Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5A

Orthogroup ID

OG0007548

Physical Location & Seq

Genomic Coordinates Reverse (-)

26176222 .. 26204018

Gene Structure 27797 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5AG221400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 564 bp

ATGAGCCAACTTTCATTTCTTAGTTTCCGGCCTTATTATGGCTTTCTCAGTTTCTCAGTTAATCGAACTCCCTCTTTTTGTCCCTTCAACCTCCCCTTTCGATGCCCCACTACTAGTGGATTGCGAGGCAACTCTTTGACTAGAGCACCGTCCCCTGATATGTGTCAATTAACTGGTCTGTGGTACTTTGATGTTAGAGGCAATAACCTGACTGGCCCTGCGTCTCGTATCAGATTACCAAAATCAATCTTTACAAGGATTGTAGGCATGGAAAGGCTTGGGGAGTCATTCATAAGGAAGAGAGACTATGCAGCTCAGCTAGTGCCATATGTTTCATCAAGAGACCAACTATGCAAGTTAAGCCAAGTTTCTCGTCAATCTGTTTCCGCAGTTCAGTATCTTTTGAAGGCTTCTTGCCAGATCTTGGACTCTATATGTTCATCATGTACCTGCAAGCAACTCCTTAAAGATTTTATCTTGTCTGTGACATTCTCTATGTTTCCTAATGCGAGTGAAGAAAATCACTTGAGCAAACTATCTTTCATTCTTTCTGATTCTCCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

187

Amino Acids

21.04

Weight (kDa)

9.47

Isoelectric Point (pI)

