Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr6

Orthogroup ID

OG0006952

Physical Location & Seq

Genomic Coordinates Reverse (-)

1943122 .. 1944627

Gene Structure 1506 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000026293

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1506 bp

ATGGGAGGTGGTGACAGTACTAGTGGTTCGACCAAAAGAAGAAGAAGAAGATACAGTAGAAAATCCCAGTCCTCATCATTGTCACTCGGAGCAGTACCACCGGCCTTTGATCATCCACCAAAAAGATCAAAAAGATCAGCACCACCACCAAAATCAAAGTTTGTCAATACTAATATTGATGATCTCCCTGACAATGTATTGGTCGACATCCTTTCTCGACTTCCAAGCTATGATTACGTTTATGAATACAGGTTTGTGTGCAAGCGTTGGAGGAGTCTCATGTCCGACCTATACTTCAGTGGCCGCTATCTACTGCATCATAAGCAACCACCGCCACTTACTCTGATAAACAAAAGAGGAGAAACCTTCCCTATTAAATTGACTCCTTCATCTCCCAAGTTTCTATCTAGGCTTTTCAAAAGACTCATGAGTGTCATGTCTCTGACATGCGAGCCAGTCGTGGTAGGGGCGTCTAATGACGTGATTTTGTGCTGTGCAACTGAGTATTTTCAACGTGATTACTATATTTGCAATCCATATAGCATACAATGGGTTAATCTTCCTCCCCCCTCTCGAGTCCTCCATCACGTACCAGTTGGATTTATATGTGATCCCTATTATAATTATATTAAGAAAGACAAAGACAATGTGCATCGTCGAAGAGAAAAGAGTATAATCATCGATGATGGCAATGAGGAGCTAATTAGCATGAATAACTGGTATAGGTGCAAGGTTGTGAGAATCCTTCCTTATGACGACACATGTGGAGGCGAACTTTCCTCAAAATTTAAGCTAGATGTTTACTCTTTTGAGACGTGTGAATGGAGAGAGTCAATTATATCATTCCCACGAAGATTTTGTTTTGATAGAATCAACTCGGATATTCACTTTTCTCACAACGAAATGTTATATTGGTCCAGTATCTGGGGAAGTAGTAACTTTCTGATTGGGTTGGACCCATTCATGATCAACGACAATAACATCAATACCAATAATTCTAGCATTAGCTCCGGTGAAGATCATGCCTATCACTATGAAGGTCGTTTCATTGAATTAGTAGTTAAACACCCTGTTGATGATCCATTAGACAATCCAGATGAACACAACTATCAGATACATGGCCTAGCCGCGCAGTCCGGAGGTGGAGGGTGTCTGCAAATGTGTGTCTTAGACTCTATTGACAACACTATATTGGTTTGGGAGTTGAAAGAAGAAAAAGATCTGATCATTGCGGGCGATGGGGCTGGAATATTGTGTTCGAGAGAAGAAGATATTTGGATGAATATGGCGAAACAAGTGGAGCTGATAGGCTTCAACCCAGCCATTGAGGGTTTCTTGTACGTAAGACTTGACGGAGTTGATGGAGTTGATGGAGCTTGCTTTTTTGAGATCAACGTTCGTACTAGAGTGGCAAAAGAGGTGGACATGGGTGGAAAGAGTGTAATGAGTAACTATTGCTTCTTCCCAATAAAAGTGGATCCATGGTGGCCGACACCAGTTCCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box F-box-like

Protein Analysis

502

Amino Acids

57.42

Weight (kDa)

6.37

Isoelectric Point (pI)

58.22

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
F-box	PF00646	59 - 99	1.5e-07	F-box domain
F-box-like	PF12937	59 - 96	2.7e-07	F-box-like

