Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0006952

Physical Location & Seq

Genomic Coordinates Forward (+)

13015561 .. 13016466

Gene Structure 906 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00228570.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 906 bp

ATGGGAGGTGGTGATACAACCAAAAGAAAGGAAAGATCCAGTACAATTTCCCAGTCATTGTCCCTTGAAGCAGTACCACTGGACTCTGTTCATCACTCAAAAAGATCAAAAAGATCATCATCAGCATCAACAACAAGATCAAATTCAAAGTTGATGAATAACACTATTGATGATCTCCCTGATGTTGTATTGCTTGACATTCTCAGTCGACTTCCGTGCTTTGATTTTGTGTTAAAATGCAAGTCTGTGTGCAAACGTTGGAGCATTCTCATGTCGGACCCATACTTCATCGGCCGCTTTCTACATCGACTCCAAAGCCGACATACGCCAATTCCACCACTTACTCTGATCAATCAAAAGGGGGAGAACTTCCCTATGGCATTCAATCCTCTTTCACCGCTGAAGTTTCTAACTAGGATGTTCTTAAGACTCATGAGTTCCCTCTCTTTGAAAAAAGAGCCAGTTGTAGTAGGGGCGTGTAATGACTTAGTTTTGTGTTGCGTAAGTGAGTATTTTCAACGTGATTACTTCATCTGTAATCCATATACCACCCAATGGGTTGCTCTTCCTCCTGTCTCTCGAGTTCTCCGTGACGTACCAGTTGGATTCATATGTGATCCCTACTATAATTATCATAAGAAAGACAGAGATGAAGTGCATCAACCAAAACGTACTATCATACAAGACCAGTTGATTAATATTAACGTGGACTATAGGTGCATGGTAGTGAGAATTCTCCCTTATGATGACACATTTGAAGATGATCTTTCCTACAAATTCAAGGTGGAGATCTTCTCTTTTGAGATTGGTGAATGGAGAGAGTCAATTATCTCGTTCCCACAAAGATTTAAACTTAATGATATCAATTCCGATGTTCACTTTGCTCACAATGAAATGCTGTATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box F-box-like

Protein Analysis

301

Amino Acids

35.01

Weight (kDa)

8.65

Isoelectric Point (pI)

