Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000662.1

Orthogroup ID

OG0007548

Physical Location & Seq

Genomic Coordinates Reverse (-)

72961 .. 75286

Gene Structure 2326 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000662.1_g000017.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 516 bp

atgggtattaggctcaagagaatggtggtctccgatgagagccttgagttgctttccaggtatggccaagaaattatggcagtgaaggggagggtcttgcaatatccaccagtgttcaggcatcgtttgatgtggagggaaatcaaacttttggcagcatcaaaactggacatcacatcaatgtctgacgtggcagcaagtggaggatactatatggcaatggcagcagatgccattgttgcagaaaatttaaccttaactggttccattggagttgtcacaggttacactagtggaacttgcaagaccatccccttcactgccaaaacttttaagtggtgtagggagtactctggagggagttgctttctaggtcggagaaatattaatagtctgaaagcaagcaagcaagatatatttaatagtctgaaagcaatgctgatgttccgagaaaagcttcctgcattcaatgtgaagtctgagttcctgagagctgtttctgaaaatcaggtgtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Peptidase_S49

Protein Analysis

171

Amino Acids

19.1

Weight (kDa)

9.74

Isoelectric Point (pI)

38.91

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007548)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0152821 RchiOBHm_Chr3g0495421
rosa_laevigata	RLG00000002537 RLG00000013116 RLG00000035479
rosa_multiflora	Rmu_sc0000185.1_g000009 Rmu_sc0000662.1_g000017 Rmu_sc0002244.1_g000021 Rmu_sc0002858.1_g000009 Rmu_sc0006805.1_g000008
rosa_roxburghii	Rroxscaffold_1G00035930 Rroxscaffold_1G00042630 Rroxscaffold_5G00344740
rosa_samantha	Rh2AG316200 Rh2AG528400 Rh2BG485600 Rh2CG229200 Rh2CG512700 Rh2DG403000 Rh2DG494800 Rh3DG247800 Rh4BG207000 Rh5AG221400 Rh5DG249400 Rh6BG071800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcoI	YGGCCR	1 cut(s)	64
AcsI	RAATTY	1 cut(s)	247
AfaI	GTAC	1 cut(s)	350
AgsI	TTSAA	1 cut(s)	469
AhlI	ACTAGT	1 cut(s)	290
AjiI	CACGTC	1 cut(s)	190
AjnI	CCWGG	1 cut(s)	56
AluBI	AGCT	2 cut(s)	457, 494
AluI	AGCT	2 cut(s)	457, 494
Alw26I	GTCTC	1 cut(s)	34
AoxI	GGCC	1 cut(s)	64
ApeKI	GCWGC	3 cut(s)	155, 194, 224
ApoI	RAATTY	1 cut(s)	247
AseI	ATTAAT	1 cut(s)	387
Asp700I	GAANNNNTTC	1 cut(s)	456
BalI	TGGCCA	1 cut(s)	66
BbvI	GCAGC	3 cut(s)	167, 206, 236
BccI	CCATC	1 cut(s)	317
BciT130I	CCWGG	1 cut(s)	58
BciVI	GTATCC	1 cut(s)	200
BcoDI	GTCTC	1 cut(s)	34
BcuI	ACTAGT	1 cut(s)	290
BfaI	CTAG	2 cut(s)	291, 371
BfuI	GTATCC	1 cut(s)	200
BisI	GCNGC	3 cut(s)	156, 195, 225
BlsI	GCNGC	3 cut(s)	157, 196, 226
BmcAI	AGTACT	1 cut(s)	350
Bme1390I	CCNGG	1 cut(s)	58
BmgBI	CACGTC	1 cut(s)	190
BmiI	GGNNCC	1 cut(s)	265
BmrFI	CCNGG	1 cut(s)	58
BmsI	GCATC	3 cut(s)	130, 167, 220
BpmI	CTGGAG	1 cut(s)	375
BpuEI	CTTGAG	1 cut(s)	65
BsaI	GGTCTC	1 cut(s)	34
Bse1I	ACTGG	3 cut(s)	110, 171, 265
Bse3DI	GCAATG	2 cut(s)	225, 441
BseBI	CCWGG	1 cut(s)	58
BseGI	GGATG	1 cut(s)	309
BseMI	GCAATG	2 cut(s)	225, 441
BseMII	CTCAG	2 cut(s)	471, 479
BseNI	ACTGG	3 cut(s)	110, 171, 265
BseXI	GCAGC	3 cut(s)	167, 206, 236
BshFI	GGCC	1 cut(s)	66
BsmAI	GTCTC	1 cut(s)	34
BsmI	GAATGC	1 cut(s)	464
BsnI	GGCC	1 cut(s)	66
Bso31I	GGTCTC	1 cut(s)	34
BspANI	GGCC	1 cut(s)	66
BspCNI	CTCAG	2 cut(s)	472, 480
BspLI	GGNNCC	1 cut(s)	265
BspTNI	GGTCTC	1 cut(s)	34
BsrDI	GCAATG	2 cut(s)	225, 441
BsrI	ACTGG	3 cut(s)	110, 171, 265
Bst2UI	CCWGG	1 cut(s)	58