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006952)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g31431
rosa_chinensis	RchiOBHm_Chr1g0380481
rosa_laevigata	RLG00000001340 RLG00000002701 RLG00000026293 RLG00000026297
rosa_multiflora	Rmu_sc0000945.1_g000007 Rmu_sc0001733.1_g000007 Rmu_sc0006267.1_g000004
rosa_roxburghii	Rroxscaffold_3G00228330 Rroxscaffold_3G00228570 Rroxscaffold_3G00244720 Rroxscaffold_4G00279310 Rroxscaffold_4G00279330
rosa_rugosa	Rorug07G0270400
rosa_samantha	Rh1CG415600 Rh1DG431400 Rh7AG286300 Rh7AG425300 Rh7AG425800 Rh7DG289700 Rh7DG416900 Rh7DG417100
rosa_wichuraiana	Rw7G035160 Rw7G035250 Rw7G035290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	621
AccB7I	CCANNNNNTGG	1 cut(s)	924
AccI	GTMKAC	1 cut(s)	204
AccII	CGCG	1 cut(s)	1130
AccIII	TCCGGA	1 cut(s)	1136
AciI	CCGC	4 cut(s)	304, 332, 1128, 1232
AclI	AACGTT	1 cut(s)	1395
AclWI	GGATC	4 cut(s)	605, 1073, 1472, 1485
AcoI	YGGCCR	2 cut(s)	301, 1487
AcsI	RAATTY	1 cut(s)	785
AcuI	CTGAAG	1 cut(s)	280
AcyI	GRCGYC	1 cut(s)	470
AfaI	GTAC	5 cut(s)	19, 96, 591, 1340, 1402
AfiI	CCNNNNNNNGG	1 cut(s)	924
AflIII	ACRYGT	2 cut(s)	761, 815
AgsI	TTSAA	5 cut(s)	418, 512, 1052, 1207, 1315
AhlI	ACTAGT	1 cut(s)	20
AjiI	CACGTC	2 cut(s)	481, 816
AluBI	AGCT	6 cut(s)	228, 700, 793, 1008, 1303, 1376
AluI	AGCT	6 cut(s)	228, 700, 793, 1008, 1303, 1376
Alw26I	GTCTC	3 cut(s)	281, 444, 806
AlwI	GGATC	4 cut(s)	605, 1073, 1472, 1485
AlwNI	CAGNNNCTG	1 cut(s)	924
Ama87I	CYCGRG	1 cut(s)	573
Aor13HI	TCCGGA	1 cut(s)	1136
AoxI	GGCC	4 cut(s)	102, 301, 1120, 1487
ApoI	RAATTY	1 cut(s)	785
AspLEI	GCGC	1 cut(s)	1132
AspS9I	GGNCC	2 cut(s)	915, 955
AsuHPI	GGTGA	2 cut(s)	23, 1025
AvaI	CYCGRG	1 cut(s)	573
AvaII	GGWCC	2 cut(s)	915, 955
BamHI	GGATCC	1 cut(s)	1477
BccI	CCATC	5 cut(s)	591, 680, 1232, 1355, 1364
BclI	TGATCA	3 cut(s)	109, 966, 1224
BcoDI	GTCTC	3 cut(s)	281, 444, 806
BcuI	ACTAGT	1 cut(s)	20
BfaI	CTAG	6 cut(s)	21, 408, 794, 999, 1124, 1404
BglII	AGATCT	1 cut(s)	1219
BisI	GCNGC	2 cut(s)	304, 1128
BlsI	GCNGC	2 cut(s)	305, 1129
BmcAI	AGTACT	1 cut(s)	19
Bme18I	GGWCC	2 cut(s)	915, 955
BmeT110I	CYCGRG	1 cut(s)	573
BmgBI	CACGTC	2 cut(s)	481, 816
BmgT120I	GGNCC	2 cut(s)	915, 955
BmiI	GGNNCC	2 cut(s)	957, 1479
BmrI	ACTGGG	1 cut(s)	61
BmsI	GCATC	2 cut(s)	325, 661
BmuI	ACTGGG	1 cut(s)	61
Bsa29I	ATCGAT	1 cut(s)	681
BsaAI	YACGTR	2 cut(s)	589, 1342
BsaHI	GRCGYC	1 cut(s)	470
