Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0007548

Physical Location & Seq

Genomic Coordinates Reverse (-)

35975063 .. 35977174

Gene Structure 2112 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000002537

Sequence Viewer

CDS Protein Promoter (2k)

Length: 612 bp

ATGGGTATTAGGCTCAAGAGAATGGTGATCTCCGATGAGAGCCTTGAGTTGCTTTCCAGGTATGGCCAAGAAATTATGGCAATGAAGGGGAGGGTCTTGCAAGTTCCACCAGTGTTCAGGCATCGTGTTCTTGAGAAAACTGGAGTTGAGCGACAAGTGGAGAGGATTAGTAAATACGAAAGTGCTGGTGAGCAACTTGAGCTACGACCATGTCTGAAGAAAATTTTGTTGAAATTTGATGTGAAAGTCATCAGGGGAGTGGTTGTTCTTGAAAGTTTTTTTTCCCCTCTTTATGTGATGATATACAGGAAACGTTTAATTGTCAACGTGACTAGTGATTCAAATCTCATTTATAATGCTAGGCCTCATCCAAATGAATGTTCTGGAAGTGATCTTGATGGAGATATTTACTTTGTTTGCTGGGACCCCGAGTTGATTTCTCGCAATCAAATCCAACCTATGGATTATACCCCAGCACCAACTATAAAGATGGATCATGATGTCACAATTGAGTGCCCAATTGACTTCTTTATTAATCGGATGCAATTGCATGCTCTGTTTTCATACTCCAAAGTTGCATCAAAGTACCCTTCAAGGTTTCTCACAAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0006139 GO:0006396 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009605 GO:0009607 GO:0009615 GO:0009719 GO:0009725 GO:0009751 GO:0009892 GO:0009987 GO:0010025 GO:0010033 GO:0010166 GO:0010467 GO:0010468 GO:0010605 GO:0010608 GO:0010629 GO:0014070 GO:0016070 GO:0016246 GO:0016441 GO:0016458 GO:0019222 GO:0030422 GO:0031047 GO:0031050 GO:0034641 GO:0035194 GO:0040029 GO:0042221 GO:0042493 GO:0043170 GO:0043207 GO:0043331 GO:0044237 GO:0044238 GO:0046483 GO:0046677 GO:0048518 GO:0048519 GO:0048522 GO:0050789 GO:0050794 GO:0050896 GO:0051704 GO:0051707 GO:0051716 GO:0060147 GO:0060148 GO:0060255 GO:0060968 GO:0065007 GO:0070887 GO:0070918 GO:0071310 GO:0071359 GO:0071407 GO:0071704 GO:0090304 GO:1901360 GO:1901568 GO:1901570 GO:1901576 GO:1901698 GO:1901699 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RdRP

Protein Analysis

204

Amino Acids

23.61

Weight (kDa)

9.0

Isoelectric Point (pI)

