Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002858.1

Orthogroup ID

OG0007548

Physical Location & Seq

Genomic Coordinates Forward (+)

32290 .. 34039

Gene Structure 1750 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002858.1_g000009.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 384 bp

atgggtaactgggatttgaattttgtggtatcagtattggattcgaacattggagatgtggatttgggattgaaggaaaaaatgtcaaaattggggctaggaaggctcaagagaatggtggtctccgatgagagccttgagttgctttccaggtatggccaagaaattatggcagtgaaggggagggtcttgcaagttccaccagtgttcaggcatcgtttgcctcatccaaatgaatgttctggaagtgatcttgatggagatatttactttgtttgctgggaccccgagttgatttctcgcaatcaaatccaacctatggattataccccagcaccaactataaagatggatcatgatgtcacaattgaggtattactttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0006139 GO:0006396 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009605 GO:0009607 GO:0009615 GO:0009719 GO:0009725 GO:0009751 GO:0009892 GO:0009987 GO:0010025 GO:0010033 GO:0010166 GO:0010467 GO:0010468 GO:0010605 GO:0010608 GO:0010629 GO:0014070 GO:0016070 GO:0016246 GO:0016441 GO:0016458 GO:0019222 GO:0030422 GO:0031047 GO:0031050 GO:0034641 GO:0035194 GO:0040029 GO:0042221 GO:0042493 GO:0043170 GO:0043207 GO:0043331 GO:0044237 GO:0044238 GO:0046483 GO:0046677 GO:0048518 GO:0048519 GO:0048522 GO:0050789 GO:0050794 GO:0050896 GO:0051704 GO:0051707 GO:0051716 GO:0060147 GO:0060148 GO:0060255 GO:0060968 GO:0065007 GO:0070887 GO:0070918 GO:0071310 GO:0071359 GO:0071407 GO:0071704 GO:0090304 GO:1901360 GO:1901568 GO:1901570 GO:1901576 GO:1901698 GO:1901699 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RdRP

Protein Analysis

127

Amino Acids

14.37

Weight (kDa)

4.92

Isoelectric Point (pI)