BsaJI	CCNNGG	1 cut(s)	1481
BsaWI	WCCGGW	2 cut(s)	1010, 1136
Bsc4I	CCNNNNNNNGG	1 cut(s)	924
Bse118I	RCCGGY	1 cut(s)	100
Bse1I	ACTGG	6 cut(s)	67, 455, 593, 722, 918, 1496
Bse3DI	GCAATG	2 cut(s)	697, 1227
BseAI	TCCGGA	1 cut(s)	1136
BseCI	ATCGAT	1 cut(s)	681
BseDI	CCNNGG	1 cut(s)	1481
BseGI	GGATG	3 cut(s)	112, 207, 1284
BseLI	CCNNNNNNNGG	1 cut(s)	924
BseMI	GCAATG	2 cut(s)	697, 1227
BseMII	CTCAG	1 cut(s)	492
BseNI	ACTGG	6 cut(s)	67, 455, 593, 722, 918, 1496
BseRI	GAGGAG	3 cut(s)	286, 372, 710
BseYI	CCCAGC	1 cut(s)	1318
Bsh1236I	CGCG	1 cut(s)	1130
BshFI	GGCC	4 cut(s)	104, 303, 1122, 1489
BshVI	ATCGAT	1 cut(s)	681
BsiHKCI	CYCGRG	1 cut(s)	573
BsiSI	CCGG	3 cut(s)	101, 1011, 1137
BslI	CCNNNNNNNGG	1 cut(s)	924
BsmAI	GTCTC	3 cut(s)	281, 444, 806
BsmBI	CGTCTC	1 cut(s)	806
BsnI	GGCC	4 cut(s)	104, 303, 1122, 1489
BsoBI	CYCGRG	1 cut(s)	573
Bsp13I	TCCGGA	1 cut(s)	1136
Bsp19I	CCATGG	1 cut(s)	1481
BspACI	CCGC	4 cut(s)	304, 332, 1128, 1232
BspANI	GGCC	4 cut(s)	104, 303, 1122, 1489
BspCNI	CTCAG	1 cut(s)	493
BspDI	ATCGAT	1 cut(s)	681
BspEI	TCCGGA	1 cut(s)	1136
BspFNI	CGCG	1 cut(s)	1130
BspHI	TCATGA	2 cut(s)	426, 963
BspLI	GGNNCC	2 cut(s)	957, 1479
BspPI	GGATC	4 cut(s)	605, 1073, 1472, 1485
BsrDI	GCAATG	2 cut(s)	697, 1227
BsrFI	RCCGGY	1 cut(s)	100
BsrI	ACTGG	6 cut(s)	67, 455, 593, 722, 918, 1496
BssAI	RCCGGY	1 cut(s)	100
BssECI	CCNNGG	1 cut(s)	1481
BssNI	GRCGYC	1 cut(s)	470
BssT1I	CCWWGG	1 cut(s)	1481
Bst4CI	ACNGT	2 cut(s)	17, 56
Bst6I	CTCTTC	1 cut(s)	655
BstACI	GRCGYC	1 cut(s)	470
BstBAI	YACGTR	2 cut(s)	589, 1342
BstC8I	GCNNGC	4 cut(s)	263, 452, 1234, 1378
BstDEI	CTNAG	2 cut(s)	501, 1168
BstDSI	CCRYGG	1 cut(s)	1481
BstF5I	GGATG	3 cut(s)	112, 207, 1284
BstFNI	CGCG	1 cut(s)	1130
BstHHI	GCGC	1 cut(s)	1132
BstMAI	GTCTC	3 cut(s)	281, 444, 806
BstMWI	GCNNNNNNNGC	2 cut(s)	322, 331
BstNSI	RCATGY	2 cut(s)	450, 765
BstSNI	TACGTA	1 cut(s)	1342
BstUI	CGCG	1 cut(s)	1130
BstX2I	RGATCY	2 cut(s)	1219, 1477
BstYI	RGATCY	2 cut(s)	1219, 1477
Bsu15I	ATCGAT	1 cut(s)	681
BsuRI	GGCC	4 cut(s)	104, 303, 1122, 1489
BsuTUI	ATCGAT	1 cut(s)	681
BtgI	CCRYGG	1 cut(s)	1481
BtgZI	GCGATG	1 cut(s)	1251
BtrI	CACGTC	2 cut(s)	481, 816
BtsCI	GGATG	3 cut(s)	112, 207, 1284
BtsIMutI	CAGTG	1 cut(s)	304
Cac8I	GCNNGC	4 cut(s)	263, 452, 1234, 1378
CaiI	CAGNNNCTG	1 cut(s)	924
CciI	TCATGA	2 cut(s)	426, 963
CfoI	GCGC	1 cut(s)	1132
Cfr10I	RCCGGY	1 cut(s)	100
Cfr13I	GGNCC	2 cut(s)	915, 955