53.66

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
F-box-like	PF12937	56 - 95	1.3e-07	F-box-like
F-box	PF00646	56 - 96	1.4e-07	F-box domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006952)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g31431
rosa_chinensis	RchiOBHm_Chr1g0380481
rosa_laevigata	RLG00000001340 RLG00000002701 RLG00000026293 RLG00000026297
rosa_multiflora	Rmu_sc0000945.1_g000007 Rmu_sc0001733.1_g000007 Rmu_sc0006267.1_g000004
rosa_roxburghii	Rroxscaffold_3G00228330 Rroxscaffold_3G00228570 Rroxscaffold_3G00244720 Rroxscaffold_4G00279310 Rroxscaffold_4G00279330
rosa_rugosa	Rorug07G0270400
rosa_samantha	Rh1CG415600 Rh1DG431400 Rh7AG286300 Rh7AG425300 Rh7AG425800 Rh7DG289700 Rh7DG416900 Rh7DG417100
rosa_wichuraiana	Rw7G035160 Rw7G035250 Rw7G035290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	555
AccI	GTMKAC	1 cut(s)	208
AciI	CCGC	2 cut(s)	295, 398
AclI	AACGTT	1 cut(s)	256
AclWI	GGATC	2 cut(s)	30, 611
AcoI	YGGCCR	1 cut(s)	292
AcsI	RAATTY	3 cut(s)	142, 732, 776
AcuI	CTGAAG	1 cut(s)	422
AfaI	GTAC	4 cut(s)	43, 75, 597, 673
AfiI	CCNNNNNNNGG	1 cut(s)	555
AflII	CTTAAG	1 cut(s)	424
AgsI	TTSAA	7 cut(s)	68, 147, 385, 451, 518, 758, 781
Alw26I	GTCTC	1 cut(s)	580
AlwI	GGATC	2 cut(s)	30, 611
Ama87I	CYCGRG	1 cut(s)	579
AoxI	GGCC	1 cut(s)	292
ApoI	RAATTY	3 cut(s)	142, 732, 776
AseI	ATTAAT	1 cut(s)	696
AspS9I	GGNCC	1 cut(s)	277
AsuHPI	GGTGA	3 cut(s)	23, 387, 821
AvaI	CYCGRG	1 cut(s)	579
AvaII	GGWCC	1 cut(s)	277
BcgI	CGANNNNNNTGC	2 cut(s)	198, 232
BclI	TGATCA	1 cut(s)	348
BcoDI	GTCTC	1 cut(s)	580
BfaI	CTAG	1 cut(s)	414
BfmI	CTRYAG	1 cut(s)	712
BfrI	CTTAAG	1 cut(s)	424
BglII	AGATCT	1 cut(s)	789
BisI	GCNGC	1 cut(s)	295
BlsI	GCNGC	1 cut(s)	296
Bme18I	GGWCC	1 cut(s)	277
BmeT110I	CYCGRG	1 cut(s)	579
BmgT120I	GGNCC	1 cut(s)	277
BmiI	GGNNCC	1 cut(s)	279
BmrI	ACTGGG	1 cut(s)	46
BmsI	GCATC	2 cut(s)	134, 667
BmuI	ACTGGG	1 cut(s)	46
BplI	GAGNNNNNCTC	2 cut(s)	779, 811
BsaBI	GATNNNNATC	1 cut(s)	118
BsaXI	ACNNNNNCTCC	2 cut(s)	294, 324
Bsc4I	CCNNNNNNNGG	1 cut(s)	555
Bse1I	ACTGG	6 cut(s)	39, 52, 84, 461, 599, 688
Bse8I	GATNNNNATC	1 cut(s)	118
BseGI	GGATG	1 cut(s)	423
BseJI	GATNNNNATC	1 cut(s)	118
BseLI	CCNNNNNNNGG	1 cut(s)	555
BseMII	CTCAG	1 cut(s)	217
BseNI	ACTGG	6 cut(s)	39, 52, 84, 461, 599, 688
BseX3I	CGGCCG	1 cut(s)	292
Bsh1285I	CGRYCG	1 cut(s)	295
BshFI	GGCC	1 cut(s)	294
BsiEI	CGRYCG	1 cut(s)	295
BsiHKCI	CYCGRG	1 cut(s)	579
BslFI	GGGAC	1 cut(s)	46
BslI	CCNNNNNNNGG	1 cut(s)	555
BsmAI	GTCTC	1 cut(s)	580
BsmFI	GGGAC	1 cut(s)	46
BsmI	GAATGC	2 cut(s)	264, 380
BsnI	GGCC	1 cut(s)	294
BsoBI	CYCGRG	1 cut(s)	579
Bsp143I	GATC	9 cut(s)	35, 104, 113, 137, 172, 348, 616, 763, 789
BspACI	CCGC	2 cut(s)	295, 398
BspANI	GGCC	1 cut(s)	294