54.53

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0007548)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0152821 RchiOBHm_Chr3g0495421
rosa_laevigata	RLG00000002537 RLG00000013116 RLG00000035479
rosa_multiflora	Rmu_sc0000185.1_g000009 Rmu_sc0000662.1_g000017 Rmu_sc0002244.1_g000021 Rmu_sc0002858.1_g000009 Rmu_sc0006805.1_g000008
rosa_roxburghii	Rroxscaffold_1G00035930 Rroxscaffold_1G00042630 Rroxscaffold_5G00344740
rosa_samantha	Rh2AG316200 Rh2AG528400 Rh2BG485600 Rh2CG229200 Rh2CG512700 Rh2DG403000 Rh2DG494800 Rh3DG247800 Rh4BG207000 Rh5AG221400 Rh5DG249400 Rh6BG071800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	458
AccB7I	CCANNNNNTGG	1 cut(s)	424
AciI	CCGC	1 cut(s)	387
AfaI	GTAC	2 cut(s)	185, 448
AfiI	CCNNNNNNNGG	2 cut(s)	38, 424
AgsI	TTSAA	2 cut(s)	88, 406
AhlI	ACTAGT	1 cut(s)	113
AjuI	GAANNNNNNNTTGG	1 cut(s)	32
AluBI	AGCT	2 cut(s)	314, 319
AluI	AGCT	2 cut(s)	314, 319
Alw21I	GWGCWC	1 cut(s)	148
Alw26I	GTCTC	3 cut(s)	228, 297, 336
AoxI	GGCC	2 cut(s)	29, 214
ApeKI	GCWGC	1 cut(s)	311
AspS9I	GGNCC	1 cut(s)	215
Bbv12I	GWGCWC	1 cut(s)	148
BbvI	GCAGC	1 cut(s)	323
BcoDI	GTCTC	3 cut(s)	228, 297, 336
BcuI	ACTAGT	1 cut(s)	113
BfaI	CTAG	3 cut(s)	114, 141, 320
BfuAI	ACCTGC	1 cut(s)	458
BglII	AGATCT	1 cut(s)	420
BisI	GCNGC	1 cut(s)	312
BlpI	GCTNAGC	1 cut(s)	315
BlsI	GCNGC	1 cut(s)	313
BmgT120I	GGNCC	1 cut(s)	215
BmsI	GCATC	1 cut(s)	92
Bpu1102I	GCTNAGC	1 cut(s)	315
BpuEI	CTTGAG	1 cut(s)	547
BsaI	GGTCTC	1 cut(s)	336
Bsc4I	CCNNNNNNNGG	2 cut(s)	38, 424
Bse1I	ACTGG	2 cut(s)	178, 217
BseLI	CCNNNNNNNGG	2 cut(s)	38, 424
BseMII	CTCAG	3 cut(s)	61, 69, 329
BseNI	ACTGG	2 cut(s)	178, 217
BseXI	GCAGC	1 cut(s)	323
BshFI	GGCC	2 cut(s)	31, 216
BsiHKAI	GWGCWC	1 cut(s)	148
BsiSI	CCGG	1 cut(s)	28
BslFI	GGGAC	2 cut(s)	66, 136
BslI	CCNNNNNNNGG	2 cut(s)	38, 424
BsmAI	GTCTC	3 cut(s)	228, 297, 336
BsmBI	CGTCTC	1 cut(s)	228
BsmFI	GGGAC	2 cut(s)	66, 136
BsnI	GGCC	2 cut(s)	31, 216
Bso31I	GGTCTC	1 cut(s)	336
Bsp1286I	GDGCHC	1 cut(s)	148
Bsp143I	GATC	1 cut(s)	420
Bsp1720I	GCTNAGC	1 cut(s)	315
BspACI	CCGC	1 cut(s)	387
BspANI	GGCC	2 cut(s)	31, 216
BspCNI	CTCAG	3 cut(s)	60, 68, 328
BspMI	ACCTGC	1 cut(s)	458
BspTNI	GGTCTC	1 cut(s)	336
BsrI	ACTGG	2 cut(s)	178, 217
BssMI	GATC	1 cut(s)	420
Bst4CI	ACNGT	1 cut(s)	150
Bst6I	CTCTTC	1 cut(s)	293
BstC8I	GCNNGC	1 cut(s)	455
BstDEI	CTNAG	4 cut(s)	20, 47, 55, 315
BstKTI	GATC	1 cut(s)	423
BstMAI	GTCTC	3 cut(s)	228, 297, 336
BstMBI	GATC	1 cut(s)	420
BstMWI	GCNNNNNNNGC	1 cut(s)	360
BstV1I	GCAGC	1 cut(s)	323
BstX2I	RGATCY	1 cut(s)	420
BstYI	RGATCY	1 cut(s)	420
BsuRI	GGCC	2 cut(s)	31, 216
BveI	ACCTGC	1 cut(s)	458
Cac8I	GCNNGC	1 cut(s)	455
Cfr13I	GGNCC	1 cut(s)	215
CseI	GACGC	1 cut(s)	210
Csp6I	GTAC	2 cut(s)	184, 447
