Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2C

Orthogroup ID

OG0007548

Physical Location & Seq

Genomic Coordinates Forward (+)

23237522 .. 23239309

Gene Structure 1788 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2CG229200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 285 bp

ATGGGTATTAGGCTCAAGAGAATGGTGGTCTCTGATGAGAGCCTTGAGTTGCTTTCCAGGTATGGCCAAGAAATTATGGCAGTGAAGGGGAGGGTCTTGCAAGTTCCACCAGTGTTCAGGCATCGTTTGCCTCATTCAAATGAATGTTCTGGAAGTGATCTTGATGGAGATATTTACTTTGTTTGCTGGGACCCCGAGTTGATTTCTCGCAATCAAATCCAACCTATGGATTATACCCCAGCACCAACTATAAAGATGGATCATGATGTCACAATTGAGAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0006139 GO:0006396 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009605 GO:0009607 GO:0009615 GO:0009719 GO:0009725 GO:0009751 GO:0009892 GO:0009987 GO:0010025 GO:0010033 GO:0010166 GO:0010467 GO:0010468 GO:0010605 GO:0010608 GO:0010629 GO:0014070 GO:0016070 GO:0016246 GO:0016441 GO:0016458 GO:0019222 GO:0030422 GO:0031047 GO:0031050 GO:0034641 GO:0035194 GO:0040029 GO:0042221 GO:0042493 GO:0043170 GO:0043207 GO:0043331 GO:0044237 GO:0044238 GO:0046483 GO:0046677 GO:0048518 GO:0048519 GO:0048522 GO:0050789 GO:0050794 GO:0050896 GO:0051704 GO:0051707 GO:0051716 GO:0060147 GO:0060148 GO:0060255 GO:0060968 GO:0065007 GO:0070887 GO:0070918 GO:0071310 GO:0071359 GO:0071407 GO:0071704 GO:0090304 GO:1901360 GO:1901568 GO:1901570 GO:1901576 GO:1901698 GO:1901699 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RdRP

Protein Analysis

94

Amino Acids

10.8

Weight (kDa)

5.2

Isoelectric Point (pI)

