	1 cut(s)	25
Cac8I	GCNNGC	3 cut(s)	173, 772, 916
CaiI	CAGNNNCTG	1 cut(s)	462
CciI	TCATGA	2 cut(s)	147, 501
Cfr13I	GGNCC	2 cut(s)	453, 493
ClaI	ATCGAT	1 cut(s)	219
CseI	GACGC	1 cut(s)	180
Csp6I	GTAC	2 cut(s)	877, 939
CspCI	CAANNNNNGTGG	4 cut(s)	939, 974, 993, 1028
CviQI	GTAC	2 cut(s)	877, 939
DdeI	CTNAG	1 cut(s)	706
DpnI	GATC	7 cut(s)	506, 558, 618, 759, 764, 929, 1017
DpnII	GATC	7 cut(s)	504, 556, 616, 757, 762, 927, 1015
EaeI	YGGCCR	2 cut(s)	22, 1025
Eco105I	TACGTA	1 cut(s)	880
Eco130I	CCWWGG	1 cut(s)	1019
Eco47I	GGWCC	2 cut(s)	453, 493
EcoT14I	CCWWGG	1 cut(s)	1019
ErhI	CCWWGG	1 cut(s)	1019
Esp3I	CGTCTC	1 cut(s)	300
FaqI	GGGAC	1 cut(s)	145
FauI	CCCGC	1 cut(s)	763
FbaI	TGATCA	2 cut(s)	504, 762
FblI	GTMKAC	1 cut(s)	339
Fnu4HI	GCNGC	1 cut(s)	25
Fsp4HI	GCNGC	1 cut(s)	25
FspBI	CTAG	4 cut(s)	129, 332, 537, 662
GluI	GCNGC	1 cut(s)	25
GsuI	CTGGAG	1 cut(s)	963
HaeIII	GGCC	3 cut(s)	24, 660, 1027
HapII	CCGG	2 cut(s)	549, 675
HgaI	GACGC	1 cut(s)	180
Hin1I	GRCGYC	1 cut(s)	191
HinfI	GANTC	7 cut(s)	103, 144, 279, 368, 408, 710, 885
HpaII	CCGG	2 cut(s)	549, 675
HphI	GGTGA	2 cut(s)	563, 829
Hpy166II	GTNNAC	2 cut(s)	340, 961
Hpy188I	TCNGA	6 cut(s)	7, 66, 418, 483, 651, 762
Hpy188III	TCNNGA	5 cut(s)	148, 502, 632, 675, 798
Hpy8I	GTNNAC	2 cut(s)	340, 961
HpyAV	CCTTC	4 cut(s)	97, 117, 293, 569
HpyCH4IV	ACGT	2 cut(s)	879, 933
HpyCH4V	TGCA	4 cut(s)	267, 670, 694, 918
HpyF10VI	GCNNNNNNNGC	2 cut(s)	52, 911
HpyF3I	CTNAG	1 cut(s)	706
HpySE526I	ACGT	2 cut(s)	879, 933
Hsp92I	GRCGYC	1 cut(s)	191
Kpn2I	TCCGGA	1 cut(s)	674
Ksp22I	TGATCA	2 cut(s)	504, 762
Kzo9I	GATC	7 cut(s)	504, 556, 616, 757, 762, 927, 1015
LmnI	GCTCC	5 cut(s)	235, 551, 838, 902, 911
MaeI	CTAG	4 cut(s)	129, 332, 537, 662
MaeII	ACGT	2 cut(s)	879, 933
MaeIII	GTNAC	2 cut(s)	473, 986
MalI	GATC	7 cut(s)	506, 558, 618, 759, 764, 929, 1017
MboI	GATC	7 cut(s)	504, 556, 616, 757, 762, 927, 1015
MboII	GAAGA	6 cut(s)	402, 566, 761, 815, 818, 991
MfeI	CAATTG	1 cut(s)	991
MflI	RGATCY	2 cut(s)	757, 1015
MluCI	AATT	7 cut(s)	98, 240, 323, 372, 532, 590, 991
