A Receptor for Ubiquitination Targets
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| Species | Orthologous Gene IDs |
|---|---|
| fragaria_vesca | FvH4_7g31431 |
| rosa_chinensis | RchiOBHm_Chr1g0380481 |
| rosa_laevigata | RLG00000001340 RLG00000002701 RLG00000026293 RLG00000026297 |
| rosa_multiflora | Rmu_sc0000945.1_g000007 Rmu_sc0001733.1_g000007 Rmu_sc0006267.1_g000004 |
| rosa_roxburghii | Rroxscaffold_3G00228330 Rroxscaffold_3G00228570 Rroxscaffold_3G00244720 Rroxscaffold_4G00279310 Rroxscaffold_4G00279330 |
| rosa_rugosa | Rorug07G0270400 |
| rosa_samantha | Rh1CG415600 Rh1DG431400 Rh7AG286300 Rh7AG425300 Rh7AG425800 Rh7DG289700 Rh7DG416900 Rh7DG417100 |
| rosa_wichuraiana | Rw7G035160 Rw7G035250 Rw7G035290 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AciI | CCGC | 1 cut(s) | 503 |
| AcsI | RAATTY | 2 cut(s) | 149, 483 |
| AfaI | GTAC | 3 cut(s) | 51, 192, 540 |
| AflII | CTTAAG | 1 cut(s) | 476 |
| AgsI | TTSAA | 1 cut(s) | 112 |
| AjuI | GAANNNNNNNTTGG | 1 cut(s) | 35 |
| AluBI | AGCT | 3 cut(s) | 64, 329, 337 |
| AluI | AGCT | 3 cut(s) | 64, 329, 337 |
| Alw21I | GWGCWC | 1 cut(s) | 38 |
| Alw26I | GTCTC | 2 cut(s) | 18, 192 |
| ApoI | RAATTY | 2 cut(s) | 149, 483 |
| AspS9I | GGNCC | 1 cut(s) | 490 |
| AsuHPI | GGTGA | 2 cut(s) | 34, 437 |
| AvaII | GGWCC | 1 cut(s) | 490 |
| BauI | CACGAG | 2 cut(s) | 31, 303 |
| BbsI | GAAGAC | 2 cut(s) | 18, 95 |
| Bbv12I | GWGCWC | 1 cut(s) | 38 |
| BccI | CCATC | 1 cut(s) | 541 |
| BciVI | GTATCC | 2 cut(s) | 288, 314 |
| BcoDI | GTCTC | 2 cut(s) | 18, 192 |
| BfaI | CTAG | 2 cut(s) | 398, 546 |
| BfrI | CTTAAG | 1 cut(s) | 476 |
| BfuI | GTATCC | 2 cut(s) | 288, 314 |
| Bme18I | GGWCC | 1 cut(s) | 490 |
| BmgT120I | GGNCC | 1 cut(s) | 490 |
| BpiI | GAAGAC | 2 cut(s) | 18, 95 |
| BpmI | CTGGAG | 1 cut(s) | 315 |
| Bse3DI | GCAATG | 1 cut(s) | 74 |
| BseMI | GCAATG | 1 cut(s) | 74 |
| BseMII | CTCAG | 1 cut(s) | 351 |
| BseYI | CCCAGC | 2 cut(s) | 421, 528 |
| BsgI | GTGCAG | 2 cut(s) | 100, 327 |
| BsiHKAI | GWGCWC | 1 cut(s) | 38 |
| BsmAI | GTCTC | 2 cut(s) | 18, 192 |
| Bsp1286I | GDGCHC | 1 cut(s) | 38 |
| Bsp1407I | TGTACA | 1 cut(s) | 190 |
| Bsp143I | GATC | 1 cut(s) | 565 |
| BspACI | CCGC | 1 cut(s) | 503 |
| BspCNI | CTCAG | 1 cut(s) | 352 |
| BspHI | TCATGA | 1 cut(s) | 169 |
| BspTI | CTTAAG | 1 cut(s) | 476 |
| BsrDI | GCAATG | 1 cut(s) | 74 |
| BsrGI | TGTACA | 1 cut(s) | 190 |
| BssMI | GATC | 1 cut(s) | 565 |
| BssSI | CACGAG | 2 cut(s) | 31, 303 |
| Bst2BI | CACGAG | 2 cut(s) | 31, 303 |
| Bst6I | CTCTTC | 1 cut(s) | 442 |
| BstAFI | CTTAAG | 1 cut(s) | 476 |
| BstAUI | TGTACA | 1 cut(s) | 190 |
| BstC8I | GCNNGC | 3 cut(s) | 310, 339, 393 |
| BstDEI | CTNAG | 3 cut(s) | 84, 267, 360 |
| BstKTI | GATC | 1 cut(s) | 568 |
| BstMAI | GTCTC | 2 cut(s) | 18, 192 |
| BstMBI | GATC | 1 cut(s) | 565 |
| BstV2I | GAAGAC | 2 cut(s) | 18, 95 |
| BsuI | GTATCC | 2 cut(s) | 288, 314 |
| BtsI | GCAGTG | 1 cut(s) | 261 |
| BtsIMutI | CAGTG | 1 cut(s) | 261 |
| Cac8I | GCNNGC | 3 cut(s) | 310, 339, 393 |
| CciI | TCATGA | 1 cut(s) | 169 |
| Cfr13I | GGNCC | 1 cut(s) | 490 |
| Csp6I | GTAC | 3 cut(s) | 50, 191, 539 |
| CviAII | CATG | 2 cut(s) | 98, 170 |
| CviJI | RGCY | 6 cut(s) | 64, 241, 329, 337, 421, 532 |
