RLG00000002701

A Receptor for Ubiquitination Targets

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
OG0006952
Physical Location & Seq
Reverse (-)
38313781 .. 38314884
1104 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000002701

Sequence Viewer

Length: 1104 bp
ATGAGCTTTCACTCTTTGGAAAAAGAGCTGGTAGTCGTAGCTACGTATAAGGACCTAATTTTGTGCTGCGCGACCAAGTATTTTCAACGTGATTACTTCATCTGCAATCCATACACCATGCAGTGGGTTGCTCTTCCTCCTCCTACTCTAGTTCTCCATCACGTACCGGTTGGAATCATCTGCGATGTGCCCTTCTATAATTATGAGAAAGAGAAACACAACAATTACATGCAGCACCTAGTTAATATCTACGATAATTATAGGTGTAAGGTTGTAAGATTTCTTCCTTATGGTGAGACAATACACCAAGCGCACTGGTTTTTGATGGAGAATTCGTTCAAGTTCAAGGTGGAGATCTTTTCTTTTGAAACTGGTGAATGGAGAGTGTCAGTTATATCGTCCCCACGAAAATTCATTTTTGATGAAATCAATTCCGATATTAACTTTGCGTACAATGGAATGCTATATTGGCCGAGTAGGTCAAGTGATGCTAACTTCCTTATTGGGTTGAATCCATTCATGATCAACAACGACACTGATAACAACAAAACTCGTGCTAGTAATTTCGCCGGTGATGGTGATGGTTGCTATAGATGTCGTTTTATTGAACTAGTAGTCCCAATTGACAAAGAAATAACATCTCGTAAGTATCATGTTCAATGTTTAGATGTGCGAGAAGGGTGTCTGCATATGTGCGGCTTTGACTCAGTTGATAAATTTATAATGATTTGGGAGTTGAAAGAAGATGATAATCTGACCCTTGCAGCCGATGGAGTTGAAATTTTGTGTGCGAAGTACTCCGCAGATGATTATTCAATGGAATTTTCGAATTATGTGAACGTAATAGCTATAGAGCCAATTGCTTTTGACCCAAATGAAGAGGATATATTGTACCTAAGACTAAGACACGAGTACCTCAACGATGATGGAGATGGAGAGGGAGTCGAGGATGTTGATATCGATGCCAACCTTAGTACAGGAAACTTGACCTACCACTCGCCGATGATGGCTGAAAAGAGCTTCTACCCACTAACTGTGCCATTGTGGCCGACACCAGTTCCTCGACTACCACACCAAATTGCTGTATCTGCCTTGTCTAAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box

Protein Analysis

368

Amino Acids

42.53

Weight (kDa)

4.89

Isoelectric Point (pI)