BspCNI	CTCAG	1 cut(s)	216
BspHI	TCATGA	1 cut(s)	432
BspLI	GGNNCC	1 cut(s)	279
BspPI	GGATC	2 cut(s)	30, 611
BspQI	GCTCTTC	1 cut(s)	570
BspTI	CTTAAG	1 cut(s)	424
BsrI	ACTGG	6 cut(s)	39, 52, 84, 461, 599, 688
BssMI	GATC	9 cut(s)	35, 104, 113, 137, 172, 348, 616, 763, 789
Bst6I	CTCTTC	1 cut(s)	570
BstAFI	CTTAAG	1 cut(s)	424
BstDEI	CTNAG	2 cut(s)	203, 487
BstF5I	GGATG	1 cut(s)	423
BstKTI	GATC	9 cut(s)	38, 107, 116, 140, 175, 351, 619, 766, 792
BstMAI	GTCTC	1 cut(s)	580
BstMBI	GATC	9 cut(s)	35, 104, 113, 137, 172, 348, 616, 763, 789
BstMCI	CGRYCG	1 cut(s)	295
BstSFI	CTRYAG	1 cut(s)	712
BstX2I	RGATCY	2 cut(s)	35, 789
BstYI	RGATCY	2 cut(s)	35, 789
BstZI	CGGCCG	1 cut(s)	292
BsuRI	GGCC	1 cut(s)	294
BtsCI	GGATG	1 cut(s)	423
BtsIMutI	CAGTG	1 cut(s)	77
CciI	TCATGA	1 cut(s)	432
Cfr13I	GGNCC	1 cut(s)	277
Csp6I	GTAC	4 cut(s)	42, 74, 596, 672
CviAII	CATG	3 cut(s)	271, 433, 721
CviJI	RGCY	3 cut(s)	294, 318, 460
CviKI_1	RGCY	3 cut(s)	294, 318, 460
CviQI	GTAC	4 cut(s)	42, 74, 596, 672
DdeI	CTNAG	2 cut(s)	203, 487
DpnI	GATC	9 cut(s)	37, 106, 115, 139, 174, 350, 618, 765, 791
DpnII	GATC	9 cut(s)	35, 104, 113, 137, 172, 348, 616, 763, 789
DraI	TTTAAA	1 cut(s)	850
EaeI	YGGCCR	1 cut(s)	292
EagI	CGGCCG	1 cut(s)	292
Eam1104I	CTCTTC	1 cut(s)	570
EarI	CTCTTC	1 cut(s)	570
EclXI	CGGCCG	1 cut(s)	292
Eco32I	GATATC	1 cut(s)	862
Eco47I	GGWCC	1 cut(s)	277
Eco52I	CGGCCG	1 cut(s)	292
Eco57I	CTGAAG	1 cut(s)	422
Eco88I	CYCGRG	1 cut(s)	579
EcoRI	GAATTC	1 cut(s)	732
EcoRV	GATATC	1 cut(s)	862
FaeI	CATG	3 cut(s)	274, 436, 724
FalI	AAGNNNNNCTT	2 cut(s)	750, 782
FaqI	GGGAC	1 cut(s)	46
FatI	CATG	3 cut(s)	270, 432, 720
FauNDI	CATATG	1 cut(s)	611
FbaI	TGATCA	1 cut(s)	348
FblI	GTMKAC	1 cut(s)	208
Fnu4HI	GCNGC	1 cut(s)	295
FokI	GGATG	1 cut(s)	430
Fsp4HI	GCNGC	1 cut(s)	295
FspBI	CTAG	1 cut(s)	414
GluI	GCNGC	1 cut(s)	295
HaeIII	GGCC	1 cut(s)	294
Hin1II	CATG	3 cut(s)	274, 436, 724
HincII	GTYRAC	1 cut(s)	209
HindII	GTYRAC	1 cut(s)	209
HinfI	GANTC	5 cut(s)	83, 309, 429, 606, 821
HphI	GGTGA	3 cut(s)	23, 387, 821
Hpy166II	GTNNAC	3 cut(s)	209, 709, 877
Hpy188I	TCNGA	3 cut(s)	277, 348, 871
Hpy188III	TCNNGA	2 cut(s)	433, 579
Hpy8I	GTNNAC	3 cut(s)	209, 709, 877
HpyCH4IV	ACGT	5 cut(s)	256, 520, 594, 670, 705
HpyCH4V	TGCA	4 cut(s)	240, 252, 658, 720
HpyF3I	CTNAG	2 cut(s)	203, 487
HpySE526I	ACGT	5 cut(s)	256, 520, 594, 670, 705
Hsp92II	CATG	3 cut(s)	274, 436, 724
Ksp22I	TGATCA	1 cut(s)	348
Kzo9I	GATC	9 cut(s)	35, 104, 113, 137, 172, 348, 616, 763, 789
LguI	GCTCTTC	1 cut(s)	570
LmnI	GCTCC	1 cut(s)	261
LpnPI	CCDG	8 cut(s)	52, 65, 65, 192, 474, 585, 612, 701
LweI	GCATC	2 cut(s)	134, 667
MaeI	CTAG	1 cut(s)	414
MaeII	ACGT	5 cut(s)	256, 520, 594, 670, 705
MaeIII	GTNAC	1 cut(s)	590