48.41

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007548)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0152821 RchiOBHm_Chr3g0495421
rosa_laevigata	RLG00000002537 RLG00000013116 RLG00000035479
rosa_multiflora	Rmu_sc0000185.1_g000009 Rmu_sc0000662.1_g000017 Rmu_sc0002244.1_g000021 Rmu_sc0002858.1_g000009 Rmu_sc0006805.1_g000008
rosa_roxburghii	Rroxscaffold_1G00035930 Rroxscaffold_1G00042630 Rroxscaffold_5G00344740
rosa_samantha	Rh2AG316200 Rh2AG528400 Rh2BG485600 Rh2CG229200 Rh2CG512700 Rh2DG403000 Rh2DG494800 Rh3DG247800 Rh4BG207000 Rh5AG221400 Rh5DG249400 Rh6BG071800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	319
AclWI	GGATC	1 cut(s)	360
AcoI	YGGCCR	1 cut(s)	157
AcsI	RAATTY	1 cut(s)	19
AfiI	CCNNNNNNNGG	1 cut(s)	319
AgsI	TTSAA	2 cut(s)	19, 73
AjnI	CCWGG	1 cut(s)	149
AjuI	GAANNNNNNNTTGG	2 cut(s)	223, 255
Alw26I	GTCTC	1 cut(s)	127
AlwI	GGATC	1 cut(s)	360
Ama87I	CYCGRG	1 cut(s)	287
AoxI	GGCC	1 cut(s)	157
ApoI	RAATTY	1 cut(s)	19
AspS9I	GGNCC	1 cut(s)	283
AsuII	TTCGAA	1 cut(s)	44
AvaI	CYCGRG	1 cut(s)	287
AvaII	GGWCC	1 cut(s)	283
BalI	TGGCCA	1 cut(s)	159
BccI	CCATC	2 cut(s)	251, 343
BciT130I	CCWGG	1 cut(s)	151
BcoDI	GTCTC	1 cut(s)	127
BfaI	CTAG	1 cut(s)	98
Bme1390I	CCNGG	1 cut(s)	151
Bme18I	GGWCC	1 cut(s)	283
BmeT110I	CYCGRG	1 cut(s)	287
BmgT120I	GGNCC	1 cut(s)	283
BmiI	GGNNCC	2 cut(s)	284, 285
BmrFI	CCNGG	1 cut(s)	151
BmrI	ACTGGG	1 cut(s)	19
BmsI	GCATC	1 cut(s)	223
BmuI	ACTGGG	1 cut(s)	19
Bpu14I	TTCGAA	1 cut(s)	44
BpuEI	CTTGAG	2 cut(s)	92, 158
BsaI	GGTCTC	1 cut(s)	127
Bsc4I	CCNNNNNNNGG	1 cut(s)	319
Bse1I	ACTGG	2 cut(s)	14, 203
BseBI	CCWGG	1 cut(s)	151
BseGI	GGATG	1 cut(s)	226
BseLI	CCNNNNNNNGG	1 cut(s)	319
BseNI	ACTGG	2 cut(s)	14, 203
BseYI	CCCAGC	2 cut(s)	279, 331
BshFI	GGCC	1 cut(s)	159
BsiHKCI	CYCGRG	1 cut(s)	287
BslFI	GGGAC	1 cut(s)	296
BslI	CCNNNNNNNGG	1 cut(s)	319
BsmAI	GTCTC	1 cut(s)	127
BsmFI	GGGAC	1 cut(s)	296
BsnI	GGCC	1 cut(s)	159
Bso31I	GGTCTC	1 cut(s)	127
BsoBI	CYCGRG	1 cut(s)	287
Bsp119I	TTCGAA	1 cut(s)	44
Bsp143I	GATC	2 cut(s)	250, 352
BspANI	GGCC	1 cut(s)	159
BspHI	TCATGA	1 cut(s)	355
BspLI	GGNNCC	2 cut(s)	284, 285
BspPI	GGATC	1 cut(s)	360
BspT104I	TTCGAA	1 cut(s)	44
BspTNI	GGTCTC	1 cut(s)	127
BsrI	ACTGG	2 cut(s)	14, 203
BssMI	GATC	2 cut(s)	250, 352
Bst2UI	CCWGG	1 cut(s)	151
BstAPI	GCANNNNNTGC	1 cut(s)	220
BstBI	TTCGAA	1 cut(s)	44
BstF5I	GGATG	1 cut(s)	226
BstKTI	GATC	2 cut(s)	253, 355
BstMAI	GTCTC	1 cut(s)	127
BstMBI	GATC	2 cut(s)	250, 352
BstMWI	GCNNNNNNNGC	2 cut(s)	103, 220
BstNI	CCWGG	1 cut(s)	151
BstSCI	CCNGG	1 cut(s)	149
BsuRI	GGCC	1 cut(s)	159
BtsCI	GGATG	1 cut(s)	226
BtsI	GCAGTG	1 cut(s)	180
BtsIMutI	CAGTG	2 cut(s)	180, 210
CciI	TCATGA	1 cut(s)	355