53.44

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RdRP	PF05183	43 - 93	5.4e-15	RNA dependent RNA polymerase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0007548)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0152821 RchiOBHm_Chr3g0495421
rosa_laevigata	RLG00000002537 RLG00000013116 RLG00000035479
rosa_multiflora	Rmu_sc0000185.1_g000009 Rmu_sc0000662.1_g000017 Rmu_sc0002244.1_g000021 Rmu_sc0002858.1_g000009 Rmu_sc0006805.1_g000008
rosa_roxburghii	Rroxscaffold_1G00035930 Rroxscaffold_1G00042630 Rroxscaffold_5G00344740
rosa_samantha	Rh2AG316200 Rh2AG528400 Rh2BG485600 Rh2CG229200 Rh2CG512700 Rh2DG403000 Rh2DG494800 Rh3DG247800 Rh4BG207000 Rh5AG221400 Rh5DG249400 Rh6BG071800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	226
AclWI	GGATC	1 cut(s)	267
AcoI	YGGCCR	1 cut(s)	64
AfiI	CCNNNNNNNGG	1 cut(s)	226
AgsI	TTSAA	1 cut(s)	138
AjnI	CCWGG	1 cut(s)	56
Alw26I	GTCTC	1 cut(s)	34
AlwI	GGATC	1 cut(s)	267
Ama87I	CYCGRG	1 cut(s)	194
AoxI	GGCC	1 cut(s)	64
AspS9I	GGNCC	1 cut(s)	190
AvaI	CYCGRG	1 cut(s)	194
AvaII	GGWCC	1 cut(s)	190
BalI	TGGCCA	1 cut(s)	66
BccI	CCATC	2 cut(s)	158, 250
BciT130I	CCWGG	1 cut(s)	58
BcoDI	GTCTC	1 cut(s)	34
Bme1390I	CCNGG	1 cut(s)	58
Bme18I	GGWCC	1 cut(s)	190
BmeT110I	CYCGRG	1 cut(s)	194
BmgT120I	GGNCC	1 cut(s)	190
BmiI	GGNNCC	2 cut(s)	191, 192
BmrFI	CCNGG	1 cut(s)	58
BmsI	GCATC	1 cut(s)	130
BpuEI	CTTGAG	1 cut(s)	65
BsaI	GGTCTC	1 cut(s)	34
Bsc4I	CCNNNNNNNGG	1 cut(s)	226
Bse1I	ACTGG	1 cut(s)	110
BseBI	CCWGG	1 cut(s)	58
BseLI	CCNNNNNNNGG	1 cut(s)	226
BseNI	ACTGG	1 cut(s)	110
BseYI	CCCAGC	2 cut(s)	186, 238
BshFI	GGCC	1 cut(s)	66
BsiHKCI	CYCGRG	1 cut(s)	194
BslFI	GGGAC	1 cut(s)	203
BslI	CCNNNNNNNGG	1 cut(s)	226
BsmAI	GTCTC	1 cut(s)	34
BsmFI	GGGAC	1 cut(s)	203
BsnI	GGCC	1 cut(s)	66
Bso31I	GGTCTC	1 cut(s)	34
BsoBI	CYCGRG	1 cut(s)	194
Bsp143I	GATC	2 cut(s)	157, 259
BspANI	GGCC	1 cut(s)	66
BspHI	TCATGA	1 cut(s)	262
BspLI	GGNNCC	2 cut(s)	191, 192
BspPI	GGATC	1 cut(s)	267
BspTNI	GGTCTC	1 cut(s)	34
BsrI	ACTGG	1 cut(s)	110
BssMI	GATC	2 cut(s)	157, 259
Bst2UI	CCWGG	1 cut(s)	58
BstAPI	GCANNNNNTGC	1 cut(s)	127
BstKTI	GATC	2 cut(s)	160, 262
BstMAI	GTCTC	1 cut(s)	34
BstMBI	GATC	2 cut(s)	157, 259
BstMWI	GCNNNNNNNGC	1 cut(s)	127
BstNI	CCWGG	1 cut(s)	58
BstSCI	CCNGG	1 cut(s)	56
BsuRI	GGCC	1 cut(s)	66
BtsI	GCAGTG	1 cut(s)	87
BtsIMutI	CAGTG	2 cut(s)	87, 117
CciI	TCATGA	1 cut(s)	262
Cfr13I	GGNCC	1 cut(s)	190
CviAII	CATG	1 cut(s)	263
CviJI	RGCY	3 cut(s)	13, 42, 66
CviKI_1	RGCY	3 cut(s)	13, 42, 66
DpnI	GATC	2 cut(s)	159, 261
DpnII	GATC	2 cut(s)	157, 259
EaeI	YGGCCR	1 cut(s)	64
Eco31I	GGTCTC	1 cut(s)	34
Eco47I	GGWCC	1 cut(s)	190
Eco88I	CYCGRG	1 cut(s)	194
EcoO109I	RGGNCCY	1 cut(s)	190
EcoRII	CCWGG	1 cut(s)	56
FaeI	CATG	1 cut(s)	266
FaiI	YATR	6 cut(s)	63, 77, 227, 234, 251, 264
FaqI	GGGAC	1 cut(s)	203
FatI	CATG	1 cut(s)	262
GsaI	CCCAGC	2 cut(s)	190, 242
HaeIII	GGCC	1 cut(s)	66
Hin1II	CATG	1 cut(s)	266
Hpy188I	TCNGA	1 cut(s)	34
Hpy188III	TCNNGA	4 cut(s)	16, 150, 161, 263
HpyAV	CCTTC	1 cut(s)	79
HpyCH4V	TGCA	1 cut(s)	100
HpyF10VI	GCNNNNNNNGC	1 cut(s)	127
Hsp92II	CATG	1 cut(s)	266
KflI	GGGWCCC	1 cut(s)	190
Kzo9I	GATC	2 cut(s)	157, 259
LpnPI	CCDG	7 cut(s)	43, 70, 103, 123, 135, 172, 252
LweI	GCATC	1 cut(s)	130
MaeIII	GTNAC	1 cut(s)	268
MalI	GATC	2 cut(s)	159, 261
MboI	GATC	2 cut(s)	157, 259
MfeI	CAATTG	1 cut(s)	273
MlsI	TGGCCA	1 cut(s)	66
MluCI	AATT	3 cut(s)	72, 273, 280
MluNI	TGGCCA	1 cut(s)	66
MmeI	TCCRAC	1 cut(s)	244
MnlI	CCTC	2 cut(s)	84, 141
Mox20I	TGGCCA	1 cut(s)	66
MscI	TGGCCA	1 cut(s)	66
MslI	CAYNNNNRTG	1 cut(s)	138
Msp20I	TGGCCA	1 cut(s)	66
MspR9I	CCNGG	1 cut(s)	58
MunI	CAATTG	1 cut(s)	273
MvaI	CCWGG	1 cut(s)	58
MwoI	GCNNNNNNNGC	1 cut(s)	127
NdeII	GATC	2 cut(s)	157, 259
NlaIII	CATG	1 cut(s)	266
NlaIV	GGNNCC	2 cut(s)	191, 192
NmuCI	GTSAC	1 cut(s)	268
PagI	TCATGA	1 cut(s)	262
PflMI	CCANNNNNTGG	1 cut(s)	226
PpuMI	RGGWCCY	1 cut(s)	190
Psp5II	RGGWCCY	1 cut(s)	190
Psp6I	CCWGG	1 cut(s)	56
PspFI	CCCAGC	2 cut(s)	186, 238
PspGI	CCWGG	1 cut(s)	56
PspN4I	GGNNCC	2 cut(s)	191, 192
PspPI	GGNCC	1 cut(s)	190
PspPPI	RGGWCCY	1 cut(s)	190
RseI	CAYNNNNRTG	1 cut(s)	138
Sau3AI	GATC	2 cut(s)	157, 259
Sau96I	GGNCC	1 cut(s)	190
ScrFI	CCNGG	1 cut(s)	58
SetI	ASST	2 cut(s)	62, 226
SfaNI	GCATC	1 cut(s)	130
SinI	GGWCC	1 cut(s)	190
SmiMI	CAYNNNNRTG	1 cut(s)	138
SmlI	CTYRAG	2 cut(s)	14, 44
SmoI	CTYRAG	2 cut(s)	14, 44
Sse9I	AATT	3 cut(s)	72, 273, 280
StyD4I	CCNGG	1 cut(s)	56
TasI	AATT	3 cut(s)	72, 273, 280
TscAI	CASTG	2 cut(s)	87, 117
TseFI	GTSAC	1 cut(s)	268
Tsp45I	GTSAC	1 cut(s)	268
TspDTI	ATGAA	1 cut(s)	156
TspRI	CASTG	2 cut(s)	87, 117
Van91I	CCANNNNNTGG	1 cut(s)	226
VpaK11BI	GGWCC	1 cut(s)	190

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.