Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr6

Orthogroup ID

OG0006952

Physical Location & Seq

Genomic Coordinates Reverse (-)

1971816 .. 1972992

Gene Structure 1177 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000026297

Sequence Viewer

CDS Protein Promoter (2k)

Length: 708 bp

ATGCATGTCTACTCTTTTGAGACGTGTGAATGGAGAGAGTCAATTATATCATTCCCACGAAGATTTTGTTTTGATAGAATCAACTCGGATATTCACTTTTCTCACAACGAAATGTTATATTGGTCCAGTATCTGGGGAAGTAGTAACTTTCTGATTGGGTTGGACCCATTCATGATCAACGACAATAACATCAATACCAATAATTCTAGCATTAGCTCCGGTGAAGATCATGCCTATCACTATGAAGGTCGTTTCATTGAATTAGTAGTTAAACACCCTGTTGATGATCCATTAGACAATCCAGATGAACACAACTATCAGATACATGGCCTAGCCGCGCAGTCCGGAGGTGGAGGGTGTCTGCAAATGTGTGTCTTAGACTCTATTGACAACACTATATTGGTTTGGGAGTTGAAAGAAGAAAAAGATCTGATCATTGCGGGCGATGGGGCTGGAATATTGTGTTCGAGAGAAGAAGATATTTGGATGAATATGGCGAAACAAGTGGAGCTGATAGGCTTCAACCCAGCCATTGAGGGTTTCTTGTACGTAAGACTTGACGGAGTTGATGGAGCTTGCTTTTTTGAGATCAACGTTCGTACTAGAGTGGCAAAAGAGGTGGACATGGGTGGAAAGAGTTTGAGGGTTCCTCCAAAGTCCAAACCGAAGAAGTCATTAGGTTCTATGGAAGCTCTGCCCAAAGCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box

Protein Analysis

236

Amino Acids

26.51

Weight (kDa)

4.92

Isoelectric Point (pI)