35.53

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
b-prop_At3g26010-like PF24750 8 - 302 5.4e-09 F-box protein At3g26010-like, beta-propeller
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 722
AccB7I CCANNNNNTGG 1 cut(s) 123
AccII CGCG 1 cut(s) 71
AciI CCGC 2 cut(s) 696, 801
AcoI YGGCCR 2 cut(s) 470, 1046
AcsI RAATTY 5 cut(s) 331, 410, 716, 780, 821
AfaI GTAC 6 cut(s) 165, 452, 797, 893, 914, 976
AfiI CCNNNNNNNGG 1 cut(s) 123
AgeI ACCGGT 1 cut(s) 166
AhlI ACTAGT 1 cut(s) 610
AjuI GAANNNNNNNTTGG 2 cut(s) 451, 483
AloI GAACNNNNNNTCC 4 cut(s) 320, 352, 600, 632
AluBI AGCT 5 cut(s) 6, 28, 41, 848, 1020
AluI AGCT 5 cut(s) 6, 28, 41, 848, 1020
Alw26I GTCTC 1 cut(s) 290
AoxI GGCC 2 cut(s) 470, 1046
ApeKI GCWGC 3 cut(s) 66, 232, 764
ApoI RAATTY 5 cut(s) 331, 410, 716, 780, 821
AsiGI ACCGGT 1 cut(s) 166
Asp700I GAANNNNTTC 2 cut(s) 335, 515
AspLEI GCGC 2 cut(s) 71, 313
AspS9I GGNCC 1 cut(s) 52
AsuHPI GGTGA 4 cut(s) 305, 386, 584, 590
AsuII TTCGAA 1 cut(s) 827
AvaII GGWCC 1 cut(s) 52
BaeGI GKGCMC 1 cut(s) 192
BaeI ACNNNNGTAYC 2 cut(s) 896, 929
BarI GAAGNNNNNNTAC 2 cut(s) 267, 299
BauI CACGAG 2 cut(s) 552, 908
BbvI GCAGC 3 cut(s) 53, 244, 776
BccI CCATC 8 cut(s) 165, 319, 569, 575, 764, 920, 926, 1000
BclI TGATCA 1 cut(s) 522
BcoDI GTCTC 1 cut(s) 290
BcuI ACTAGT 1 cut(s) 610
BfaI CTAG 4 cut(s) 149, 239, 558, 611
BfmI CTRYAG 2 cut(s) 589, 849
BglI GCCNNNNNGGC 1 cut(s) 1045
BglII AGATCT 1 cut(s) 354
BisI GCNGC 4 cut(s) 67, 233, 697, 765
BlsI GCNGC 4 cut(s) 68, 234, 698, 766
BmcAI AGTACT 1 cut(s) 797
Bme18I GGWCC 1 cut(s) 52
BmgT120I GGNCC 1 cut(s) 52
BmsI GCATC 2 cut(s) 478, 952
Bpu14I TTCGAA 1 cut(s) 827
Bsa29I ATCGAT 1 cut(s) 960
BsaAI YACGTR 2 cut(s) 45, 163
BsaBI GATNNNNATC 1 cut(s) 750
BsaWI WCCGGW 1 cut(s) 166
BsaXI ACNNNNNCTCC 4 cut(s) 320, 350, 927, 957
Bsc4I CCNNNNNNNGG 1 cut(s) 123
Bse118I RCCGGY 2 cut(s) 166, 569
Bse1I ACTGG 3 cut(s) 320, 376, 1055
Bse8I GATNNNNATC 1 cut(s) 750
BseCI ATCGAT 1 cut(s) 960
BseGI GGATG 1 cut(s) 955
BseJI GATNNNNATC 1 cut(s) 750
BseLI CCNNNNNNNGG 1 cut(s) 123
BseMII CTCAG 1 cut(s) 720
BseNI ACTGG 3 cut(s) 320, 376, 1055
BseRI GAGGAG 1 cut(s) 129
BseSI GKGCMC 1 cut(s) 192
BseXI GCAGC 3 cut(s) 53, 244, 776
Bsh1236I CGCG 1 cut(s) 71
BshFI GGCC 2 cut(s) 472, 1048
BshTI ACCGGT 1 cut(s) 166
BshVI ATCGAT 1 cut(s) 960
BsiSI CCGG 2 cut(s) 167, 570
BslFI GGGAC 2 cut(s) 385, 602
BslI CCNNNNNNNGG 1 cut(s) 123
BsmAI GTCTC 1 cut(s) 290
BsmFI GGGAC 2 cut(s) 385, 602
BsmI GAATGC 1 cut(s) 465
BsnI GGCC 2 cut(s) 472, 1048
Bsp119I TTCGAA 1 cut(s) 827
Bsp1286I GDGCHC 1 cut(s) 192
Bsp143I GATC 2 cut(s) 354, 522
BspACI CCGC 2 cut(s) 696, 801
BspANI GGCC 2 cut(s) 472, 1048
BspCNI CTCAG 1 cut(s) 719
BspDI ATCGAT 1 cut(s) 960
BspFNI CGCG 1 cut(s) 71
BspHI TCATGA 1 cut(s) 519