MlyI	GAGTC	5 cut(s)	97, 138, 377, 704, 879
MmeI	TCCRAC	2 cut(s)	30, 471
MnlI	CCTC	8 cut(s)	71, 226, 328, 461, 671, 677, 859, 949
MroI	TCCGGA	1 cut(s)	674
MseI	TTAA	3 cut(s)	96, 327, 600
MslI	CAYNNNNRTG	1 cut(s)	358
MspI	CCGG	2 cut(s)	549, 675
MunI	CAATTG	1 cut(s)	991
MwoI	GCNNNNNNNGC	2 cut(s)	52, 911
NcoI	CCATGG	1 cut(s)	1019
NdeII	GATC	7 cut(s)	504, 556, 616, 757, 762, 927, 1015
NlaIV	GGNNCC	2 cut(s)	495, 1017
NspI	RCATGY	3 cut(s)	171, 303, 357
PagI	TCATGA	2 cut(s)	147, 501
PciI	ACATGT	2 cut(s)	299, 353
PcsI	WCGNNNNNNNCGW	2 cut(s)	394, 885
PfeI	GAWTC	2 cut(s)	279, 408
PflMI	CCANNNNNTGG	1 cut(s)	462
PkrI	GCNGC	1 cut(s)	26
PleI	GAGTC	5 cut(s)	97, 138, 376, 704, 879
PpsI	GAGTC	5 cut(s)	97, 138, 376, 704, 879
Ppu21I	YACGTR	1 cut(s)	880
PscI	ACATGT	2 cut(s)	299, 353
Psp1406I	AACGTT	1 cut(s)	933
PspN4I	GGNNCC	2 cut(s)	495, 1017
PspPI	GGNCC	2 cut(s)	453, 493
PstNI	CAGNNNCTG	1 cut(s)	462
PsuI	RGATCY	2 cut(s)	757, 1015
RsaI	GTAC	2 cut(s)	878, 940
RsaNI	GTAC	2 cut(s)	877, 939
RseI	CAYNNNNRTG	1 cut(s)	358
SaqAI	TTAA	3 cut(s)	96, 327, 600
SatI	GCNGC	1 cut(s)	25
Sau3AI	GATC	7 cut(s)	504, 556, 616, 757, 762, 927, 1015
Sau96I	GGNCC	2 cut(s)	453, 493
SchI	GAGTC	5 cut(s)	97, 138, 377, 704, 879
SinI	GGWCC	2 cut(s)	453, 493
SmiMI	CAYNNNNRTG	1 cut(s)	358
SnaBI	TACGTA	1 cut(s)	880
Sse9I	AATT	7 cut(s)	98, 240, 323, 372, 532, 590, 991
SsiI	CCGC	3 cut(s)	25, 53, 770
SspI	AATATT	1 cut(s)	789
SspMI	CTAG	4 cut(s)	129, 332, 537, 662
StyI	CCWWGG	1 cut(s)	1019
TaiI	ACGT	2 cut(s)	882, 936
TaqI	TCGA	3 cut(s)	219, 797, 888
TasI	AATT	7 cut(s)	98, 240, 323, 372, 532, 590, 991
TauI	GCSGC	1 cut(s)	27
TfiI	GAWTC	2 cut(s)	279, 408
Tru1I	TTAA	3 cut(s)	96, 327, 600
Tru9I	TTAA	3 cut(s)	96, 327, 600
TscAI	CASTG	1 cut(s)	25
TspDTI	ATGAA	7 cut(s)	26, 99, 263, 490, 574, 588, 651
TspRI	CASTG	1 cut(s)	25
Van91I	CCANNNNNTGG	1 cut(s)	462
VpaK11BI	GGWCC	2 cut(s)	453, 493
XapI	RAATTY	1 cut(s)	323
XceI	RCATGY	3 cut(s)	171, 303, 357
XmiI	GTMKAC	1 cut(s)	339
XspI	CTAG	4 cut(s)	129, 332, 537, 662

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.