BstAPI	GCANNNNNTGC	1 cut(s)	230
BstC8I	GCNNGC	2 cut(s)	403, 407
BstDEI	CTNAG	2 cut(s)	480, 488
BstF5I	GGATG	1 cut(s)	309
BstMAI	GTCTC	1 cut(s)	34
BstMWI	GCNNNNNNNGC	3 cut(s)	224, 230, 239
BstNI	CCWGG	1 cut(s)	58
BstSCI	CCNGG	1 cut(s)	56
BstV1I	GCAGC	3 cut(s)	167, 206, 236
BsuI	GTATCC	1 cut(s)	200
BsuRI	GGCC	1 cut(s)	66
BtrI	CACGTC	1 cut(s)	190
BtsCI	GGATG	1 cut(s)	309
BtsI	GCAGTG	2 cut(s)	87, 318
BtsIMutI	CAGTG	3 cut(s)	87, 117, 318
Cac8I	GCNNGC	2 cut(s)	403, 407
Csp6I	GTAC	1 cut(s)	349
CviJI	RGCY	5 cut(s)	13, 42, 66, 457, 494
CviKI_1	RGCY	5 cut(s)	13, 42, 66, 457, 494
CviQI	GTAC	1 cut(s)	349
DdeI	CTNAG	2 cut(s)	480, 488
EaeI	YGGCCR	1 cut(s)	64
Eco31I	GGTCTC	1 cut(s)	34
EcoRII	CCWGG	1 cut(s)	56
FaiI	YATR	5 cut(s)	63, 77, 213, 215, 416
Fnu4HI	GCNGC	3 cut(s)	156, 195, 225
FokI	GGATG	1 cut(s)	296
Fsp4HI	GCNGC	3 cut(s)	156, 195, 225
FspBI	CTAG	2 cut(s)	291, 371
GluI	GCNGC	3 cut(s)	156, 195, 225
GsuI	CTGGAG	1 cut(s)	375
HaeIII	GGCC	1 cut(s)	66
HindIII	AAGCTT	1 cut(s)	455
Hpy188I	TCNGA	8 cut(s)	34, 187, 378, 396, 429, 449, 481, 502
Hpy188III	TCNNGA	3 cut(s)	16, 354, 487
HpyAV	CCTTC	2 cut(s)	79, 325
HpyCH4IV	ACGT	1 cut(s)	189
HpyCH4V	TGCA	4 cut(s)	100, 242, 303, 464
HpyF10VI	GCNNNNNNNGC	3 cut(s)	224, 230, 239
HpyF3I	CTNAG	2 cut(s)	480, 488
HpySE526I	ACGT	1 cut(s)	189
Lsp1109I	GCAGC	3 cut(s)	167, 206, 236
LweI	GCATC	3 cut(s)	130, 167, 220
MaeI	CTAG	2 cut(s)	291, 371
MaeII	ACGT	1 cut(s)	189
MaeIII	GTNAC	2 cut(s)	277, 284
MlsI	TGGCCA	1 cut(s)	66
MluCI	AATT	2 cut(s)	72, 247
MluNI	TGGCCA	1 cut(s)	66
MmeI	TCCRAC	1 cut(s)	356
MnlI	CCTC	4 cut(s)	84, 129, 197, 350
Mox20I	TGGCCA	1 cut(s)	66
MroXI	GAANNNNTTC	1 cut(s)	456
MscI	TGGCCA	1 cut(s)	66
MseI	TTAA	5 cut(s)	251, 257, 333, 387, 420
MslI	CAYNNNNRTG	1 cut(s)	179
Msp20I	TGGCCA	1 cut(s)	66
MspR9I	CCNGG	1 cut(s)	58
Mva1269I	GAATGC	1 cut(s)	464
MvaI	CCWGG	1 cut(s)	58
MwoI	GCNNNNNNNGC	3 cut(s)	224, 230, 239
NlaIV	GGNNCC	1 cut(s)	265
NmuCI	GTSAC	1 cut(s)	277
PctI	GAATGC	1 cut(s)	464
PdmI	GAANNNNTTC	1 cut(s)	456
PkrI	GCNGC	3 cut(s)	157, 196, 226
PshBI	ATTAAT	1 cut(s)	387
Psp6I	CCWGG	1 cut(s)	56
PspGI	CCWGG	1 cut(s)	56
PspN4I	GGNNCC	1 cut(s)	265
RsaI	GTAC	1 cut(s)	350
RsaNI	GTAC	1 cut(s)	349
RseI	CAYNNNNRTG	1 cut(s)	179
SaqAI	TTAA	5 cut(s)	251, 257, 333, 387, 420
SatI	GCNGC	3 cut(s)	156, 195, 225
ScaI	AGTACT	1 cut(s)	350
ScrFI	CCNGG	1 cut(s)	58
SetI	ASST	8 cut(s)	62, 192, 257, 286, 376, 459, 496, 513
SfaNI	GCATC	3 cut(s)	130, 167, 220
SmiMI	CAYNNNNRTG	1 cut(s)	179
SmlI	CTYRAG	2 cut(s)	14, 44
SmoI	CTYRAG	2 cut(s)	14, 44
SpeI	ACTAGT	1 cut(s)	290
Sse9I	AATT	2 cut(s)	72, 247
SspI	AATATT	1 cut(s)	385
SspMI	CTAG	2 cut(s)	291, 371
StyD4I	CCNGG	1 cut(s)	56
TaiI	ACGT	1 cut(s)	192
TasI	AATT	2 cut(s)	72, 247
TatI	WGTACW	1 cut(s)	348
Tru1I	TTAA	5 cut(s)	251, 257, 333, 387, 420
Tru9I	TTAA	5 cut(s)	251, 257, 333, 387, 420
TscAI	CASTG	3 cut(s)	87, 117, 325
TseFI	GTSAC	1 cut(s)	277
TseI	GCWGC	3 cut(s)	155, 194, 224
Tsp45I	GTSAC	1 cut(s)	277
TspRI	CASTG	3 cut(s)	87, 117, 325
VspI	ATTAAT	1 cut(s)	387
XapI	RAATTY	1 cut(s)	247
XmnI	GAANNNNTTC	1 cut(s)	456
XspI	CTAG	2 cut(s)	291, 371
ZrmI	AGTACT	1 cut(s)	350

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.