BspQI GCTCTTC 1 cut(s) 138
BspT104I TTCGAA 1 cut(s) 827
BsrFI RCCGGY 2 cut(s) 166, 569
BsrI ACTGG 3 cut(s) 320, 376, 1055
BssAI RCCGGY 2 cut(s) 166, 569
BssMI GATC 2 cut(s) 354, 522
BssSI CACGAG 2 cut(s) 552, 908
Bst2BI CACGAG 2 cut(s) 552, 908
Bst4CI ACNGT 1 cut(s) 1036
Bst6I CTCTTC 2 cut(s) 138, 873
BstBAI YACGTR 2 cut(s) 45, 163
BstBI TTCGAA 1 cut(s) 827
BstDEI CTNAG 5 cut(s) 706, 896, 902, 971, 1098
BstF5I GGATG 1 cut(s) 955
BstFNI CGCG 1 cut(s) 71
BstHHI GCGC 2 cut(s) 71, 313
BstKTI GATC 2 cut(s) 357, 525
BstMAI GTCTC 1 cut(s) 290
BstMBI GATC 2 cut(s) 354, 522
BstMWI GCNNNNNNNGC 3 cut(s) 469, 1045, 1088
BstNSI RCATGY 1 cut(s) 232
BstSFI CTRYAG 2 cut(s) 589, 849
BstSLI GKGCMC 1 cut(s) 192
BstSNI TACGTA 1 cut(s) 45
BstUI CGCG 1 cut(s) 71
BstV1I GCAGC 3 cut(s) 53, 244, 776
BstX2I RGATCY 1 cut(s) 354
BstYI RGATCY 1 cut(s) 354
Bsu15I ATCGAT 1 cut(s) 960
BsuRI GGCC 2 cut(s) 472, 1048
BsuTUI ATCGAT 1 cut(s) 960
BtgZI GCGATG 1 cut(s) 198
BtsCI GGATG 1 cut(s) 955
BtsI GCAGTG 1 cut(s) 128
BtsIMutI CAGTG 3 cut(s) 128, 313, 534
CciI TCATGA 1 cut(s) 519
CfoI GCGC 2 cut(s) 71, 313
Cfr10I RCCGGY 2 cut(s) 166, 569
Cfr13I GGNCC 1 cut(s) 52
ClaI ATCGAT 1 cut(s) 960
Csp6I GTAC 6 cut(s) 164, 451, 796, 892, 913, 975
CspAI ACCGGT 1 cut(s) 166
CviAII CATG 4 cut(s) 118, 229, 520, 653
CviQI GTAC 6 cut(s) 164, 451, 796, 892, 913, 975
DdeI CTNAG 5 cut(s) 706, 896, 902, 971, 1098
DpnI GATC 2 cut(s) 356, 524
DpnII GATC 2 cut(s) 354, 522
EaeI YGGCCR 2 cut(s) 470, 1046
Eam1104I CTCTTC 2 cut(s) 138, 873
EarI CTCTTC 2 cut(s) 138, 873
Eco105I TACGTA 1 cut(s) 45
Eco32I GATATC 1 cut(s) 958
Eco47I GGWCC 1 cut(s) 52
EcoO109I RGGNCCY 1 cut(s) 52
EcoRI GAATTC 1 cut(s) 331
EcoRV GATATC 1 cut(s) 958
FaeI CATG 4 cut(s) 121, 232, 523, 656
FaqI GGGAC 2 cut(s) 385, 602
FatI CATG 4 cut(s) 117, 228, 519, 652
FauNDI CATATG 1 cut(s) 690
FbaI TGATCA 1 cut(s) 522
Fnu4HI GCNGC 4 cut(s) 67, 233, 697, 765
FokI GGATG 1 cut(s) 962
Fsp4HI GCNGC 4 cut(s) 67, 233, 697, 765
FspBI CTAG 4 cut(s) 149, 239, 558, 611
GlaI GCGC 2 cut(s) 70, 312
GluI GCNGC 4 cut(s) 67, 233, 697, 765
HaeIII GGCC 2 cut(s) 472, 1048
HapII CCGG 2 cut(s) 167, 570
HhaI GCGC 2 cut(s) 71, 313
Hin1II CATG 4 cut(s) 121, 232, 523, 656
Hin6I GCGC 2 cut(s) 69, 311
HinP1I GCGC 2 cut(s) 69, 311
HinfI GANTC 4 cut(s) 174, 511, 704, 942
HpaII CCGG 2 cut(s) 167, 570
HphI GGTGA 4 cut(s) 305, 386, 584, 590
Hpy166II GTNNAC 1 cut(s) 838
Hpy188I TCNGA 2 cut(s) 436, 756
Hpy188III TCNNGA 1 cut(s) 520
Hpy8I GTNNAC 1 cut(s) 838
HpyAV CCTTC 2 cut(s) 202, 671
HpyCH4III ACNGT 1 cut(s) 1036
HpyCH4IV ACGT 4 cut(s) 44, 88, 162, 840
HpyCH4V TGCA 5 cut(s) 105, 121, 232, 688, 764
HpyF10VI GCNNNNNNNGC 3 cut(s) 469, 1045, 1088
HpyF3I CTNAG 5 cut(s) 706, 896, 902, 971, 1098
HpySE526I ACGT 4 cut(s) 44, 88, 162, 840