44.35

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006952)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g31431
rosa_chinensis	RchiOBHm_Chr1g0380481
rosa_laevigata	RLG00000001340 RLG00000002701 RLG00000026293 RLG00000026297
rosa_multiflora	Rmu_sc0000945.1_g000007 Rmu_sc0001733.1_g000007 Rmu_sc0006267.1_g000004
rosa_roxburghii	Rroxscaffold_3G00228330 Rroxscaffold_3G00228570 Rroxscaffold_3G00244720 Rroxscaffold_4G00279310 Rroxscaffold_4G00279330
rosa_rugosa	Rorug07G0270400
rosa_samantha	Rh1CG415600 Rh1DG431400 Rh7AG286300 Rh7AG425300 Rh7AG425800 Rh7DG289700 Rh7DG416900 Rh7DG417100
rosa_wichuraiana	Rw7G035160 Rw7G035250 Rw7G035290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	132
AccI	GTMKAC	1 cut(s)	9
AccII	CGCG	1 cut(s)	338
AccIII	TCCGGA	1 cut(s)	344
AciI	CCGC	2 cut(s)	336, 440
AclI	AACGTT	1 cut(s)	594
AclWI	GGATC	1 cut(s)	281
AfaI	GTAC	2 cut(s)	548, 601
AfiI	CCNNNNNNNGG	1 cut(s)	132
AflIII	ACRYGT	1 cut(s)	23
AgsI	TTSAA	3 cut(s)	260, 415, 523
AjiI	CACGTC	1 cut(s)	24
AluBI	AGCT	4 cut(s)	216, 511, 575, 692
AluI	AGCT	4 cut(s)	216, 511, 575, 692
Alw26I	GTCTC	1 cut(s)	14
AlwI	GGATC	1 cut(s)	281
AlwNI	CAGNNNCTG	1 cut(s)	132
Aor13HI	TCCGGA	1 cut(s)	344
AoxI	GGCC	1 cut(s)	328
AspLEI	GCGC	1 cut(s)	340
AspS9I	GGNCC	2 cut(s)	123, 163
AsuHPI	GGTGA	1 cut(s)	233
AvaII	GGWCC	2 cut(s)	123, 163
BccI	CCATC	2 cut(s)	440, 563
BclI	TGATCA	2 cut(s)	174, 432
BcoDI	GTCTC	1 cut(s)	14
BfaI	CTAG	3 cut(s)	207, 332, 603
BglII	AGATCT	1 cut(s)	427
BisI	GCNGC	1 cut(s)	336
BlsI	GCNGC	1 cut(s)	337
Bme18I	GGWCC	2 cut(s)	123, 163
BmgBI	CACGTC	1 cut(s)	24
BmgT120I	GGNCC	2 cut(s)	123, 163
BmiI	GGNNCC	2 cut(s)	165, 648
BplI	GAGNNNNNCTC	2 cut(s)	634, 666
BsaAI	YACGTR	1 cut(s)	550
BsaWI	WCCGGW	2 cut(s)	218, 344
Bsc4I	CCNNNNNNNGG	1 cut(s)	132
Bse1I	ACTGG	1 cut(s)	126
Bse3DI	GCAATG	1 cut(s)	435
BseAI	TCCGGA	1 cut(s)	344
BseGI	GGATG	1 cut(s)	492
BseLI	CCNNNNNNNGG	1 cut(s)	132
BseMI	GCAATG	1 cut(s)	435
BseNI	ACTGG	1 cut(s)	126
BseYI	CCCAGC	1 cut(s)	526
Bsh1236I	CGCG	1 cut(s)	338
BshFI	GGCC	1 cut(s)	330
BsiSI	CCGG	2 cut(s)	219, 345
BslI	CCNNNNNNNGG	1 cut(s)	132
BsmAI	GTCTC	1 cut(s)	14
BsmBI	CGTCTC	1 cut(s)	14
BsnI	GGCC	1 cut(s)	330
Bsp13I	TCCGGA	1 cut(s)	344
Bsp143I	GATC	6 cut(s)	174, 226, 286, 427, 432, 588
BspACI	CCGC	2 cut(s)	336, 440
BspANI	GGCC	1 cut(s)	330
BspEI	TCCGGA	1 cut(s)	344
BspFNI	CGCG	1 cut(s)	338
BspHI	TCATGA	1 cut(s)	171
BspLI	GGNNCC	2 cut(s)	165, 648
BspPI	GGATC	1 cut(s)	281
BsrDI	GCAATG	1 cut(s)	435
BsrI	ACTGG	1 cut(s)	126
BssMI	GATC	6 cut(s)	174, 226, 286, 427, 432, 588
BstBAI	YACGTR	1 cut(s)	550
BstC8I	GCNNGC	2 cut(s)	442, 577
BstDEI	CTNAG	1 cut(s)	376
BstF5I	GGATG	1 cut(s)	492
BstFNI	CGCG	1 cut(s)	338
BstHHI	GCGC	1 cut(s)	340
BstKTI	GATC	6 cut(s)	177, 229, 289, 430, 435, 591
BstMAI	GTCTC	1 cut(s)	14
BstMBI	GATC	6 cut(s)	174, 226, 286, 427, 432, 588
BstNSI	RCATGY	1 cut(s)	8
BstSNI	TACGTA	1 cut(s)	550
BstUI	CGCG	1 cut(s)	338
BstX2I	RGATCY	1 cut(s)	427
BstYI	RGATCY	1 cut(s)	427
BsuRI	GGCC	1 cut(s)	330
BtgZI	GCGATG	1 cut(s)	459
BtrI	CACGTC	1 cut(s)	24
BtsCI	GGATG	1 cut(s)	492
Cac8I	GCNNGC	2 cut(s)	442, 577
CaiI	CAGNNNCTG	1 cut(s)	132
CciI	TCATGA	1 cut(s)	171
CfoI	GCGC	1 cut(s)	340
Cfr13I	GGNCC	2 cut(s)	123, 163
Csp6I	GTAC	2 cut(s)	547, 600
CspCI	CAANNNNNGTGG	2 cut(s)	600, 635
CviAII	CATG	5 cut(s)	5, 172, 230, 326, 625
CviQI	GTAC	2 cut(s)	547, 600