41.68

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RdRP	PF05183	120 - 186	1.9e-18	RNA dependent RNA polymerase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007548)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0152821 RchiOBHm_Chr3g0495421
rosa_laevigata	RLG00000002537 RLG00000013116 RLG00000035479
rosa_multiflora	Rmu_sc0000185.1_g000009 Rmu_sc0000662.1_g000017 Rmu_sc0002244.1_g000021 Rmu_sc0002858.1_g000009 Rmu_sc0006805.1_g000008
rosa_roxburghii	Rroxscaffold_1G00035930 Rroxscaffold_1G00042630 Rroxscaffold_5G00344740
rosa_samantha	Rh2AG316200 Rh2AG528400 Rh2BG485600 Rh2CG229200 Rh2CG512700 Rh2DG403000 Rh2DG494800 Rh3DG247800 Rh4BG207000 Rh5AG221400 Rh5DG249400 Rh6BG071800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	354
AccB7I	CCANNNNNTGG	1 cut(s)	460
AclI	AACGTT	1 cut(s)	313
AclWI	GGATC	1 cut(s)	501
AcoI	YGGCCR	1 cut(s)	64
AcsI	RAATTY	2 cut(s)	222, 233
AcuI	CTGAAG	1 cut(s)	236
AfaI	GTAC	1 cut(s)	587
AfiI	CCNNNNNNNGG	1 cut(s)	460
AgsI	TTSAA	4 cut(s)	232, 272, 342, 594
AhlI	ACTAGT	1 cut(s)	332
AjnI	CCWGG	1 cut(s)	56
AjuI	GAANNNNNNNTTGG	2 cut(s)	364, 396
AloI	GAACNNNNNNTCC	2 cut(s)	249, 281
AluBI	AGCT	1 cut(s)	202
AluI	AGCT	1 cut(s)	202
AlwI	GGATC	1 cut(s)	501
Ama87I	CYCGRG	1 cut(s)	428
AoxI	GGCC	2 cut(s)	64, 362
ApoI	RAATTY	2 cut(s)	222, 233
AseI	ATTAAT	1 cut(s)	534
AspS9I	GGNCC	1 cut(s)	424
AsuHPI	GGTGA	2 cut(s)	37, 200
AvaI	CYCGRG	1 cut(s)	428
AvaII	GGWCC	1 cut(s)	424
BaeGI	GKGCMC	1 cut(s)	518
BalI	TGGCCA	1 cut(s)	66
BccI	CCATC	2 cut(s)	392, 484
BciT130I	CCWGG	1 cut(s)	58
BcuI	ACTAGT	1 cut(s)	332
BfaI	CTAG	2 cut(s)	333, 360
Bme1390I	CCNGG	1 cut(s)	58
Bme18I	GGWCC	1 cut(s)	424
BmeT110I	CYCGRG	1 cut(s)	428
BmgT120I	GGNCC	1 cut(s)	424
BmiI	GGNNCC	2 cut(s)	425, 426
BmrFI	CCNGG	1 cut(s)	58
BmsI	GCATC	3 cut(s)	130, 531, 587
BpmI	CTGGAG	1 cut(s)	162
BpuEI	CTTGAG	3 cut(s)	65, 152, 218
BsaBI	GATNNNNATC	1 cut(s)	342
BsaXI	ACNNNNNCTCC	2 cut(s)	249, 279
Bsc4I	CCNNNNNNNGG	1 cut(s)	460
Bse1I	ACTGG	2 cut(s)	110, 145
Bse3DI	GCAATG	1 cut(s)	87
Bse8I	GATNNNNATC	1 cut(s)	342
BseBI	CCWGG	1 cut(s)	58
BseGI	GGATG	2 cut(s)	367, 546
BseJI	GATNNNNATC	1 cut(s)	342
BseLI	CCNNNNNNNGG	1 cut(s)	460
BseMI	GCAATG	1 cut(s)	87
BseNI	ACTGG	2 cut(s)	110, 145
BseSI	GKGCMC	1 cut(s)	518
BseYI	CCCAGC	2 cut(s)	420, 472
BshFI	GGCC	2 cut(s)	66, 364