CviAII	CATG	2 cut(s)	268, 444
CviJI	RGCY	9 cut(s)	6, 31, 42, 216, 277, 314, 319, 363, 410
CviKI_1	RGCY	9 cut(s)	6, 31, 42, 216, 277, 314, 319, 363, 410
CviQI	GTAC	2 cut(s)	184, 447
DdeI	CTNAG	4 cut(s)	20, 47, 55, 315
DpnI	GATC	1 cut(s)	422
DpnII	GATC	1 cut(s)	420
Eam1104I	CTCTTC	1 cut(s)	293
EarI	CTCTTC	1 cut(s)	293
Eco31I	GGTCTC	1 cut(s)	336
Esp3I	CGTCTC	1 cut(s)	228
FaeI	CATG	2 cut(s)	271, 447
FaqI	GGGAC	2 cut(s)	66, 136
FatI	CATG	2 cut(s)	267, 443
FauNDI	CATATG	1 cut(s)	328
Fnu4HI	GCNGC	1 cut(s)	312
Fsp4HI	GCNGC	1 cut(s)	312
FspBI	CTAG	3 cut(s)	114, 141, 320
GluI	GCNGC	1 cut(s)	312
HaeIII	GGCC	2 cut(s)	31, 216
HapII	CCGG	1 cut(s)	28
HgaI	GACGC	1 cut(s)	210
Hin1II	CATG	2 cut(s)	271, 447
HinfI	GANTC	3 cut(s)	284, 428, 554
HpaII	CCGG	1 cut(s)	28
Hpy188I	TCNGA	2 cut(s)	233, 553
Hpy188III	TCNNGA	1 cut(s)	339
HpyAV	CCTTC	2 cut(s)	94, 400
HpyCH4III	ACNGT	1 cut(s)	150
HpyCH4V	TGCA	3 cut(s)	311, 354, 453
HpyF10VI	GCNNNNNNNGC	1 cut(s)	360
HpyF3I	CTNAG	4 cut(s)	20, 47, 55, 315
Hsp92II	CATG	2 cut(s)	271, 447
Kzo9I	GATC	1 cut(s)	420
LpnPI	CCDG	8 cut(s)	41, 159, 168, 198, 221, 231, 431, 463
Lsp1109I	GCAGC	1 cut(s)	323
LweI	GCATC	1 cut(s)	92
MaeI	CTAG	3 cut(s)	114, 141, 320
MaeIII	GTNAC	1 cut(s)	484
MalI	GATC	1 cut(s)	422
MboI	GATC	1 cut(s)	420
MboII	GAAGA	2 cut(s)	310, 527
MflI	RGATCY	1 cut(s)	420
MhlI	GDGCHC	1 cut(s)	148
MluCI	AATT	1 cut(s)	167
MlyI	GAGTC	2 cut(s)	293, 422
MnlI	CCTC	4 cut(s)	82, 101, 119, 191
MseI	TTAA	4 cut(s)	60, 170, 359, 465
MspI	CCGG	1 cut(s)	28
MwoI	GCNNNNNNNGC	1 cut(s)	360
NdeI	CATATG	1 cut(s)	328
NdeII	GATC	1 cut(s)	420
NlaIII	CATG	2 cut(s)	271, 447
NmuCI	GTSAC	1 cut(s)	484
PfeI	GAWTC	1 cut(s)	554
PflMI	CCANNNNNTGG	1 cut(s)	424
PkrI	GCNGC	1 cut(s)	313
PleI	GAGTC	2 cut(s)	292, 422
PpsI	GAGTC	2 cut(s)	292, 422
PspPI	GGNCC	1 cut(s)	215
PsuI	RGATCY	1 cut(s)	420
RsaI	GTAC	2 cut(s)	185, 448
RsaNI	GTAC	2 cut(s)	184, 447
SaqAI	TTAA	4 cut(s)	60, 170, 359, 465
SatI	GCNGC	1 cut(s)	312
Sau3AI	GATC	1 cut(s)	420
Sau96I	GGNCC	1 cut(s)	215
SchI	GAGTC	2 cut(s)	293, 422
SduI	GDGCHC	1 cut(s)	148
SetI	ASST	5 cut(s)	93, 210, 316, 321, 452
SfaNI	GCATC	1 cut(s)	92
SmlI	CTYRAG	1 cut(s)	526
SmoI	CTYRAG	1 cut(s)	526
SpeI	ACTAGT	1 cut(s)	113
Sse9I	AATT	1 cut(s)	167
SsiI	CCGC	1 cut(s)	387
SspMI	CTAG	3 cut(s)	114, 141, 320
TaaI	ACNGT	1 cut(s)	150
TaqI	TCGA	2 cut(s)	64, 100
TasI	AATT	1 cut(s)	167
TfiI	GAWTC	1 cut(s)	554
Tru1I	TTAA	4 cut(s)	60, 170, 359, 465
Tru9I	TTAA	4 cut(s)	60, 170, 359, 465
TseFI	GTSAC	1 cut(s)	484
TseI	GCWGC	1 cut(s)	311
Tsp45I	GTSAC	1 cut(s)	484
TspDTI	ATGAA	4 cut(s)	280, 324, 429, 532
Van91I	CCANNNNNTGG	1 cut(s)	424
XspI	CTAG	3 cut(s)	114, 141, 320

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.