Cfr13I	GGNCC	1 cut(s)	283
CviAII	CATG	1 cut(s)	356
CviJI	RGCY	4 cut(s)	97, 106, 135, 159
CviKI_1	RGCY	4 cut(s)	97, 106, 135, 159
DpnI	GATC	2 cut(s)	252, 354
DpnII	GATC	2 cut(s)	250, 352
EaeI	YGGCCR	1 cut(s)	157
Eco31I	GGTCTC	1 cut(s)	127
Eco47I	GGWCC	1 cut(s)	283
Eco88I	CYCGRG	1 cut(s)	287
EcoO109I	RGGNCCY	1 cut(s)	283
EcoRII	CCWGG	1 cut(s)	149
FaeI	CATG	1 cut(s)	359
FaiI	YATR	6 cut(s)	156, 170, 320, 327, 344, 357
FaqI	GGGAC	1 cut(s)	296
FatI	CATG	1 cut(s)	355
FokI	GGATG	1 cut(s)	213
FspBI	CTAG	1 cut(s)	98
GsaI	CCCAGC	2 cut(s)	283, 335
HaeIII	GGCC	1 cut(s)	159
Hin1II	CATG	1 cut(s)	359
HinfI	GANTC	1 cut(s)	41
Hpy188I	TCNGA	1 cut(s)	127
Hpy188III	TCNNGA	4 cut(s)	109, 243, 254, 356
HpyAV	CCTTC	3 cut(s)	67, 96, 172
HpyCH4V	TGCA	1 cut(s)	193
HpyF10VI	GCNNNNNNNGC	2 cut(s)	103, 220
Hsp92II	CATG	1 cut(s)	359
KflI	GGGWCCC	1 cut(s)	283
Kzo9I	GATC	2 cut(s)	250, 352
LpnPI	CCDG	7 cut(s)	136, 163, 196, 216, 228, 265, 345
LweI	GCATC	1 cut(s)	223
MaeI	CTAG	1 cut(s)	98
MaeIII	GTNAC	2 cut(s)	5, 361
MalI	GATC	2 cut(s)	252, 354
MboI	GATC	2 cut(s)	250, 352
MfeI	CAATTG	1 cut(s)	366
MlsI	TGGCCA	1 cut(s)	159
MluCI	AATT	4 cut(s)	19, 89, 165, 366
MluNI	TGGCCA	1 cut(s)	159
MmeI	TCCRAC	1 cut(s)	337
MnlI	CCTC	3 cut(s)	177, 234, 364
Mox20I	TGGCCA	1 cut(s)	159
MscI	TGGCCA	1 cut(s)	159
MslI	CAYNNNNRTG	1 cut(s)	231
Msp20I	TGGCCA	1 cut(s)	159
MspR9I	CCNGG	1 cut(s)	151
MunI	CAATTG	1 cut(s)	366
MvaI	CCWGG	1 cut(s)	151
MwoI	GCNNNNNNNGC	2 cut(s)	103, 220
NdeII	GATC	2 cut(s)	250, 352
NlaIII	CATG	1 cut(s)	359
NlaIV	GGNNCC	2 cut(s)	284, 285
NmuCI	GTSAC	1 cut(s)	361
NspV	TTCGAA	1 cut(s)	44
PagI	TCATGA	1 cut(s)	355
PfeI	GAWTC	1 cut(s)	41
PflMI	CCANNNNNTGG	1 cut(s)	319
PpuMI	RGGWCCY	1 cut(s)	283
Psp5II	RGGWCCY	1 cut(s)	283
Psp6I	CCWGG	1 cut(s)	149
PspFI	CCCAGC	2 cut(s)	279, 331
PspGI	CCWGG	1 cut(s)	149
PspN4I	GGNNCC	2 cut(s)	284, 285
PspPI	GGNCC	1 cut(s)	283
PspPPI	RGGWCCY	1 cut(s)	283
RseI	CAYNNNNRTG	1 cut(s)	231
Sau3AI	GATC	2 cut(s)	250, 352
Sau96I	GGNCC	1 cut(s)	283
ScrFI	CCNGG	1 cut(s)	151
SetI	ASST	3 cut(s)	155, 319, 375
SfaNI	GCATC	1 cut(s)	223
SfuI	TTCGAA	1 cut(s)	44
SinI	GGWCC	1 cut(s)	283
SmiMI	CAYNNNNRTG	1 cut(s)	231
SmlI	CTYRAG	2 cut(s)	107, 137
SmoI	CTYRAG	2 cut(s)	107, 137
Sse9I	AATT	4 cut(s)	19, 89, 165, 366
SspMI	CTAG	1 cut(s)	98
StyD4I	CCNGG	1 cut(s)	149
TaqI	TCGA	1 cut(s)	44
TasI	AATT	4 cut(s)	19, 89, 165, 366
TfiI	GAWTC	1 cut(s)	41
TscAI	CASTG	2 cut(s)	180, 210
TseFI	GTSAC	1 cut(s)	361
Tsp45I	GTSAC	1 cut(s)	361
TspDTI	ATGAA	1 cut(s)	249
TspRI	CASTG	2 cut(s)	180, 210
Van91I	CCANNNNNTGG	1 cut(s)	319
VpaK11BI	GGWCC	1 cut(s)	283
XapI	RAATTY	1 cut(s)	19
XspI	CTAG	1 cut(s)	98

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.