DdeI	CTNAG	1 cut(s)	376
DpnI	GATC	6 cut(s)	176, 228, 288, 429, 434, 590
DpnII	GATC	6 cut(s)	174, 226, 286, 427, 432, 588
Eco105I	TACGTA	1 cut(s)	550
Eco47I	GGWCC	2 cut(s)	123, 163
EcoT22I	ATGCAT	1 cut(s)	6
Esp3I	CGTCTC	1 cut(s)	14
FaeI	CATG	5 cut(s)	8, 175, 233, 329, 628
FatI	CATG	5 cut(s)	4, 171, 229, 325, 624
FauI	CCCGC	1 cut(s)	433
FbaI	TGATCA	2 cut(s)	174, 432
FblI	GTMKAC	1 cut(s)	9
Fnu4HI	GCNGC	1 cut(s)	336
FokI	GGATG	1 cut(s)	499
Fsp4HI	GCNGC	1 cut(s)	336
FspBI	CTAG	3 cut(s)	207, 332, 603
GlaI	GCGC	1 cut(s)	339
GluI	GCNGC	1 cut(s)	336
GsaI	CCCAGC	1 cut(s)	530
HaeIII	GGCC	1 cut(s)	330
HapII	CCGG	2 cut(s)	219, 345
HhaI	GCGC	1 cut(s)	340
Hin1II	CATG	5 cut(s)	8, 175, 233, 329, 628
Hin6I	GCGC	1 cut(s)	338
HinP1I	GCGC	1 cut(s)	338
HinfI	GANTC	3 cut(s)	38, 78, 380
HpaII	CCGG	2 cut(s)	219, 345
HphI	GGTGA	1 cut(s)	233
Hpy166II	GTNNAC	2 cut(s)	10, 622
Hpy188I	TCNGA	4 cut(s)	88, 153, 321, 432
Hpy188III	TCNNGA	4 cut(s)	172, 302, 345, 468
Hpy8I	GTNNAC	2 cut(s)	10, 622
HpyAV	CCTTC	1 cut(s)	239
HpyCH4IV	ACGT	3 cut(s)	23, 549, 594
HpyCH4V	TGCA	2 cut(s)	4, 364
HpyF3I	CTNAG	1 cut(s)	376
HpySE526I	ACGT	3 cut(s)	23, 549, 594
Hsp92II	CATG	5 cut(s)	8, 175, 233, 329, 628
HspAI	GCGC	1 cut(s)	338
Kpn2I	TCCGGA	1 cut(s)	344
Ksp22I	TGATCA	2 cut(s)	174, 432
Kzo9I	GATC	6 cut(s)	174, 226, 286, 427, 432, 588
LmnI	GCTCC	3 cut(s)	221, 508, 572
LpnPI	CCDG	8 cut(s)	118, 139, 232, 291, 315, 358, 438, 540
MaeI	CTAG	3 cut(s)	207, 332, 603
MaeII	ACGT	3 cut(s)	23, 549, 594
MaeIII	GTNAC	1 cut(s)	143
MalI	GATC	6 cut(s)	176, 228, 288, 429, 434, 590
MboI	GATC	6 cut(s)	174, 226, 286, 427, 432, 588
MboII	GAAGA	6 cut(s)	72, 236, 431, 485, 488, 679
MflI	RGATCY	1 cut(s)	427
MluCI	AATT	3 cut(s)	42, 202, 260
MlyI	GAGTC	2 cut(s)	47, 374
MmeI	TCCRAC	1 cut(s)	141
MnlI	CCTC	6 cut(s)	341, 347, 529, 610, 636, 660
Mph1103I	ATGCAT	1 cut(s)	6
MroI	TCCGGA	1 cut(s)	344
MseI	TTAA	1 cut(s)	270
MspI	CCGG	2 cut(s)	219, 345
MvnI	CGCG	1 cut(s)	338
NdeII	GATC	6 cut(s)	174, 226, 286, 427, 432, 588
NlaIII	CATG	5 cut(s)	8, 175, 233, 329, 628
NlaIV	GGNNCC	2 cut(s)	165, 648
NsiI	ATGCAT	1 cut(s)	6
NspI	RCATGY	1 cut(s)	8
PagI	TCATGA	1 cut(s)	171
PfeI	GAWTC	1 cut(s)	78
PflMI	CCANNNNNTGG	1 cut(s)	132
PkrI	GCNGC	1 cut(s)	337
PleI	GAGTC	2 cut(s)	46, 374
PpsI	GAGTC	2 cut(s)	46, 374
Ppu21I	YACGTR	1 cut(s)	550
Psp1406I	AACGTT	1 cut(s)	594
PspFI	CCCAGC	1 cut(s)	526
PspN4I	GGNNCC	2 cut(s)	165, 648
PspPI	GGNCC	2 cut(s)	123, 163
PstNI	CAGNNNCTG	1 cut(s)	132
PsuI	RGATCY	1 cut(s)	427
RsaI	GTAC	2 cut(s)	548, 601
RsaNI	GTAC	2 cut(s)	547, 600
SaqAI	TTAA	1 cut(s)	270
SatI	GCNGC	1 cut(s)	336
Sau3AI	GATC	6 cut(s)	174, 226, 286, 427, 432, 588
Sau96I	GGNCC	2 cut(s)	123, 163
SchI	GAGTC	2 cut(s)	47, 374
SinI	GGWCC	2 cut(s)	123, 163
SnaBI	TACGTA	1 cut(s)	550
Sse9I	AATT	3 cut(s)	42, 202, 260
SsiI	CCGC	2 cut(s)	336, 440
SspI	AATATT	1 cut(s)	459
SspMI	CTAG	3 cut(s)	207, 332, 603
TaiI	ACGT	3 cut(s)	26, 552, 597
TaqI	TCGA	1 cut(s)	467
TasI	AATT	3 cut(s)	42, 202, 260
TauI	GCSGC	1 cut(s)	338
TfiI	GAWTC	1 cut(s)	78
Tru1I	TTAA	1 cut(s)	270
Tru9I	TTAA	1 cut(s)	270
TspDTI	ATGAA	5 cut(s)	160, 244, 258, 321, 503
TspGWI	ACGGA	1 cut(s)	576
Van91I	CCANNNNNTGG	1 cut(s)	132
VpaK11BI	GGWCC	2 cut(s)	123, 163
XceI	RCATGY	1 cut(s)	8
XmiI	GTMKAC	1 cut(s)	9
XspI	CTAG	3 cut(s)	207, 332, 603
Zsp2I	ATGCAT	1 cut(s)	6

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.