Hsp92II CATG 4 cut(s) 121, 232, 523, 656
HspAI GCGC 2 cut(s) 69, 311
Ksp22I TGATCA 1 cut(s) 522
Kzo9I GATC 2 cut(s) 354, 522
LguI GCTCTTC 1 cut(s) 138
LpnPI CCDG 7 cut(s) 14, 180, 301, 357, 583, 963, 1068
Lsp1109I GCAGC 3 cut(s) 53, 244, 776
LweI GCATC 2 cut(s) 478, 952
MaeI CTAG 4 cut(s) 149, 239, 558, 611
MaeII ACGT 4 cut(s) 44, 88, 162, 840
MalI GATC 2 cut(s) 356, 524
MboI GATC 2 cut(s) 354, 522
MboII GAAGA 4 cut(s) 125, 275, 755, 890
MfeI CAATTG 2 cut(s) 621, 858
MflI RGATCY 1 cut(s) 354
MhlI GDGCHC 1 cut(s) 192
MlyI GAGTC 2 cut(s) 698, 951
MmeI TCCRAC 1 cut(s) 151
MnlI CCTC 7 cut(s) 147, 150, 874, 926, 931, 940, 1071
MroXI GAANNNNTTC 2 cut(s) 335, 515
MseI TTAA 2 cut(s) 243, 441
MspI CCGG 2 cut(s) 167, 570
MunI CAATTG 2 cut(s) 621, 858
Mva1269I GAATGC 1 cut(s) 465
MvnI CGCG 1 cut(s) 71
MwoI GCNNNNNNNGC 3 cut(s) 469, 1045, 1088
NdeI CATATG 1 cut(s) 690
NdeII GATC 2 cut(s) 354, 522
NlaIII CATG 4 cut(s) 121, 232, 523, 656
NmeAIII GCCGAG 1 cut(s) 498
NspI RCATGY 1 cut(s) 232
NspV TTCGAA 1 cut(s) 827
PagI TCATGA 1 cut(s) 519
PciSI GCTCTTC 1 cut(s) 138
PctI GAATGC 1 cut(s) 465
PdmI GAANNNNTTC 2 cut(s) 335, 515
PfeI GAWTC 2 cut(s) 174, 511
PflMI CCANNNNNTGG 1 cut(s) 123
PinAI ACCGGT 1 cut(s) 166
PkrI GCNGC 4 cut(s) 68, 234, 698, 766
PleI GAGTC 2 cut(s) 698, 950
PpsI GAGTC 2 cut(s) 698, 950
Ppu21I YACGTR 2 cut(s) 45, 163
PpuMI RGGWCCY 1 cut(s) 52
PsiI TTATAA 1 cut(s) 722
Psp5II RGGWCCY 1 cut(s) 52
PspPI GGNCC 1 cut(s) 52
PspPPI RGGWCCY 1 cut(s) 52
PsuI RGATCY 1 cut(s) 354
RsaI GTAC 6 cut(s) 165, 452, 797, 893, 914, 976
RsaNI GTAC 6 cut(s) 164, 451, 796, 892, 913, 975
SapI GCTCTTC 1 cut(s) 138
SaqAI TTAA 2 cut(s) 243, 441
SatI GCNGC 4 cut(s) 67, 233, 697, 765
Sau3AI GATC 2 cut(s) 354, 522
Sau96I GGNCC 1 cut(s) 52
ScaI AGTACT 1 cut(s) 797
SchI GAGTC 2 cut(s) 698, 951
SduI GDGCHC 1 cut(s) 192
SfaNI GCATC 2 cut(s) 478, 952
SfcI CTRYAG 2 cut(s) 589, 849
SfuI TTCGAA 1 cut(s) 827
SgrAI CRCCGGYG 1 cut(s) 569
SinI GGWCC 1 cut(s) 52
SnaBI TACGTA 1 cut(s) 45
SpeI ACTAGT 1 cut(s) 610
SsiI CCGC 2 cut(s) 696, 801
SspMI CTAG 4 cut(s) 149, 239, 558, 611
TaaI ACNGT 1 cut(s) 1036
TaiI ACGT 4 cut(s) 47, 91, 165, 843
TaqI TCGA 4 cut(s) 827, 945, 960, 1063
TatI WGTACW 2 cut(s) 795, 974
TauI GCSGC 1 cut(s) 699
TfiI GAWTC 2 cut(s) 174, 511
Tru1I TTAA 2 cut(s) 243, 441
Tru9I TTAA 2 cut(s) 243, 441
TscAI CASTG 3 cut(s) 128, 320, 541
TseI GCWGC 3 cut(s) 66, 232, 764
TspDTI ATGAA 5 cut(s) 88, 403, 438, 508, 891
TspRI CASTG 3 cut(s) 128, 320, 541
Van91I CCANNNNNTGG 1 cut(s) 123
VpaK11BI GGWCC 1 cut(s) 52
XapI RAATTY 5 cut(s) 331, 410, 716, 780, 821
XceI RCATGY 1 cut(s) 232
XmnI GAANNNNTTC 2 cut(s) 335, 515
XspI CTAG 4 cut(s) 149, 239, 558, 611
ZrmI AGTACT 1 cut(s) 797
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.