BsiHKCI	CYCGRG	1 cut(s)	428
BslFI	GGGAC	1 cut(s)	437
BslI	CCNNNNNNNGG	1 cut(s)	460
BsmFI	GGGAC	1 cut(s)	437
BsnI	GGCC	2 cut(s)	66, 364
BsoBI	CYCGRG	1 cut(s)	428
Bsp1286I	GDGCHC	1 cut(s)	518
Bsp143I	GATC	3 cut(s)	27, 391, 493
BspANI	GGCC	2 cut(s)	66, 364
BspHI	TCATGA	1 cut(s)	496
BspLI	GGNNCC	2 cut(s)	425, 426
BspPI	GGATC	1 cut(s)	501
BsrDI	GCAATG	1 cut(s)	87
BsrI	ACTGG	2 cut(s)	110, 145
BssMI	GATC	3 cut(s)	27, 391, 493
Bst2UI	CCWGG	1 cut(s)	58
BstC8I	GCNNGC	1 cut(s)	552
BstF5I	GGATG	2 cut(s)	367, 546
BstKTI	GATC	3 cut(s)	30, 394, 496
BstMBI	GATC	3 cut(s)	27, 391, 493
BstMWI	GCNNNNNNNGC	1 cut(s)	199
BstNI	CCWGG	1 cut(s)	58
BstNSI	RCATGY	1 cut(s)	554
BstSCI	CCNGG	1 cut(s)	56
BstSLI	GKGCMC	1 cut(s)	518
BsuRI	GGCC	2 cut(s)	66, 364
BtsCI	GGATG	2 cut(s)	367, 546
BtsIMutI	CAGTG	1 cut(s)	117
Cac8I	GCNNGC	1 cut(s)	552
CciI	TCATGA	1 cut(s)	496
Cfr13I	GGNCC	1 cut(s)	424
Csp6I	GTAC	1 cut(s)	586
CviAII	CATG	3 cut(s)	210, 497, 551
CviJI	RGCY	5 cut(s)	13, 42, 66, 202, 364
CviKI_1	RGCY	5 cut(s)	13, 42, 66, 202, 364
CviQI	GTAC	1 cut(s)	586
DpnI	GATC	3 cut(s)	29, 393, 495
DpnII	GATC	3 cut(s)	27, 391, 493
EaeI	YGGCCR	1 cut(s)	64
Eco147I	AGGCCT	1 cut(s)	364
Eco47I	GGWCC	1 cut(s)	424
Eco57I	CTGAAG	1 cut(s)	236
Eco88I	CYCGRG	1 cut(s)	428
EcoO109I	RGGNCCY	1 cut(s)	424
EcoRII	CCWGG	1 cut(s)	56
FaeI	CATG	3 cut(s)	213, 500, 554
FaqI	GGGAC	1 cut(s)	437
FatI	CATG	3 cut(s)	209, 496, 550
FokI	GGATG	2 cut(s)	354, 553
FspBI	CTAG	2 cut(s)	333, 360
GsaI	CCCAGC	2 cut(s)	424, 476
GsuI	CTGGAG	1 cut(s)	162
HaeIII	GGCC	2 cut(s)	66, 364
Hin1II	CATG	3 cut(s)	213, 500, 554
HincII	GTYRAC	1 cut(s)	325
HindII	GTYRAC	1 cut(s)	325
HinfI	GANTC	1 cut(s)	338
HphI	GGTGA	2 cut(s)	37, 200
Hpy166II	GTNNAC	1 cut(s)	325
Hpy188I	TCNGA	3 cut(s)	34, 216, 540
Hpy188III	TCNNGA	6 cut(s)	16, 131, 269, 384, 395, 497
Hpy8I	GTNNAC	1 cut(s)	325
HpyAV	CCTTC	2 cut(s)	79, 600
HpyCH4IV	ACGT	2 cut(s)	313, 327
HpyCH4V	TGCA	4 cut(s)	100, 544, 550, 578
HpyF10VI	GCNNNNNNNGC	1 cut(s)	199
HpySE526I	ACGT	2 cut(s)	313, 327
Hsp92II	CATG	3 cut(s)	213, 500, 554
KflI	GGGWCCC	1 cut(s)	424
Kzo9I	GATC	3 cut(s)	27, 391, 493
LweI	GCATC	3 cut(s)	130, 531, 587
MaeI	CTAG	2 cut(s)	333, 360
MaeII	ACGT	2 cut(s)	313, 327
MaeIII	GTNAC	2 cut(s)	328, 502
MalI	GATC	3 cut(s)	29, 393, 495
MboI	GATC	3 cut(s)	27, 391, 493
MboII	GAAGA	1 cut(s)	229