ClaI	ATCGAT	1 cut(s)	681
CseI	GACGC	1 cut(s)	459
Csp6I	GTAC	5 cut(s)	18, 95, 590, 1339, 1401
CspCI	CAANNNNNGTGG	4 cut(s)	1401, 1436, 1455, 1490
CviQI	GTAC	5 cut(s)	18, 95, 590, 1339, 1401
DdeI	CTNAG	2 cut(s)	501, 1168
EaeI	YGGCCR	2 cut(s)	301, 1487
Eam1104I	CTCTTC	1 cut(s)	655
EarI	CTCTTC	1 cut(s)	655
Eco105I	TACGTA	1 cut(s)	1342
Eco130I	CCWWGG	1 cut(s)	1481
Eco47I	GGWCC	2 cut(s)	915, 955
Eco57I	CTGAAG	1 cut(s)	280
Eco88I	CYCGRG	1 cut(s)	573
EcoT14I	CCWWGG	1 cut(s)	1481
ErhI	CCWWGG	1 cut(s)	1481
Esp3I	CGTCTC	1 cut(s)	806
FauI	CCCGC	1 cut(s)	1225
FbaI	TGATCA	3 cut(s)	109, 966, 1224
FblI	GTMKAC	1 cut(s)	204
Fnu4HI	GCNGC	2 cut(s)	304, 1128
FokI	GGATG	3 cut(s)	99, 194, 1291
Fsp4HI	GCNGC	2 cut(s)	304, 1128
FspBI	CTAG	6 cut(s)	21, 408, 794, 999, 1124, 1404
GlaI	GCGC	1 cut(s)	1131
GluI	GCNGC	2 cut(s)	304, 1128
GsaI	CCCAGC	1 cut(s)	1322
HaeIII	GGCC	4 cut(s)	104, 303, 1122, 1489
HapII	CCGG	3 cut(s)	101, 1011, 1137
HgaI	GACGC	1 cut(s)	459
HhaI	GCGC	1 cut(s)	1132
Hin1I	GRCGYC	1 cut(s)	470
Hin6I	GCGC	1 cut(s)	1130
HinP1I	GCGC	1 cut(s)	1130
HincII	GTYRAC	1 cut(s)	205
HindII	GTYRAC	1 cut(s)	205
HinfI	GANTC	8 cut(s)	274, 382, 423, 576, 741, 830, 870, 1172
HpaII	CCGG	3 cut(s)	101, 1011, 1137
HphI	GGTGA	2 cut(s)	23, 1025
Hpy166II	GTNNAC	3 cut(s)	205, 802, 1423
Hpy188I	TCNGA	8 cut(s)	89, 286, 345, 444, 880, 945, 1113, 1224
Hpy188III	TCNNGA	7 cut(s)	216, 427, 573, 964, 1094, 1137, 1260
Hpy8I	GTNNAC	3 cut(s)	205, 802, 1423
Hpy99I	CGWCG	1 cut(s)	660
HpyAV	CCTTC	4 cut(s)	376, 396, 755, 1031
HpyCH4III	ACNGT	2 cut(s)	17, 56
HpyCH4IV	ACGT	7 cut(s)	237, 480, 514, 588, 815, 1341, 1395
HpyCH4V	TGCA	7 cut(s)	261, 316, 497, 531, 652, 729, 1156
HpyF10VI	GCNNNNNNNGC	2 cut(s)	322, 331
HpyF3I	CTNAG	2 cut(s)	501, 1168
HpySE526I	ACGT	7 cut(s)	237, 480, 514, 588, 815, 1341, 1395
Hsp92I	GRCGYC	1 cut(s)	470
HspAI	GCGC	1 cut(s)	1130
Kpn2I	TCCGGA	1 cut(s)	1136
Ksp22I	TGATCA	3 cut(s)	109, 966, 1224
LmnI	GCTCC	5 cut(s)	89, 697, 1013, 1300, 1373
LweI	GCATC	2 cut(s)	325, 661
MaeI	CTAG	6 cut(s)	21, 408, 794, 999, 1124, 1404
MaeII	ACGT	7 cut(s)	237, 480, 514, 588, 815, 1341, 1395
MaeIII	GTNAC	4 cut(s)	11, 81, 935, 1448
MflI	RGATCY	2 cut(s)	1219, 1477
MluCI	AATT	7 cut(s)	377, 622, 702, 785, 834, 994, 1052
MlyI	GAGTC	6 cut(s)	283, 376, 417, 585, 839, 1166
MmeI	TCCRAC	4 cut(s)	248, 309, 577, 933
MroI	TCCGGA	1 cut(s)	1136
MseI	TTAA	5 cut(s)	375, 555, 630, 789, 1062