| CviKI_1 | RGCY | 6 cut(s) | 64, 241, 329, 337, 421, 532 |
| CviQI | GTAC | 3 cut(s) | 50, 191, 539 |
| DdeI | CTNAG | 3 cut(s) | 84, 267, 360 |
| DpnI | GATC | 1 cut(s) | 567 |
| DpnII | GATC | 1 cut(s) | 565 |
| Eam1104I | CTCTTC | 1 cut(s) | 442 |
| EarI | CTCTTC | 1 cut(s) | 442 |
| Eco47I | GGWCC | 1 cut(s) | 490 |
| FaeI | CATG | 2 cut(s) | 101, 173 |
| FatI | CATG | 2 cut(s) | 97, 169 |
| FauNDI | CATATG | 1 cut(s) | 316 |
| FspBI | CTAG | 2 cut(s) | 398, 546 |
| GsaI | CCCAGC | 2 cut(s) | 425, 532 |
| GsuI | CTGGAG | 1 cut(s) | 315 |
| Hin1II | CATG | 2 cut(s) | 101, 173 |
| HinfI | GANTC | 1 cut(s) | 284 |
| HphI | GGTGA | 2 cut(s) | 34, 437 |
| Hpy188I | TCNGA | 2 cut(s) | 124, 253 |
| Hpy188III | TCNNGA | 5 cut(s) | 170, 197, 281, 332, 546 |
| HpyAV | CCTTC | 2 cut(s) | 346, 543 |
| HpyCH4IV | ACGT | 1 cut(s) | 520 |
| HpyCH4V | TGCA | 5 cut(s) | 79, 117, 177, 308, 464 |
| HpyF3I | CTNAG | 3 cut(s) | 84, 267, 360 |
| HpySE526I | ACGT | 1 cut(s) | 520 |
| Hsp92II | CATG | 2 cut(s) | 101, 173 |
| Kzo9I | GATC | 1 cut(s) | 565 |
| LmnI | GCTCC | 1 cut(s) | 334 |
| LpnPI | CCDG | 6 cut(s) | 294, 294, 345, 377, 407, 542 |
| MaeI | CTAG | 2 cut(s) | 398, 546 |
| MaeII | ACGT | 1 cut(s) | 520 |
| MalI | GATC | 1 cut(s) | 567 |
| MboI | GATC | 1 cut(s) | 565 |
| MboII | GAAGA | 3 cut(s) | 23, 100, 429 |
| MfeI | CAATTG | 1 cut(s) | 53 |
| MhlI | GDGCHC | 1 cut(s) | 38 |
| MluCI | AATT | 4 cut(s) | 53, 149, 292, 483 |
| MlyI | GAGTC | 1 cut(s) | 278 |
| MnlI | CCTC | 3 cut(s) | 459, 516, 525 |
| MseI | TTAA | 3 cut(s) | 135, 477, 588 |
| MslI | CAYNNNNRTG | 1 cut(s) | 590 |
| MspCI | CTTAAG | 1 cut(s) | 476 |
| MunI | CAATTG | 1 cut(s) | 53 |
| NdeI | CATATG | 1 cut(s) | 316 |
| NdeII | GATC | 1 cut(s) | 565 |
| NlaIII | CATG | 2 cut(s) | 101, 173 |
| PagI | TCATGA | 1 cut(s) | 169 |
| PleI | GAGTC | 1 cut(s) | 278 |
| PpsI | GAGTC | 1 cut(s) | 278 |
| PspFI | CCCAGC | 2 cut(s) | 421, 528 |
| PspPI | GGNCC | 1 cut(s) | 490 |
| RsaI | GTAC | 3 cut(s) | 51, 192, 540 |
| RsaNI | GTAC | 3 cut(s) | 50, 191, 539 |
| RseI | CAYNNNNRTG | 1 cut(s) | 590 |
| SaqAI | TTAA | 3 cut(s) | 135, 477, 588 |
| Sau3AI | GATC | 1 cut(s) | 565 |
| Sau96I | GGNCC | 1 cut(s) | 490 |
| SchI | GAGTC | 1 cut(s) | 278 |
| SduI | GDGCHC | 1 cut(s) | 38 |
| SetI | ASST | 6 cut(s) | 66, 331, 339, 451, 517, 523 |
| SinI | GGWCC | 1 cut(s) | 490 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 590 |
| SmlI | CTYRAG | 1 cut(s) | 476 |
| SmoI | CTYRAG | 1 cut(s) | 476 |
| Sse9I | AATT | 4 cut(s) | 53, 149, 292, 483 |
| SsiI | CCGC | 1 cut(s) | 503 |
| SspI | AATATT | 2 cut(s) | 19, 217 |
| SspMI | CTAG | 2 cut(s) | 398, 546 |
| TaiI | ACGT | 1 cut(s) | 523 |
| TaqI | TCGA | 2 cut(s) | 196, 225 |
| TasI | AATT | 4 cut(s) | 53, 149, 292, 483 |
| TatI | WGTACW | 3 cut(s) | 49, 190, 538 |
| Tru1I | TTAA | 3 cut(s) | 135, 477, 588 |
| Tru9I | TTAA | 3 cut(s) | 135, 477, 588 |
| TscAI | CASTG | 1 cut(s) | 268 |
| TspDTI | ATGAA | 5 cut(s) | 246, 365, 421, 429, 574 |
| TspRI | CASTG | 1 cut(s) | 268 |
| Vha464I | CTTAAG | 1 cut(s) | 476 |
| VpaK11BI | GGWCC | 1 cut(s) | 490 |
| XapI | RAATTY | 2 cut(s) | 149, 483 |
| XbaI | TCTAGA | 1 cut(s) | 545 |
| XspI | CTAG | 2 cut(s) | 398, 546 |