MfeI	CAATTG	3 cut(s)	507, 519, 545
MhlI	GDGCHC	1 cut(s)	518
MlsI	TGGCCA	1 cut(s)	66
MluCI	AATT	7 cut(s)	72, 222, 233, 318, 507, 519, 545
MluNI	TGGCCA	1 cut(s)	66
MmeI	TCCRAC	1 cut(s)	478
MnlI	CCTC	4 cut(s)	84, 156, 297, 375
Mox20I	TGGCCA	1 cut(s)	66
MscI	TGGCCA	1 cut(s)	66
MseI	TTAA	2 cut(s)	317, 534
MslI	CAYNNNNRTG	1 cut(s)	372
Msp20I	TGGCCA	1 cut(s)	66
MspR9I	CCNGG	1 cut(s)	58
MunI	CAATTG	3 cut(s)	507, 519, 545
MvaI	CCWGG	1 cut(s)	58
MwoI	GCNNNNNNNGC	1 cut(s)	199
NdeII	GATC	3 cut(s)	27, 391, 493
NlaIII	CATG	3 cut(s)	213, 500, 554
NlaIV	GGNNCC	2 cut(s)	425, 426
NmuCI	GTSAC	2 cut(s)	328, 502
NspI	RCATGY	1 cut(s)	554
PaeI	GCATGC	1 cut(s)	554
PagI	TCATGA	1 cut(s)	496
PceI	AGGCCT	1 cut(s)	364
PfeI	GAWTC	1 cut(s)	338
PflFI	GACNNNGTC	1 cut(s)	210
PflMI	CCANNNNNTGG	1 cut(s)	460
PpuMI	RGGWCCY	1 cut(s)	424
PshBI	ATTAAT	1 cut(s)	534
PsiI	TTATAA	1 cut(s)	354
Psp1406I	AACGTT	1 cut(s)	313
Psp5II	RGGWCCY	1 cut(s)	424
Psp6I	CCWGG	1 cut(s)	56
PspFI	CCCAGC	2 cut(s)	420, 472
PspGI	CCWGG	1 cut(s)	56
PspN4I	GGNNCC	2 cut(s)	425, 426
PspPI	GGNCC	1 cut(s)	424
PspPPI	RGGWCCY	1 cut(s)	424
PsyI	GACNNNGTC	1 cut(s)	210
RsaI	GTAC	1 cut(s)	587
RsaNI	GTAC	1 cut(s)	586
RseI	CAYNNNNRTG	1 cut(s)	372
SaqAI	TTAA	2 cut(s)	317, 534
Sau3AI	GATC	3 cut(s)	27, 391, 493
Sau96I	GGNCC	1 cut(s)	424
ScrFI	CCNGG	1 cut(s)	58
SduI	GDGCHC	1 cut(s)	518
SetI	ASST	6 cut(s)	62, 204, 316, 330, 460, 599
SfaNI	GCATC	3 cut(s)	130, 531, 587
SinI	GGWCC	1 cut(s)	424
SmiMI	CAYNNNNRTG	1 cut(s)	372
SmlI	CTYRAG	4 cut(s)	14, 44, 131, 197
SmoI	CTYRAG	4 cut(s)	14, 44, 131, 197
SpeI	ACTAGT	1 cut(s)	332
SphI	GCATGC	1 cut(s)	554
Sse9I	AATT	7 cut(s)	72, 222, 233, 318, 507, 519, 545
SseBI	AGGCCT	1 cut(s)	364
SspMI	CTAG	2 cut(s)	333, 360
StuI	AGGCCT	1 cut(s)	364
StyD4I	CCNGG	1 cut(s)	56
TaiI	ACGT	2 cut(s)	316, 330
TasI	AATT	7 cut(s)	72, 222, 233, 318, 507, 519, 545
TfiI	GAWTC	1 cut(s)	338
Tru1I	TTAA	2 cut(s)	317, 534
Tru9I	TTAA	2 cut(s)	317, 534
TscAI	CASTG	1 cut(s)	117
TseFI	GTSAC	2 cut(s)	328, 502
Tsp45I	GTSAC	2 cut(s)	328, 502
TspDTI	ATGAA	3 cut(s)	98, 390, 552
TspRI	CASTG	1 cut(s)	117
Tth111I	GACNNNGTC	1 cut(s)	210
Van91I	CCANNNNNTGG	1 cut(s)	460
VpaK11BI	GGWCC	1 cut(s)	424
VspI	ATTAAT	1 cut(s)	534
XapI	RAATTY	2 cut(s)	222, 233
XceI	RCATGY	1 cut(s)	554
XspI	CTAG	2 cut(s)	333, 360

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.