MspI	CCGG	3 cut(s)	101, 1011, 1137
MvnI	CGCG	1 cut(s)	1130
MwoI	GCNNNNNNNGC	2 cut(s)	322, 331
NcoI	CCATGG	1 cut(s)	1481
NlaIV	GGNNCC	2 cut(s)	957, 1479
NmuCI	GTSAC	2 cut(s)	11, 81
NspI	RCATGY	2 cut(s)	450, 765
PaeR7I	CTCGAG	1 cut(s)	573
PagI	TCATGA	2 cut(s)	426, 963
PciI	ACATGT	1 cut(s)	761
PfeI	GAWTC	2 cut(s)	741, 870
PflMI	CCANNNNNTGG	1 cut(s)	924
PkrI	GCNGC	2 cut(s)	305, 1129
PleI	GAGTC	6 cut(s)	282, 376, 417, 584, 838, 1166
PpsI	GAGTC	6 cut(s)	282, 376, 417, 584, 838, 1166
Ppu21I	YACGTR	2 cut(s)	589, 1342
PscI	ACATGT	1 cut(s)	761
PsiI	TTATAA	1 cut(s)	621
Psp1406I	AACGTT	1 cut(s)	1395
PspFI	CCCAGC	1 cut(s)	1318
PspN4I	GGNNCC	2 cut(s)	957, 1479
PspPI	GGNCC	2 cut(s)	915, 955
PsrI	GAACNNNNNNTAC	2 cut(s)	10, 42
PstNI	CAGNNNCTG	1 cut(s)	924
PsuI	RGATCY	2 cut(s)	1219, 1477
RsaI	GTAC	5 cut(s)	19, 96, 591, 1340, 1402
RsaNI	GTAC	5 cut(s)	18, 95, 590, 1339, 1401
SalI	GTCGAC	1 cut(s)	203
SaqAI	TTAA	5 cut(s)	375, 555, 630, 789, 1062
SatI	GCNGC	2 cut(s)	304, 1128
Sau96I	GGNCC	2 cut(s)	915, 955
ScaI	AGTACT	1 cut(s)	19
SchI	GAGTC	6 cut(s)	283, 376, 417, 585, 839, 1166
SfaNI	GCATC	2 cut(s)	325, 661
Sfr274I	CTCGAG	1 cut(s)	573
SinI	GGWCC	2 cut(s)	915, 955
SlaI	CTCGAG	1 cut(s)	573
SmlI	CTYRAG	1 cut(s)	573
SmoI	CTYRAG	1 cut(s)	573
SnaBI	TACGTA	1 cut(s)	1342
SpeI	ACTAGT	1 cut(s)	20
Sse9I	AATT	7 cut(s)	377, 622, 702, 785, 834, 994, 1052
SsiI	CCGC	4 cut(s)	304, 332, 1128, 1232
SspI	AATATT	2 cut(s)	175, 1251
SspMI	CTAG	6 cut(s)	21, 408, 794, 999, 1124, 1404
StyI	CCWWGG	1 cut(s)	1481
TaaI	ACNGT	2 cut(s)	17, 56
TaiI	ACGT	7 cut(s)	240, 483, 517, 591, 818, 1344, 1398
TaqI	TCGA	7 cut(s)	29, 204, 217, 574, 658, 681, 1259
TasI	AATT	7 cut(s)	377, 622, 702, 785, 834, 994, 1052
TatI	WGTACW	1 cut(s)	17
TauI	GCSGC	2 cut(s)	306, 1130
TfiI	GAWTC	2 cut(s)	741, 870
Tru1I	TTAA	5 cut(s)	375, 555, 630, 789, 1062
Tru9I	TTAA	5 cut(s)	375, 555, 630, 789, 1062
TscAI	CASTG	1 cut(s)	304
TseFI	GTSAC	2 cut(s)	11, 81
Tsp45I	GTSAC	2 cut(s)	11, 81
TspDTI	ATGAA	8 cut(s)	258, 378, 725, 952, 1036, 1050, 1113, 1295
TspGWI	ACGGA	1 cut(s)	1368
TspRI	CASTG	1 cut(s)	304
Van91I	CCANNNNNTGG	1 cut(s)	924
VpaK11BI	GGWCC	2 cut(s)	915, 955
XapI	RAATTY	1 cut(s)	785
XceI	RCATGY	2 cut(s)	450, 765
XhoI	CTCGAG	1 cut(s)	573
XmiI	GTMKAC	1 cut(s)	204
XspI	CTAG	6 cut(s)	21, 408, 794, 999, 1124, 1404
ZrmI	AGTACT	1 cut(s)	19

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.