MalI	GATC	9 cut(s)	37, 106, 115, 139, 174, 350, 618, 765, 791
MboI	GATC	9 cut(s)	35, 104, 113, 137, 172, 348, 616, 763, 789
MboII	GAAGA	3 cut(s)	557, 770, 784
MflI	RGATCY	2 cut(s)	35, 789
MluCI	AATT	8 cut(s)	45, 142, 330, 628, 732, 776, 825, 865
MlyI	GAGTC	4 cut(s)	77, 303, 423, 830
MmeI	TCCRAC	3 cut(s)	239, 255, 583
MnlI	CCTC	3 cut(s)	399, 452, 579
MseI	TTAA	6 cut(s)	233, 425, 696, 702, 849, 855
MslI	CAYNNNNRTG	2 cut(s)	269, 725
MspA1I	CMGCKG	1 cut(s)	400
MspCI	CTTAAG	1 cut(s)	424
Mva1269I	GAATGC	2 cut(s)	264, 380
NdeI	CATATG	1 cut(s)	611
NdeII	GATC	9 cut(s)	35, 104, 113, 137, 172, 348, 616, 763, 789
NlaIII	CATG	3 cut(s)	274, 436, 724
NlaIV	GGNNCC	1 cut(s)	279
NmuCI	GTSAC	1 cut(s)	590
PaeR7I	CTCGAG	1 cut(s)	579
PagI	TCATGA	1 cut(s)	432
PciSI	GCTCTTC	1 cut(s)	570
PcsI	WCGNNNNNNNCGW	1 cut(s)	586
PctI	GAATGC	2 cut(s)	264, 380
PfeI	GAWTC	1 cut(s)	606
PflMI	CCANNNNNTGG	1 cut(s)	555
PkrI	GCNGC	1 cut(s)	296
PleI	GAGTC	4 cut(s)	77, 303, 423, 829
PpsI	GAGTC	4 cut(s)	77, 303, 423, 829
PshBI	ATTAAT	1 cut(s)	696
Psp1406I	AACGTT	1 cut(s)	256
PspN4I	GGNNCC	1 cut(s)	279
PspPI	GGNCC	1 cut(s)	277
PsuI	RGATCY	2 cut(s)	35, 789
RsaI	GTAC	4 cut(s)	43, 75, 597, 673
RsaNI	GTAC	4 cut(s)	42, 74, 596, 672
RseI	CAYNNNNRTG	2 cut(s)	269, 725
SalI	GTCGAC	1 cut(s)	207
SapI	GCTCTTC	1 cut(s)	570
SaqAI	TTAA	6 cut(s)	233, 425, 696, 702, 849, 855
SatI	GCNGC	1 cut(s)	295
Sau3AI	GATC	9 cut(s)	35, 104, 113, 137, 172, 348, 616, 763, 789
Sau96I	GGNCC	1 cut(s)	277
SchI	GAGTC	4 cut(s)	77, 303, 423, 830
SetI	ASST	8 cut(s)	10, 259, 523, 597, 673, 708, 719, 786
SfaNI	GCATC	2 cut(s)	134, 667
SfcI	CTRYAG	1 cut(s)	712
Sfr274I	CTCGAG	1 cut(s)	579
SinI	GGWCC	1 cut(s)	277
SlaI	CTCGAG	1 cut(s)	579
SmiMI	CAYNNNNRTG	2 cut(s)	269, 725
SmlI	CTYRAG	2 cut(s)	424, 579
SmoI	CTYRAG	2 cut(s)	424, 579
Sse9I	AATT	8 cut(s)	45, 142, 330, 628, 732, 776, 825, 865
SsiI	CCGC	2 cut(s)	295, 398
SspI	AATATT	1 cut(s)	700
SspMI	CTAG	1 cut(s)	414
TaiI	ACGT	5 cut(s)	259, 523, 597, 673, 708
TaqI	TCGA	3 cut(s)	208, 307, 580
TasI	AATT	8 cut(s)	45, 142, 330, 628, 732, 776, 825, 865
TatI	WGTACW	1 cut(s)	41
TauI	GCSGC	1 cut(s)	297
TfiI	GAWTC	1 cut(s)	606
Tru1I	TTAA	6 cut(s)	233, 425, 696, 702, 849, 855
Tru9I	TTAA	6 cut(s)	233, 425, 696, 702, 849, 855
TscAI	CASTG	1 cut(s)	84
TseFI	GTSAC	1 cut(s)	590
Tsp45I	GTSAC	1 cut(s)	590
TspDTI	ATGAA	7 cut(s)	80, 170, 277, 520, 598, 666, 906
TspGWI	ACGGA	2 cut(s)	204, 578
TspRI	CASTG	1 cut(s)	84
Van91I	CCANNNNNTGG	1 cut(s)	555
Vha464I	CTTAAG	1 cut(s)	424
VpaK11BI	GGWCC	1 cut(s)	277
VspI	ATTAAT	1 cut(s)	696
XapI	RAATTY	3 cut(s)	142, 732, 776
XhoI	CTCGAG	1 cut(s)	579
XmiI	GTMKAC	1 cut(s)	208
XspI	CTAG	1 cut(s)	414

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.